Array 1 28765-25308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPJ010000021.1 Oculatella sp. FACHB-28 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 28764 36 100.0 36 .................................... GCAGATTTTACCCAAGGATTCAGCCAGATATTGACG 28692 36 100.0 45 .................................... TTGTTAGTAGAAGATCTAGCACTATTCAAAGAAATCCTTTGCCTG 28611 36 100.0 38 .................................... AGAACTATGGACTTCAAATCAATTGTTCGCATCTTTGT 28537 36 100.0 38 .................................... TATACGATATGTCGATTTCTTAATTTCAGGCTGTTTTA 28463 36 100.0 35 .................................... ATACCAGCCAAGATCTAGATCTTTGGCGTTAATGT 28392 36 100.0 43 .................................... GTTGATTTCGGCGCAGTAGCGCTCGCTGATCCGCACAGAGTAG 28313 36 100.0 37 .................................... TCGGTTCTGCCGCTTCTACCACCCAGTCAAAGATAAA 28240 36 100.0 38 .................................... CAGCCAGGAAAACAACGTATTCTTTGGCGGAACTTCAA 28166 36 100.0 37 .................................... CTGAAGAGTCGAGTAAATGGGGGGAGTGGGAGCTTGG 28093 36 100.0 40 .................................... CAGAAGGCTTTCCAGGCTTCGATTCTACAAAAGAACTCTA 28017 36 100.0 38 .................................... GGTTGAATAGTTGTCATTTTTAGGCTCCTTTGCCTCTC 27943 36 100.0 37 .................................... TTCTATTTTACTCTGTAAAGCTGTATCCGCTACTATT 27870 36 100.0 41 .................................... TCTTGAAGTTTGTGGATCTGGCGTTGAATACGGTCTAACGC 27793 36 100.0 38 .................................... TTTAAGAAGATCTTCAAGGATTGATTTTCTATCGTCTT 27719 36 100.0 35 .................................... TAAGGTGTACACCTAACAAAAGAAAACCATACTTA 27648 36 100.0 35 .................................... TCAACTAAGGCTAACTCCGCAACTTGATCATCAGA 27577 36 100.0 45 .................................... GTAAGGACGCTCAGCGATCGGATAGTTTCGCAGGGTGTAGGTGTA 27496 36 100.0 39 .................................... CGGATGTTGTTTGACGATTAGCGATCGCTCCACCTGCTA 27421 36 100.0 39 .................................... AATCACACGGGAACAGGGGATGAGTGCGAAATCGCTCAA 27346 36 100.0 36 .................................... ATTTATCAATTACGGCTGTTTAGGACCAATAGGACT 27274 36 100.0 37 .................................... ACGTTTCAACCTTCGACGAGCTAACGCAGAATGTCAG 27201 36 100.0 41 .................................... GACCAGATCGTCATCTTCTGGAGTCTGTTCTGTATAGTCGT 27124 36 100.0 40 .................................... GTTATGGGCGCTAGTTATTGCAACATTGAATTCGCCTCTC 27048 36 100.0 37 .................................... TGATTTTAGGAGCTTTAGAGAGTTTCGGCTAACTATT 26975 36 100.0 38 .................................... TTCAACTGCGTTCAAGATCTCTTCCGTCGTGCGTGTGA 26901 36 100.0 38 .................................... GCGACACTCTTTAGCGTTTCGGTCTTGCCTGCCCCGCT 26827 36 100.0 35 .................................... TAAGCTCCATCAATTGCTCGTTCACTTTTCGCAAT 26756 36 100.0 36 .................................... TGCTGCTTAGGGACTCAGAGGTTGCCAAAGCTGTTA 26684 36 100.0 36 .................................... TAAAGGTACAGGTACTACTAGTATCTGGATTATGGG 26612 36 100.0 42 .................................... TTGAATTCTTACCTGTTTCTCCTGAATTAGTTCTGATAACAG 26534 36 100.0 50 .................................... TGCCAGTTCTAAAAGATAAAGGCGATCGCCACACCTTTCCATCAGTCGTA 26448 36 100.0 39 .................................... TGAGCTATTCTTCCGTAGACGTAGCTAACACGTGATAAA 26373 36 100.0 39 .................................... TAAAAACCCATTTCTTCAGATGGGAATATTGATTAGTCA 26298 36 100.0 40 .................................... CCGACATCTGCCGCCATTCGGTGCGCCATCTCGCCTTCAA 26222 36 100.0 39 .................................... TTTCCTTATTCGTGCGTTTACCTGGTTCATGCTGTTGAA 26147 36 100.0 37 .................................... AAATGCTCTGCCCAAAAGAACAGATAGTTCTTATTGG 26074 36 100.0 36 .................................... GTTACAATTGAACTTCTCAAAGTGAGACTCTAGAAT 26002 36 100.0 39 .................................... TTTTGAAGCATTGGGTCAGGCAATAAAGTGTCTTGAAAG 25927 36 100.0 35 .................................... TCTAGGTCTTTTGGATGCCCGTCCAGGTAGGCTAA 25856 36 100.0 38 .................................... TCAAGGTACTCAACCTGTAAATTGAACTCTTCAGCTAA 25782 36 100.0 38 .................................... TACAGTACTCAATTTAATGCTGGATATTGGAAAATTAA 25708 36 100.0 42 .................................... TCAATATCAATCGGGTTGCTCATAATGCATAGCACCTTCTGT 25630 36 100.0 36 .................................... TTCAGCAATCCAAAGCAGATCAGATAAAGACATTGA 25558 36 97.2 105 .........T.......................... GCGCTCGAATGTATAGGGTTCCCCAATCCCCATCCAAAACCCCTCTGTGACAATATGAATGAGACACCTGAATTGCTGCCTCTATTGGATCTTTAGGCACAACGC 25417 36 94.4 38 ...................A..C............. CTTATCGTTTAGCCGTTCAGCCTTAGCAAAGTTTTGAT 25343 36 86.1 0 T....T.......A.....AT............... | ========== ====== ====== ====== ==================================== ========================================================================================================= ================== 46 36 99.5 40 CTCCCCACTCGCTGGGGAAGCCAATTGAATGGAAAC # Left flank : CTGCGCTGGACTATCAACCCTATCTGATTCGATGAATGCTCCTCTATATTGTGGTTTACGACATCCCCTGCGACAAACGCCGTAAGAAGGTGTCTGATTTATTGGAGGGTTATAGGCAGCGGGTGCAATACAGTGTATTTGAAAGCGTACTAACGGCTAGTAAATATGACGAGTTGCGTAAGCGGTTGAGAAAACGGGTAAAGTCAGAGGAGGATAGCCTACGATTTTACCCAATTTCGCATCATCCTCCGGTGTAGGTAGAGGTGTGGGGCGAACCGCCAGTGACAAAGTTGCCAGGTTCAACGATCGTTTAGGGGAGTTGCGAGGAGTCGGGAAAATGGACGAAGGGCTGATTCTCCCGTTGCAACCCTCGATGTATTGCTATATAGGCGTTTCAAGGATTTTGAACTATGCTATTTAGTAGTCTGGTTCACTCGCTGAACCGATCCCTCGCAAATGCTCTTTGGACTGCTTGCAGAACACGGGTTTTGGTGGAGGCT # Right flank : CGGTCAAGCGACAACCCTCGGTAGAGCGATCGCTTGTAAACTCTGCCGAATCGAGCGTTGCAGCTTCTATTCATCGTCTGAGGCAGCAGGATGGGGCATGGTAGTTAGTTATAAGTAGTTCCAGTGAGGGGTTGAGGACATTCAATCATCGCTGCTAGCTTCTCCGATCGCCTTTAGATACGCCTCAGCAGCAGCCTGCTTAAACACCCCCTTGGTGTAGCGCTTAAACACCCGATCGCTCTTAATCCCCATCAACTCCTTACCAAATAGGGGATCAACCCCTCGCCGTGTCGCCTCCGTTCCAAAGGTATGCCGGAAACGATGCGGGTTAATGTCTTCCACTCCTGAGATCGCCCCCAGTTTCTTCACCATCTTATGCAAGCCCTTGTAGCCCAACCGTTTCCCTGAACTCTTCGGATCCTGCGCCAAAAACATGGGACTCTCCGGTAATGGCTCAAACTTCTCGCCTCGCTGCCGTCGCCACTCCAGATACGCCTCTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAGCCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 42954-44383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPJ010000021.1 Oculatella sp. FACHB-28 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 42954 36 100.0 40 .................................... CTAATTCAGGCAATTCGCTCTGGGTCAACTGAGCAGATTT 43030 36 100.0 36 .................................... AACTTCTATACCTCCTATACCTCCTACACCTCTTAC 43102 36 100.0 36 .................................... CAGACCCAAGCCAAAGCGCAGGCGTTATGCAAAATG 43174 36 100.0 38 .................................... TTTCCGGGTCACTATTTGCCCGCTTGGGAGAATTACTT 43248 36 100.0 36 .................................... ACGTTAACTGTAATATTCATCGCAAAATCACCTCGG 43320 36 100.0 36 .................................... CAGTTGCCGCGTCTTCCACTTTTCTTGATCTCCTGA 43392 36 100.0 39 .................................... TTGGCGTGACCGAGGCAGAGCAGAGTTACGGCATCCCGA 43467 36 100.0 40 .................................... GTACATTAGTTAGATCTCCAAGTAAAGGATATATCAATGA 43543 36 100.0 34 .................................... CCGATAGTTTTCCAGGTGAAAGCTCTGTCAACCC 43613 36 100.0 36 .................................... TGTGCTACCTTTTCCCACTCAAAGATGAGTTGACCG 43685 36 100.0 36 .................................... TCTCAACGAAACCTCTGAATTCTGCTGTAAATCCAG 43757 36 100.0 37 .................................... TAGACACCCCTTGCCTTGAATCGGCGTGGCAGTCCAG 43830 36 100.0 39 .................................... TAGAGTGAGGGCATATCTACTTCTGCCTCACCGTTGGTT 43905 36 100.0 39 .................................... TTACACTGTTTACAGCTATTCAGGGTAAACATCGTCAGG 43980 36 100.0 34 .................................... TTTAAGTGCCTTTCGAGTAGTCTTTGCCATAATA 44050 36 100.0 41 .................................... TCATGCACCCTCGGTGCTTTGGCAGTTGTTCTAGGGTGCGA 44127 36 100.0 37 .................................... ACATATTTTTCGACTAACGTAAAACGCATGATGTTAC 44200 36 100.0 40 .................................... TAATCTTGTCTTCCTGGTAGCCGCGATAGCGGGCTATCCG 44276 36 100.0 36 .................................... AGCACACGCTCAGCCATTCCTTTCTTCAAGAACACA 44348 36 97.2 0 .............A...................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.9 37 GTCCCCACTCGCTGGGGAAATCAGTTGAATGGAAAC # Left flank : AAAATTATGAGCCATATCGAATTCGGTAGAAGGGTATGATGATGTTGTTGTATGTCGTAGCGTATGATATCTCGTGCCAGAAACGCCGAACGAAGGTGTCTAATGTGTTATCTGCTTATGGGCAACGGGTGCAATATAGTGTGTTTGAGTGTGTGCTACAGCTACAACAATTTCGTGAATTACGAGAGCAATTGGAGCAGATAGTGAAGCCGGAGGATAGCGTGCGAATGTATCCACTATCTAGACATACAGTAAGACAAATTGAAATCTGGGGTGGAATACCATTAACGGAGCGGCAGGGTTCGATCGTGGTGTGAGGGTGCGAGGCTGAGAGCGTTGGTGCCAAAGCTAGGTTATCTATTGTGAGCCTCGATAGCAGTTCAGGTAAGGGGTTTAATAGGTTTAAAGGAAGAGCGGATACTGGTTATGTTCTCGATTGGAATTGAGGCTCGCAATTGGAGTTTGGACACTTTACAGACTTTGGCTTTAGAGTATAAGGG # Right flank : CTTGAGAACGCGAACGCGACCGCCTCTTTTTCAACTTGCTGCTCCCCAACGAGTAGAGACCAGCAAGTTGAATGGAAACAAATTACGTTGTTGCTATATATTGATTGCCAGGAGGGTTCCGGAGATATTCCACGTAAGGAACACTTCATACGGATGCTTCTTATCTAGTATTTTTGAATAGTCCTTAGCTATGAGAGTTTAGAAGATAAGAAGCTGTTGAACTTAACCTGGCTCATCCTCCACATTACTCTTTTCAACTACAGCAGCCACAGATTCAATCTCATGCTGCAAATCTTCAATTGAGGGAAGCTTCTCCTTAAATTCCTCTGGCAACGCAGCTGTAGTGCGGTAGGTAGAAACACTAATCGGTTGACTCACGCCACGAAGAGCATATTCAACTACAGCCTTCTTCTTAGAACGACAGAGAACGATACCAATGGTGGGGTTATCAGACGGACGACGCAATTTGTCATCTATAACATTGACATAGAAGTTGATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGAAATCAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 5692-6743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPJ010000047.1 Oculatella sp. FACHB-28 contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5692 37 100.0 35 ..................................... CAGCTGCGCCACCGGCTGAACCACTGCCACCGGTC 5764 37 100.0 36 ..................................... TAATGTGTGATGGGTAAGCGATAGACTGCCTCTGAT 5837 37 100.0 34 ..................................... GCGAGCAAACAAGTGATTGAGTGAAATGAGTAAC 5908 37 100.0 35 ..................................... TAAAAATTTTCCAGATCTAGATCCTGCTACGTAAG 5980 37 100.0 36 ..................................... ACAGATGGAAGAAAGGACGAATTAAAGTTTCTTACC 6053 37 100.0 35 ..................................... CTATCAAACGAAGTTCGGCTACCACCCAGACAAAG 6125 37 100.0 33 ..................................... ATAGCGTAATGCAGCAAAACCCGTGTAGCGGTT 6195 37 100.0 35 ..................................... GAAACACATGTAGGGAAGGATGGATTTGAGAGAAC 6267 37 100.0 34 ..................................... ATCCTGGCAATGCAGCAGATGAAACAGAAGAAAC 6338 37 97.3 35 .....................A............... AGAATACTCACTATCTTTTGGCGATCTTTGTTATG 6410 36 97.3 35 .........................-........... TAAATCCGTGCCATGCAGCGCCAAGAAGTCTAGAT 6481 37 100.0 42 ..................................... AATTATCTCCTACACACATATCAGCGCTGCAACTCGCACTGA 6560 37 91.9 41 ...A............C......A............. TATGTACACCAGCACTAGCAAGATGTCAGACAGCGGTGGGG 6638 37 91.9 32 ...A............C...........C........ CTCATGCAGAGCAGATTGAGTCTAGCACCCTC 6707 37 70.3 0 A.T......AT.......A..TAA..T......G.G. | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 96.6 36 GTCGCAATTGCCTGTCTCTATGGGGGCAGGTTGAAAG # Left flank : TTTTGTACCTTGAAAATCAAATAGCTCAAACAGCGCCGCGACGTATGCTGCTTGCAGTATACGCATCGTGCAAAATTAGGGTTAGTTTGACTGTCGGTAGACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCCGTCGGATGGGAAATTTCGGTTTCTCAGTCGAGATTAAGTCATGGTTGAGGAATTAGTCTGCTTCAATTATGGCGTAGGTGCGCTCCCGGCAAAAAGGGCGCGGATGTACTGCTGTAGTGGCTGCCAAACCACCCCCGACCAAGGGGGAACCCGCTTCTATTCTGAGTTCTGGCGATCGATAAGAGACTAGTTTCTCGAAGCGATCCGCGCAAAGCTTCAAATCAAGATACTCTAAAGGTTTCGGCCTCTAAGGGTATTTGAATCTTGAAGTTTGATGACCTGAAAAGGGAGAGACTAAAGCGATCCGCGCACACGAACCTTGAAATGCATAGCTAGTCAAGGTTTAAGAAATGTGCA # Right flank : GACAGTTCCTACTCAATAGGCAAACTGAGGACAGGTTGCAACACTTATCCCGAAGGTACAGTCTGGGGGGTTATGAAACCTCATCAATTGCCAAAAAGAATTTCTTACAAGCGGAAGTGGGTTGAAAGAGAGCACCGCCCTGTCACCAGGGAGGATGGACAGGAACGCGACAAATAATTTGTCACCAGTGCTTCAGCGACACTAATTTGTCACAACGACACTAACTCGTCACCGATGACAGTAATCTGTCACCGATGACAAATAATGTGTCACTGTACAACTCTACGGGACTGACGGGGCTCGAACCCGCAACTTCCGCCGTGACAGGGCGGTGCTCTAACCAATTGAACTACAGTCCCCTGTTAGGGGCAATATCTAGTGTGCCGAAAGAAGGCGGATTTGTCAAACAAAAATCGAAAATTTCTTTTGGACTTATTACCCAAACCATAAGCTTCCCATAGTCCAGCCTTTAGATGCGGGTGATATCTTCCTGAGCGGTA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATTGCCTGTCTCTATGGGGGCAGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 167371-167040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPJ010000074.1 Oculatella sp. FACHB-28 contig74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 167370 37 100.0 36 ..................................... CGAACGGGAAACTAAGAACTGTTTTGAGGGGGTATG 167297 37 100.0 37 ..................................... AAGATGGGTGAATACGATGTGACACCCTCAGAATCTA 167223 37 100.0 37 ..................................... CTAGCAACTGATTCAAGGAATCCTGACGAGAAGGAAT 167149 37 97.3 36 ........T............................ ATGCGATGTTCAGCAACGGGATCTATTACGATCGGG 167076 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 37 GTTGAGATCGCCGTTTGAGCGGTTCATGGATAGAAAG # Left flank : AGCTGCCCTTGTGGACAGGTCTTCCTGTCAGCAAGTTGTGTTTGTTAGTAGGCTCGCCTTATTAACAAGCCGGGAAGCCATGCGTATTAGAGTTTGCCCTCTAGCAAGTATGGCATAGGTCGCTCCCACGCAAAAGGGTAAAACTCTCGTCGTCAAAGTCGCTTTGGCGGTGAGAGCGAAGGTTACTTCGGTATCAGGCTCACCTTAGTGGTGAGTGTGCTACCACGCAGCTACCGAACCGCCCACTAGAGCTTGGCTTGCCAGGTGATAGGTGGGTATCCACAAATCCTTCACTATTTTGGCAAACCGAAGCGGGAGCATTTTTCCCGGTCAGTTTGCCAAAAGGCTACAAATTCTTTTCTAGTCTGGACTACAAAGATTTTGATTCTCTCTTTTGAGGGTCTGAATTTTGAAAAATTAAGGCGCTTGCCGAGCAATCCGAAGAACTTTGCCAATCCCCTGCAAGCAGCCGGTCTGGATAAGGATCTGAATTAGCTAGA # Right flank : TTCAGAACTTGCTGTTGATTCTGAGACTAGAGTGAATCTTCGACCAAAATTTCAGCAGTTGGCGTATAGAGTTCTGGCTTGTTTGAGTTTACAGCCAGACTTAATGCCAAGTTTTGATTGCCTATCCAACAGTTGGTTAGTGGTAGGTATTGAAAAGAATAAATATGGATAGAAAGGAGTGCTGCGATCGCGCTACAGACGATCGTTTGCCAATCACTCTGCCTACATCCCTCTACAGGGCAGCAAGGGCATGAGTGATTTGTGACAATATCTCCTTAAAACTGAAATTTCAAAGCAAAAAAAGCAGTAAATCAGGAGGTGCCGCTTGAAACCCTTGAAAATACGTTGCTCGACTAAATTCTTTGACAAGAGTTCCTTAAAACTGACAAATAGCTCCTTAACGGACAAAACGGGCGAAACTGTTACCAGAATCTCTTTACATAGAAAATTTGATGGAGAATAGGGGATTCGAACCCCTGACCTCTGCGGTGCGATCGCAG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATCGCCGTTTGAGCGGTTCATGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 187629-184398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPJ010000074.1 Oculatella sp. FACHB-28 contig74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 187628 37 94.6 38 .......T...................A......... CAGCCTCGACCTGGCAAGCCTGCTGATAGCAGCAGGCT 187553 37 97.3 34 ...............................G..... CTCCTGTTTGGAAGAGTACACCTGACCAAGCATC 187482 36 89.2 35 ..................TA...T.-........... CTGGGCAACTCACCCGTCGGTGAAATCATTGGGCA T [187466] 187410 36 89.2 35 ..................TA...T.-........... TCGTAGCCGCGATCGCCATTGGTCGAGTGCAAGGA T [187394] 187338 37 94.6 36 .......G.......................G..... GTCAGTAGAGCAGATGTTTCAGATCTGGGCTGACTG 187265 37 94.6 34 .............T..................A.... TTGGCAAGTCGTGGTCAATGATCTGTGGGGCCAT 187194 37 97.3 35 ...............................G..... GCGGCTTGGGTACAAATGTTCGATGCCGGAACCAA 187122 37 89.2 35 C.......A............A.........G..... CTCAGATCTCTTGGATCTGTAATGCCTAAAGTCAT 187050 37 89.2 35 ........A..........T.C.........G..... TCCTAAACACCAAACAAGCGCAGCAAAACTTTGGG 186977 37 89.2 35 ........A............C.......A.G..... CGGCGTGGCGTTGGCTTCATTCCCTACGATTATCA 186905 37 89.2 36 ........A.....A......A.........G..... CTTTTGCTGCACGGCGTAGGAGATTTCCTACTACAG 186832 37 89.2 34 ........A............A.........G.T... CTTACAGGATTGTTGCCCTATCTAACGGTGAGCC 186761 37 89.2 35 ........A............A.....A...G..... GATAGCACTGGCACTATTTTCAACAACATATTTGC 186689 37 89.2 35 ........A............A.....A...G..... CTAGCCAACCCCTACAAAACGGGGGAAGCGGTTGA 186617 37 89.2 37 ........A............A.....A...G..... GTGCGTTAGACCCTGAGCCAAGTAAACCAGTAGGCAC 186543 37 89.2 38 ........A............A.....A...G..... TTTGGTGCCAACCTGAGATCGTTATTAGGGTTCATCAC 186468 37 91.9 34 ........A............A.....A......... GATATTTTGATTTCCCTTAAGGCACTGATGGGAG 186397 37 86.5 37 C.......A.........T..A.........G..... ACAGCACAGTTGCGGGCAACCTATCCCCGCTTAGCCT 186323 36 81.1 36 ....T..G..........A-.C.G.......G..... ATGAGCAAAAGCCCTCTCAGCGGCGTAACGCTTCTC G [186298] 186250 37 100.0 34 ..................................... TTAGAGCATTGCGAACTGGCTCATAGATTGTCTC 186179 37 100.0 34 ..................................... CTGTTCCAGCTCCGGAGGCGAGGCATCCAGACGA 186108 37 100.0 40 ..................................... CTGCTACAGAAAGAGAGTATGAGGCGTTTAATGCAGTTGC 186031 37 100.0 36 ..................................... CAATCCTACAACCGGATTGTGAGGGAAGAATTTAGG 185958 37 100.0 36 ..................................... TGCCGGGGGATTTGCTGCTTGGCTCAACTCCCGCCA 185885 37 100.0 34 ..................................... CAGAATCTTGGCGGTTCAGATGAAGCTTCTCTAC 185814 37 100.0 36 ..................................... CTCTCATGTTCATCTCAAGAGAGTCACGAAACTCTT 185741 37 100.0 35 ..................................... CAGGCAAGATATGGACTCACGCGCTTGATCTAAGT 185669 37 100.0 36 ..................................... CGCCCGATCGACACTTCTAGCCGATTCCAGTTCGAT 185596 37 100.0 36 ..................................... CAGCGCCATTTTCAAGCGAATCGTCACGGCTTTCTG 185523 37 100.0 36 ..................................... CACGGCGTCGAATCGATTCAGCGCATCCTGATGGAA 185450 37 100.0 37 ..................................... GATGTGCCTCACGTTGTCCTACTTGTTTGGCTGGGGA 185376 37 100.0 37 ..................................... CATCCGGGTCAGGGTGAAAGGCAAACTCATCAGCGAT 185302 37 100.0 37 ..................................... CTTAGAGCGTAGTGGGCTAGAGATTGCCGTGAATCCA 185228 37 100.0 34 ..................................... ACTAGATGAAATTAAGCGGCAACAGGAATTAGCT 185157 37 100.0 34 ..................................... CTTGGCGGCCCGCAGGGCGCTGCCCCTTCTAACT 185086 37 100.0 34 ..................................... CGCTAGGTGTCATCGTTCCACCCCCCCTGCGTTG 185015 37 100.0 35 ..................................... CAGATTCAGAAGCAGCCCGTCTAAAGCTTCAGTCA 184943 37 100.0 36 ..................................... CGGTCGCAGCTGGCGGTTCAGCTGCGCCACCGGCTG 184870 37 100.0 38 ..................................... CAGCGTGATTCCAAGTCCGCGATCGCCTCAACAAAAAC 184795 37 100.0 36 ..................................... CGTAAAATCAATTATTCATTTGACCCCGAAGGCTTA 184722 37 100.0 36 ..................................... CTGCATATGTGCCGCCAGTACGGGCAGGCAACTGGT 184649 37 100.0 34 ..................................... TGGGCAGTCGCCAACTTGACGCAGATCCATCAAT 184578 37 100.0 34 ..................................... GTCGGAGAAGCGATCGCCAAACCCCAACAACCGG 184507 37 100.0 36 ..................................... AAGCAATCCAATGTACTCCTTCACGATTGGGAGTTG 184434 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 45 37 96.0 36 GCTTCAACGGAGCCGCACGCTGAAGGTGCGGTGCAAC # Left flank : AAATTAAACGGCATCGAGGCAGATTGATGCTATTGGACTAGGCTGATTTCTACACATTTCCAGGACTTGAAGCTGCTGTCAAATTTGTCACTATGCACCCATACTTGCGGCTAAGTAATCAGCGAATACAAGCTTCACATCCTTAGGGACTTCAATTCAGCACTACAACAAGTAAAACGTCACTGCACGTTAACTTAGTCGTCTCTCCAAAGCTTCCACTCGTCGCTTTAAATTCTCCAGCTCATCTTGCGGATCTAGAGGCTGTAAATATGCTTTTAACGCCTCGATCGCCATCCTCGAGCGCTCTCCCCGATCGGTTGGCAGAAGCTCATCTATTTCAGGTGGAATTCTGACTGACAAAAGCGGGTTTGGCATGGTGACAGGCTGATGACAACTAATAGTGTGCTGATGATGAGCGATCGCTTCCTTGATGACAGGCTGATGACAAAACTGATGAGACCTGATGACCGCGATCGCCCGCTGCCTCAAGAAATGCATGA # Right flank : TGCGGGCATCTGAAGAACTTACTATATGCGGTTTTCAAGGTTCTAATGCGCGAATCGATACTATGGGGTGCCCAAACACCAGAATTACGGCAAATCTGCTTCCAGAAAAATCCTTGAAAGCGACTCAAACCATGTAATCCAGTATTTGCGCGAATCGATTTCTGCAGCATTCTCTTATATTGCCTACTCTGCAAGGATTTACAGTCCAAACAGAGCTACTCGCATTCCTACACCTACCCACCCGCGCATATATCAAGCAGGTAAAAATATCCCTAAACCGAAGTGAGCCGCATAACCTAAAGCGATCGGGCCTACTTGAGATTCAGCAAACTCAATCTCTAACCAATATCCCCGATCAGATTCCTTTTTGCCATTGCCGTGATAGCGCCGACGCTGAAAAGCTTGCCATCGGTAGCCACTAAACTGCTTCCCTGCTTCCTCACTTAAGCACCTAACCCTCACTAGCAGTTTGCCATCTCCCTGCTGGTAGCCCAGCCAAT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACGGAGCCGCACGCTGAAGGTGCGGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //