Array 1 183631-184854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJS010000007.1 Listeria seeligeri strain FSL W9-0598 NODE_7_length_190162_cov_72.913923, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 183631 36 100.0 30 .................................... TAGTTTTATGATGACCGCAAAAGATGCTGC 183697 36 100.0 30 .................................... TTTGTAATTATGTGAGTGTAAATACTTTTG 183763 36 100.0 30 .................................... ACACATATATTGACGGGAAGCTAGTATCAT 183829 36 100.0 30 .................................... TAAGTGATTTAGAAGAATCAATAAACACGG 183895 36 100.0 30 .................................... TATAAAGATAGTGATACCAATGGATTTCAG 183961 36 100.0 30 .................................... TTTTACCACCCCCACTATGGCATATTTACC 184027 36 100.0 30 .................................... TGACCTGTCATAACGAAAAATCGACCGTCC 184093 36 100.0 30 .................................... CTATCGCACGGGGCAAGACTATAGTGCGTA 184159 36 100.0 30 .................................... TTCTCATTCTAATCATATTAAGTCTTGCGT 184225 36 100.0 30 .................................... TAATGTCATTAGATTTTTTAGACAGTGTCA 184291 36 100.0 30 .................................... TATCTGCTCCCTTTTGTATGTACCAATCCG 184357 36 100.0 30 .................................... ACTTTCTCTTGTGATCATTGTGAAAAGTTT 184423 36 100.0 30 .................................... TCTCCTTAGCGTGTTCTAGTTCAGAATACT 184489 36 100.0 30 .................................... TGGAAATCCTTGCAACCTCCAGCACTCTCG 184555 36 100.0 30 .................................... TTGTCTAGTTACACAGAATACAGTGTGAGT 184621 36 100.0 30 .................................... TGGTGCAATAATAATTTCTTTGTCCCAAGT 184687 36 100.0 30 .................................... ATGCTTTGGCCAATCAAGCTAATTCTTATA 184753 36 100.0 30 .................................... AAAAGATAGTTTGGACTTTCCGGAATTTTA 184819 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACAGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 14009-11900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJS010000004.1 Listeria seeligeri strain FSL W9-0598 NODE_4_length_252595_cov_66.920275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14008 29 100.0 36 ............................. CCATTTCAAAAACAATATCGTTCTTTGTTTTAAATT 13943 29 100.0 36 ............................. ACTGAATAAGACTGTCAAATCCTGTGTGCATATTAT 13878 29 100.0 36 ............................. AAATACGAGTTAGAGACGGGCATAAAAAAGGGCTCG 13813 29 100.0 36 ............................. ACCACTCTTGAAACGATGGCAAACAGCGCTCGTTTC 13748 29 100.0 36 ............................. ATATGTAATCAGTATACCAAACGATTATGCTTGGGA 13683 29 100.0 36 ............................. CTTTAGTAGGCATAGCGTGATTCGTTTGCATTTGTT 13618 29 100.0 37 ............................. TTATAAACCTCTCCTTTTAAATCCGATTTGCAATTGA 13552 29 100.0 36 ............................. AATTCCCCTAATCGGAAATGGGAAAATAGGTGCAAG 13487 29 100.0 35 ............................. TTGCTTCACCTGTAGATATGAATACATGTTCTAGC 13423 29 100.0 36 ............................. TAGCACTAGCTATGCATTAAGAGCAGTCACAATCTT 13358 29 100.0 35 ............................. TACTCTTTCATGCAGTAACGCCTAATTGCATCGAG 13294 29 100.0 36 ............................. AGAGTTGACACGGTTCCAAGAAATCATCAACAAAGG 13229 29 100.0 34 ............................. ATTGATATTAATTATGCTAAGAGGTTATAATGGC 13166 29 100.0 34 ............................. GTATCCGACGAGGAGGAAATTAAATGAACTTTAA 13103 29 100.0 36 ............................. ATATTTGTTGTTAAAAATATCAATAGATTCATTACA 13038 29 100.0 38 ............................. AGTATTATTCGCACGAGCATGGAGCGGAAAGTATGTGG 12971 29 100.0 36 ............................. GCGGGAGCATCTCCTACTTTGTATGACTCTTCGCTA 12906 29 100.0 36 ............................. CACTAAATTCAGTTGTTTGAGTGATGTATATATAAT 12841 29 100.0 37 ............................. GCGTTTTTGAAATCAAATTGACGCTCGTTTGAACTGC 12775 29 100.0 37 ............................. ACTGCACCAGATAGCGCTTCACAAGTATTATTCACCG 12709 29 100.0 36 ............................. ACACCTACTAGCTCGGGCATGGCTGGAAGGGCATGA 12644 29 100.0 35 ............................. AATGGTGCGTCTTCGTCTTGATAAATGTTATCAAA 12580 29 100.0 36 ............................. ACCTTTTCGCTAGTAGACAGGGGTAAAACAGTGATT 12515 29 100.0 36 ............................. TATGTTGTCTGGTGTTGTGCCTGCTTGTATCTGGTC 12450 29 100.0 37 ............................. TAAATCGTTCATTCAATGTGCCCCATGCCCGTGTTTC 12384 29 100.0 37 ............................. TACGACTTTAAGAAGGTGCTTCCCGCAGTGGAATATT 12318 29 100.0 35 ............................. CAAGTAAAGCGATTTTACTTGGTGCCCCCGCTTGC 12254 29 96.6 35 A............................ ATTAAACGAGGACGCAATCGACTCGCTAAAATTTG 12190 29 100.0 37 ............................. TGTCTAGCTGATTACCAGCCAGAATCAGGGTGTAAGG 12124 29 100.0 35 ............................. TTTTTTCAGTAAACGTAATTACTCTCGCCCTTGCG 12060 29 100.0 37 ............................. ATTTATGGATTGCGGCGGCATCTTCTTTTCTGTCAAC 11994 29 100.0 37 ............................. GTGATCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 11928 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGAACGACAGAAATGTGGGAAGCCTTGGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 25630-22617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJS010000004.1 Listeria seeligeri strain FSL W9-0598 NODE_4_length_252595_cov_66.920275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 25629 29 100.0 36 ............................. TATCATATAAATCAATAGTAAATAAGTCTTGCGATT 25564 29 100.0 37 ............................. ACAATTCAATCATGCACTACTTGGACGATCGTCCATT 25498 29 100.0 35 ............................. CATCTCGTCACATCTTACAGCGACCTCGCTACGTC 25434 29 100.0 35 ............................. CATAAAGAAGTCTACCTTTTCATAACCCACTTTGG 25370 29 100.0 34 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTT 25307 29 100.0 34 ............................. AAAATTTACTATCAAATAAAAAATGATTATCTTT 25244 29 100.0 34 ............................. CATACAATGTTGGCTTACTTCCTAAGTCATCTTC 25181 29 96.6 37 ................A............ GAACTAGTAAATGAAGCTACTAAAGCAACGCAGGATG 25115 29 100.0 36 ............................. CGGAATGTGGGGATGCCCTCTACTGGCTTAGGTATT 25050 29 100.0 37 ............................. CGTGATAACATGTATACATAGCCAAGAGACCTAATGT 24984 29 100.0 38 ............................. CAACATATGTTAATTGTGAATCAGGATTTAAGAGATAT 24917 29 100.0 34 ............................. GCGACACTTTCGTTTGTACTTCGATTTCATGTAA 24854 29 100.0 37 ............................. TAATGAGCGGTGCTACTGCTGTAGTGGAAGCTTGATT 24788 29 100.0 36 ............................. AGTGCTACCAGTACAAGGAAATGAAGAAGGAGATGC 24723 29 100.0 36 ............................. ATATACTCACAATTAACAGACTTATTGGAGGAATGG 24658 29 100.0 35 ............................. GTGAATGATAAATTAACACCGTGAGTGACAATACC 24594 29 100.0 36 ............................. CAAGGTGTATGAACTCAATCGTTTATGCCTTGTGAG 24529 29 100.0 37 ............................. TCGTTTAGGTAGTCTTGTGGAATTCGAGGTGACGTTA 24463 29 100.0 36 ............................. AGCGGTGAAGCCATAACCCGACGCAAATCCATACAT 24398 29 100.0 34 ............................. ATGAGTAAAATAGTTTTATCTCAATCTCTAGATA 24335 29 100.0 36 ............................. TTGTTAGAGCCTATAAGCGCGTCTATGGGGTTTACT 24270 29 100.0 38 ............................. AGGGTCTTGATTTGAGAATATCATTCAAAGTAATAACT 24203 29 100.0 36 ............................. TTCCTATCTGTATGAATATGCGTTTTTTGCTCGAAT 24138 29 100.0 34 ............................. GGAACAAAAATCCTCAATCATAGTGAATCTAAAA 24075 29 100.0 38 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACTGGTTTTCC 24008 29 100.0 36 ............................. AAATCCGTCACCCTATATAAGCGGAAATCGGCGACG 23943 29 100.0 36 ............................. ACACGATATCTCCAATGACCACTGTAGTTTCCCACA 23878 29 100.0 36 ............................. AAGGATATGTTAGAGCCTATCCAGAGATGGGAATTT 23813 29 100.0 37 ............................. ATCGGTTCGTATGGTGCGATATTAACATCCGTAGGCA 23747 29 100.0 37 ............................. ACTGGATTTACACAGGGGCGACGAAGCGACGGACTGA 23681 29 100.0 36 ............................. TCAAAATTACTAATCCTGTGAACACTGCTACTACTT 23616 29 100.0 35 ............................. CCGTTTTTGGTGCGGTGGTTGCCCGCCAACATCGC 23552 29 100.0 36 ............................. AAGTCCTAGCTGAGACAATCAAGCGTATGCATGAGG 23487 29 100.0 35 ............................. GATAATCCGAATGTAGGAAAAGTTATTTGGAAGCA 23423 29 100.0 31 ............................. AAAAAAATGGCTTTACTACAACGTTTTTAAT 23363 29 100.0 35 ............................. ATCAATGTTACCTTTTTTGAAAGGGGTAGAAACAA 23299 29 100.0 35 ............................. AATTTAACAGACACAGAATTGTTGCTTTTATGCGA 23235 29 100.0 37 ............................. ATCGGTTCGTATGGTGCGATATTAACATCCGTAGGCA 23169 29 100.0 37 ............................. ACTGGATTTACACAGGGGCGACGAAGCGACGGACTGA 23103 29 100.0 37 ............................. CAACGACAATGGTTACTTTTACAGATATGAAGCGATA 23037 29 100.0 36 ............................. CCCGGATAATCAGGGTTAAGATGCTATTATTGTCCG 22972 29 100.0 37 ............................. TCGAGACTTAGACGACCATCTTCAATGGCTTTCACCA 22906 29 100.0 36 ............................. TAAAGAGAAAAATATTGGCTTATTGGTCACGAGTGG 22841 29 100.0 37 ............................. GTTTGAGCGGTGAATTTAGCAGTGACATCTTGCACAG 22775 29 100.0 36 ............................. GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 22710 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 22646 29 86.2 0 ........C....C..A...........G | T [22619] ========== ====== ====== ====== ============================= ====================================== ================== 47 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 32085-31865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJS010000004.1 Listeria seeligeri strain FSL W9-0598 NODE_4_length_252595_cov_66.920275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 32084 29 100.0 35 ............................. ACGATAAATCTGTCAACGTTTGCAAGCATGAAATC 32020 29 100.0 36 ............................. GATAATGAGCCAAAGATTTCGGAATGGGACAAAATT 31955 29 100.0 33 ............................. TTTTTTCAGATATATGCAACAAATGAATTTCTC 31893 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 99.2 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTAGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGTGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCTGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //