Array 1 119633-118901 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKLO01000016.1 Cardiobacterium hominis strain CHUV0807 isolate CHUV0807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 119632 36 100.0 33 .................................... GCAATAATCGTATTTCTTTTGTTTGTGACAAAC 119563 36 100.0 34 .................................... AAAGATTTATGGGATTTTAATGTGCGTAAGGTGT 119493 36 100.0 34 .................................... AGCTTGACCAGATCCGGCAACGCAATCAGCAAGG 119423 36 100.0 33 .................................... TGGCATAGTTTGGAAACATGTTCACGTTGTTTT 119354 36 97.2 33 ...........A........................ AGTTCGATGCTGGCGGAGAGGCAAAAGACATGG 119285 36 100.0 34 .................................... ATCGTAGCGCTGCGGCTACAAGAGCTATACACGT 119215 36 100.0 34 .................................... TACAATTCGGACGCGCGTTCCACATCAGAGTGGT 119145 36 100.0 33 .................................... TTGCCAAAGCCAAGACAAATAATACCACGAAGC 119076 36 100.0 34 .................................... GCAGAAAAACCCGATATCTTGTCGGCAATACCAA 119006 36 100.0 34 .................................... ATTTTGTCGAGGCTTTTGTTGACGCCGTAGTGTT 118936 36 86.1 0 ...........................A...TTTT. | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 98.5 34 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AAGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAACGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTACGAGCCTACCGCCTCCCCGCTGCAAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCCTTTCCAAAACCACCCGCAAAAAAACAAAAAAACCGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAAAGTCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACACCCCCTGCAACACATTGAAAACAAGGAGAAAAAACACCCCTGACT # Right flank : CTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTGGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACAGTTTAGGCATCTTCAAGCGGTGCGTCACAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGTGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACGGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCGGTTGTACGGCGAAGCGACGCAACGCCGTATGAGGCTTTTGGGGGATTGCTATATATTCTTGAGGTGCCGGTTCTGTCTTAATCAGGCTGGCGATAAAAATCCCATTATTGTGTCTTTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 4490-3761 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKLO01000072.1 Cardiobacterium hominis strain CHUV0807 isolate CHUV0807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 4489 36 100.0 33 .................................... ATAGATGGTCTCCTGTAACAAACAAAAAAAGAA 4420 36 100.0 34 .................................... CTTCCACGCCATAGTAGGGCGTGTAGTACCACAT 4350 36 100.0 33 .................................... TCACTTACACGTTTTAACACGTATCCATTGCGT 4281 36 100.0 34 .................................... GCTACCAATTTTCCTTTATATTCACCTGCCCAAA 4211 36 100.0 33 .................................... AATTTTCAGCCATTTGATGGCTAAAAGTCTTCG 4142 36 100.0 33 .................................... AATTCCCAAGAAATAAAATTTCATGCTGGAACG 4073 36 97.2 34 .......................G............ CTAACAGAAGGCACGCATGGCATACTTTGGTATA 4003 36 100.0 33 .................................... CATTTTGCCATTCTTATTGGGTTTGCCTTCAAG 3934 36 100.0 33 .................................... TTCCCATAGTTTTCTCCTACAGAAAAAACACGG 3865 36 97.2 33 ................................T... TCGGTGCCGCTCTTGGTCATCCATACTTTTTGC 3796 36 86.1 0 ....................G.......T..T.C.T | ========== ====== ====== ====== ==================================== ================================== ================== 11 36 98.2 33 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : CCGCGCTCACCGCCGCCTTGCTCAATGGCGCACCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTACACCGCCGCAGAAAACAGCGGCGAGCTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAGCCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCACAAATAACAACGTTGCGACCACATCCAAAACAAATGACAAACAGCGCTTAAGCGGTGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATGATAATCCCCAACAAAATCCGAATGACAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : AAAAAATGCCGACATTCGTCGGCATTTTTTTATCGGTGATGCGCGCGTTGGATGCGCGGCGGGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCCTCCAGCGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGGCTGCCTTCGGCGACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGGCGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 26794-29136 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKLO01000026.1 Cardiobacterium hominis strain CHUV0807 isolate CHUV0807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26794 32 100.0 34 ................................ GGCAACACGTCGCCGGTCAGCCGGTCGGTCTTGT 26860 32 100.0 34 ................................ ATCCGACCGAGCGAGCTGCGGCTAATGCGATGGG 26926 32 100.0 35 ................................ TTTTCCGCGTCCTTGCGCTCCTTTTCGCCCTTGTT 26993 32 100.0 34 ................................ AGCTTTTTGTCGTTCCTGGGTGTTCAAGCCGTAT 27059 32 100.0 34 ................................ ACAGGTGGCGTGATGACATACGCCACGGTCAGCG 27125 32 100.0 34 ................................ AACGACCCGAACGCCACCGCCGCACGCCGCCTGC 27191 32 100.0 34 ................................ AGGTTGGGTACAGCGACCGGGTAACGCCGCATGG 27257 32 100.0 34 ................................ CAACAGGTCGCGGCCATTGACGATGTAGATGTTG 27323 32 100.0 34 ................................ CTGCGCTGGAGCAGCGATGGCACAAAAATCGAAA 27389 32 100.0 34 ................................ TTCGCGTCCGCGCGGCGTATTGGCATATAGCGCG 27455 32 100.0 33 ................................ CTTAATGCGGCCGGTCATGACGGCCTCAATCCC 27520 32 100.0 34 ................................ TGCGCCATGCGCGAAAGGGCTTCATGGCGTGTGT 27586 32 100.0 34 ................................ AAAAATCTGCGCTCGCAACTGTGGTGGATGCTGC 27652 32 100.0 34 ................................ AGCCACTCGCCGGGGCGGAAGAAACCTTCCCCTG 27718 32 100.0 34 ................................ TTTTTAAAGAATCCACAATCGGATAAAGAAGGGA 27784 32 96.9 33 ........T....................... ATTCCCGTGACTGGCACGAACGGGCGCGGGTAG 27849 32 100.0 34 ................................ TTCATGGAGGTCGGCACTTGCAGCGGCGGGTTGG 27915 32 100.0 34 ................................ CAGAAATAGGGCAATCATAGAAAATATGCTGGAT 27981 32 100.0 34 ................................ CGGTCAATCCGGAAATTGCCGAATTTGCGGCGGC 28047 32 100.0 34 ................................ AAATGTTGAACAAATAATGTTTACAATGTTTGTC 28113 32 100.0 34 ................................ TATGAGGCTCTCGTAAACCTCATACGGGTAGTAG 28179 32 100.0 35 ................................ CCGCGTGCGGCAAGGGGAATTTGTAGTTGGCGGTT 28246 32 100.0 34 ................................ TCCCGCAGTAACCGCTGTATCCGCTGGTGTGGCG 28312 32 100.0 34 ................................ ATGAAAGTGGTTTTGCCGCTGCCGGTAGCACCAC 28378 32 100.0 34 ................................ TGCTTCATCACGCCGCAACCTTGCCTGTTTCAGG 28444 32 100.0 34 ................................ TGCTTCATCACGCCGCAACCTTGCCTGTTTCAGG 28510 32 100.0 33 ................................ TATCTGCCACACAGCACCTCCTACATGGAGCGC 28575 32 100.0 34 ................................ GCCGAGGCACGCCGCGCCGCGCTGGAAGATGGGC 28641 32 100.0 34 ................................ GCTTGCTGGTGTACCGCCGTGTTTGTTGCGTCCG 28707 32 100.0 34 ................................ CCACTCGGCGGTCTGCGGCTGGCCGACGCCGTAA 28773 32 100.0 34 ................................ GTCAGCTACCACCCCGACTACACCCCGCAGACCA 28839 32 100.0 34 ................................ CCGGCAACACCCATCGAGAGCGCGTCAAACGCGC 28905 32 100.0 35 ................................ GGCAGGACGTCGGCAACGACCGAACGCGCTAGCCT 28972 32 100.0 33 ................................ ATCAGCAGCGACCGCACCCCGGCGAAATTTAAC 29037 32 100.0 33 ................................ ATCATGGTCTCCAGTCAATCAACTACTGGAGAC 29102 31 84.4 0 ...........C.T.......-.T....T... | CTCG [29128] ========== ====== ====== ====== ================================ =================================== ================== 36 32 99.5 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTAGTATTGATTACTTACGACATTTCCTTTTCAGATACAGCAGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTACGGGTGAAATATTCCGTTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTATATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGCGGGAGTATTGGCGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATGGTATACGAATTGCATCTTGCCCCACAGTACTTTGCCTGCTTGGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGTCATTGCATGATGGCA # Right flank : CCCAATAATTTTATTGTGTTCTCCCACTCAATATGAGCATCCTGTCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCCGGGTATTGTGGAATTCACAGCGCGTGCCACAGCCTGCACATGACGATGCAGCAATATTGGGAAAATAAATTTTATTGGAAAACAGGGTGGTAAACAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGGCACCATAAAAGAAAGTGGCGACATTTTTATGGACAACCCGCGCCGTACAACCGCGTGCTGTCTTAGGCAGCGCGCCTTGCCTGAGGCTTTCGGTATATCGCTATAGTACGGGCACCCACCGCTATCGTCGCAGGGTTTTCAGGTGTTGTTTCCGGTGCATCCGGCAATGAAAGTCTGTTTCTGCGGGAATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 31751-32115 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKLO01000026.1 Cardiobacterium hominis strain CHUV0807 isolate CHUV0807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 31751 31 100.0 35 ............................... GATGTGGTCTATGTTGATCAAGGCAAGCCGGTGCG 31817 31 100.0 35 ............................... GCGCAGACAAGGCAGCCGCCTATGCCAATACCTTG 31883 31 100.0 36 ............................... TGCGCCTTGGAGCGGTTGGTCTTGTAGTCGTCCACG 31950 30 96.8 37 ........-...................... AGGCAGCAGGACGAGGAGAAATTCAACCCGGTGCGGG 32017 31 100.0 37 ............................... GCGGTGGTCATCCTCACCGATGACAACACGCACAGCG 32085 31 93.5 0 ..........C...................T | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 98.4 36 TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : AGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGCCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCCGCCAGCCACAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGTCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGCAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTTAT # Right flank : TTTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGCTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTCGGCTGCGGGTGTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGCAGGTCGTTGGTCGGTTCGTCGTTGGCTTCATCAACTGCCGGGAAGAGGGCGCGGCAGGTGCGTACCACGGTTTCCTGGCCTTCGACCAGTTCGCGAATCATGGTCAGCGCGTCCGGTTTGCCGTTGTTTTCTTTGAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //