Array 1 206927-207865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQC010000004.1 Listeria seeligeri strain FSL L7-1636 NODE_4_length_298186_cov_42.195781, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 206927 29 100.0 35 ............................. ACTGTTAAAAGTAGTTGCTGTTGCAATTCAATTTT 206991 29 100.0 35 ............................. TGGGAAGTTATTTTTTTTAATTCAGTGTGATGTTT 207055 29 100.0 35 ............................. ACTGACTCCACCCCGCTGAGGTATACTCTTGATTT 207119 29 100.0 38 ............................. ATTGGTACAGAAAATGTTCAAGGTGTGTCGATATATTT 207186 29 100.0 37 ............................. ACAAGAAGCGATTAAATTATGAGCTATTGAGGCGGAG 207252 29 100.0 35 ............................. TAGATATATCCATATCTATACTGAGCTATAGGGAC 207316 29 100.0 37 ............................. ACAAATGCCGTTTTTGCTAAAAATCAAATTGATAATC 207382 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 207447 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 207512 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 207576 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 207641 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 207706 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 207771 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 207837 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 214094-215291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQC010000004.1 Listeria seeligeri strain FSL L7-1636 NODE_4_length_298186_cov_42.195781, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 214094 29 100.0 36 ............................. ATATTAATTTGAGCGATGGTACATGTTTGGATCTGA 214159 29 100.0 37 ............................. TCGTAACTCGAGCTGAATCAACCAAAATGACTGATAC 214225 29 100.0 36 ............................. AAAGGATACACTGGTCAATTTAAACAAGAAGGTATT 214290 29 100.0 35 ............................. ATAGTTCTTCTTCTTTTCCTCTGTGTTCCTGTTCA 214354 29 100.0 36 ............................. AAGTTTAACACAAGACTCATTTTTAATCGTCTTGAC 214419 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 214485 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 214549 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 214614 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 214680 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 214743 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 214809 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 214877 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 214941 29 100.0 36 ............................. TGACTTCTAAAAAAGTATGGACAATGGAACGTGCTT 215006 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 215069 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 215133 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 215198 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 215262 29 86.2 0 ........C....C..A...........G | T [215288] ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGTAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 225070-227566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQC010000004.1 Listeria seeligeri strain FSL L7-1636 NODE_4_length_298186_cov_42.195781, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 225070 29 100.0 35 ............................. ATAACTGTCTTTAATTGATTTTGTTCACTTTCATT 225134 29 100.0 35 ............................. GCATTAGAAATAGCTGTAGAAAAATTTCTTCTTAA 225198 29 100.0 36 ............................. ATCAATCTACTGTGGCGAAAATGAGACTTGCATCAC 225263 29 100.0 38 ............................. CATAACCTAGAAAGGTACAAATATAATGAAAAATGACC 225330 29 100.0 37 ............................. CCAATATTCGTGCGCGTTATAAAGCCATGGGAGTGGA 225396 29 100.0 35 ............................. ATAGATATCCGCTCCTTTCGTACTACGATTTTGGC 225460 29 100.0 35 ............................. TTCATTTGCTGAAATAACAACATGATAGTTTTTCA 225524 29 100.0 35 ............................. AGAAGAAAATAGACCAAAGAAGACGTGTTGTATAT 225588 29 100.0 37 ............................. AGAAGTATTCAGATACTACAAGCATTGGGTGACAAGA 225654 29 100.0 34 ............................. GATGCTGAAATGATAAAACTAATTTCTGATTTAT 225717 29 100.0 35 ............................. CTTGTTACTTTCAATGACATCGTGAGGCTCGATTT 225781 29 100.0 36 ............................. GTTACCGCTGTTTGTGTATAAAATATTCAGTCGACG 225846 29 100.0 37 ............................. ATGTATTGAACAAATTGAAAGGTTCCAAAGCTCCGAT 225912 29 100.0 36 ............................. AACTTTACGACCACCATATTTCAAAACTTTTTCCAT 225977 29 100.0 36 ............................. AAAATAATTAAAAAACGTTTCAATTTCATCACCTCC 226042 29 100.0 35 ............................. TATATGAACGGAGGTTTTGCTTTACACCCGTCAGC 226106 29 100.0 36 ............................. GCGACAAACAACACGTATAAAAACAAAAAATTAGCG 226171 29 100.0 37 ............................. TTTGGACATGATGCGAAATATGTACTAGAGAGCTATA 226237 29 100.0 37 ............................. CGGAGAAGTTAATTCTTTTGCCAGCCATAGGAGCGCC 226303 29 100.0 35 ............................. TCTTTAGTGCTACGATATTTAACGCGTTGCTTACG 226367 29 100.0 35 ............................. AGGGATTTGATAATACCACCAAGCGCTTTAAAACC 226431 29 100.0 36 ............................. GTTGTTGGGCTTTTTATATTGAAAAGTAATATTTTT 226496 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 226561 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 226626 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 226691 29 100.0 36 ............................. TCGTGATTCCCCTAACGTGTTATCTTAATCGAAAAC 226756 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 226820 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 226885 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 226951 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 227014 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 227080 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 227146 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 227212 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 227276 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 227343 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 227407 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 227472 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 227538 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 39 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCATTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAATCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTCAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //