Array 1 1670250-1662607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041387.1 Rhodopseudomonas palustris strain GJ-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1670249 32 100.0 35 ................................ ACCCACTGCCGCCCCTCCCCGGCCCGGTGCCCCTT 1670182 32 100.0 36 ................................ CTCGGCAATGTCGACAGGCTCCTTGCCGCAAAGCAC 1670114 32 100.0 34 ................................ ATCTGCGGCGGCTTCAGATCGACGACGACGGCTG 1670048 32 100.0 34 ................................ CGCGAGCTGTGGGATGCGGCGCGGCTGAAAGACC 1669982 32 100.0 34 ................................ ATCTGCGGCGGCTTCAGATCGACGACGACGGCTG 1669916 32 100.0 36 ................................ TTCGATATTCTGCCAAAGCGGCCGCAGGAATTCGAG 1669848 32 100.0 36 ................................ CACGGCGAGGTCCTGAAGATGCTGGACGGCATCAAC 1669780 32 100.0 34 ................................ GTATTCCCACACCGGCTCCACCACCGCGTAACTG 1669714 32 100.0 34 ................................ ACGATCCCGAACAAGCTGATCCTGGCGACCGCCG 1669648 32 100.0 36 ................................ ATCAACGGACCGCCGAGGAGTGATGAGATCCATGAC 1669580 32 100.0 35 ................................ ACGTCCGGGTTGGTCTTCTTGATCACGTCGAGCAG 1669513 32 100.0 32 ................................ ACCGCGCAGGTCGGCACCCGTATCGCGGGCTC 1669449 32 100.0 33 ................................ CAGTACACGATCGCCGCGTTCGCCTTGGGCGGG 1669384 32 100.0 34 ................................ CGATTGCACTTATGCAACATATAGCAGACATCAC 1669318 32 100.0 35 ................................ GTGTTGTCCGGTTTTGTGCTGACAAAGCCCTTCGC 1669251 32 100.0 34 ................................ AGCGAAGGATAGCGGCCGATCGGCGCCAGGGGCG 1669185 32 100.0 34 ................................ GCAAGCTGTTCGGCGATCGCGTCAAGGACGTCCG 1669119 32 100.0 35 ................................ TGCCATTCGCGCGGCGCGTTCGGCTTCACCAGCGA 1669052 32 100.0 35 ................................ ACCGACTAACGCAGTCATCCAGTCCGATGTCGACC 1668985 32 100.0 34 ................................ GTCGCCATAGGCGCGGCGGCAGATCATGTCGACC 1668919 32 100.0 34 ................................ AGCCGGAAGCACACGCCGACGCGATCCCCCTCGA 1668853 32 100.0 34 ................................ CGTCCATCGCGATCGTGCCGGAGTTGGCGGTATT 1668787 32 100.0 34 ................................ ACCTTCGATGCCCGGCGTCGAGCCCTGCCATTCC 1668721 32 100.0 34 ................................ CTTCATCCTTAGCTTCAGGTTCGATCAATGGTGC 1668655 32 100.0 35 ................................ CTGCTCGAAATCGACCCGATGCCGGCGCTCCGCGA 1668588 32 100.0 33 ................................ GGGATCGTGAACAGCACGCCCTCGACCACGCTG 1668523 32 100.0 35 ................................ ACTACGCAAGAGGGTCTTGCATACGTTGTCGGTTC 1668456 32 100.0 35 ................................ ACCTCCAGGTCCTGAGACCCGAAGATCGCTCGAGC 1668389 32 100.0 34 ................................ ATAAAACTAACGATTTGACCGCCCGAAGGGCGAG 1668323 32 100.0 33 ................................ GCTGGCATGGGTCGGGCAGTATCTCAGCGCAAC 1668258 32 100.0 33 ................................ ACCTCGGCATTGCGAACGATCGCCGCAATCTTG 1668193 32 100.0 34 ................................ TCGCGCAGGACAGACGCCATCACCTCGATCGGAT 1668127 32 100.0 34 ................................ ACCGACAACCTCACGCCTTCGGCGCGGAGAAGCC 1668061 32 100.0 34 ................................ GGCGTCGGACAAGTCGCTGTCGGCACCCTCAGTA 1667995 32 100.0 33 ................................ TACAACGGCTTGCTGGCACAGCTCCGCAACGTC 1667930 32 100.0 34 ................................ ATTCCAAAGTTGCGGTAATGTTCCGCGTCTCGGA 1667864 32 100.0 34 ................................ GCGTCGCATCTTTCTAATTTCTGTAATGTAACGT 1667798 32 100.0 35 ................................ CCGAACCACTAGTGCGAGTTACATTGACCGTCATT 1667731 32 100.0 35 ................................ GTAAACACGATCAGCAAATGATTTCATTCCGGCTG 1667664 32 100.0 35 ................................ ATTTGCTGCCGGGCCGCACGCTGCTAAATATCACA 1667597 32 100.0 34 ................................ ATAAAGATAAATCCAAGCTAACTGTGCAGCTTGT 1667531 32 100.0 35 ................................ TATTCTCGCGGCTGTATTCGACGCGGTAAAGCTTC 1667464 32 100.0 34 ................................ ACCGCGATCGCCACCGCCGCCATCTCGATCGCCG 1667398 32 100.0 34 ................................ ACGGTCGCCGGCGTCACCGAGACCCGCGTGCTCT 1667332 32 100.0 34 ................................ GGGGAAGGCTCGGTGCAGATCGCGGCGGAGGGCC 1667266 32 100.0 35 ................................ ATCACGATGGTTGTCGTCGCCGGCGCGATCATCGC 1667199 32 100.0 35 ................................ ACCACCTGATGAATTTGCGAAGGAAGGAACCAAGA 1667132 32 100.0 35 ................................ ATCACCAGCCGAGAGACTGTGTCCGATATCGTCGG 1667065 32 100.0 34 ................................ ACTCACGACGTCACAGTGATCACCCCGGTCGACG 1666999 32 100.0 33 ................................ GCGGCAAACGAACAGATGGTCCGCCGCGCTCGC 1666934 32 100.0 34 ................................ AACGACTGGGGCAACGACGGCGAGACGCCGAATG 1666868 32 100.0 33 ................................ GTCTGCGATGAAAAGCGCATGATCGTGCCGCCT 1666803 32 100.0 33 ................................ GAGGCGATCGACCTGCGCCGGCCGGCGCCGCTC 1666738 32 100.0 34 ................................ AAGGTCCGGCGAATGTGCGAGCACTCTTCGCCAT 1666672 32 100.0 35 ................................ CAAGAGAGAATGACCTCGGTCGTCTTCACCGAGTA 1666605 32 100.0 33 ................................ GGGTGGGTCTCAGCAGACGCGACGGTCGCTCTT 1666540 32 100.0 35 ................................ GTTGGCGGCGTCGACCTCGCGCCGCAAAGCCGTGG 1666473 32 100.0 33 ................................ CTTGGCCAGATGCTCGGCCAGCGCCTCGACATC 1666408 32 100.0 34 ................................ ATCGCCCCTCCCCAGCATCCACCGTCACCGGCTC 1666342 32 100.0 35 ................................ AGATACACCGTGTAGGATGTCACCGTGCCGCGCTT 1666275 32 100.0 34 ................................ CAGAACTGCACCGGATAATCGTCGTCGGCTTCAA 1666209 32 100.0 34 ................................ GTCACCGACGCGAAGATGATGATCGTCTCGCCGG 1666143 32 100.0 34 ................................ CTGCGCAAGCAGGAGACCGCCGCCGACGCCACAG 1666077 32 100.0 34 ................................ CCGGCGCAGTCTCCAACCAAGGATGTCGCAGATG 1666011 32 100.0 34 ................................ ACGGACGATTTTGACGACTACATCCTGTATCTCC 1665945 32 100.0 32 ................................ TTGTCGCAGCAGGGCGTGCGGGATTTTGCGGA 1665881 32 100.0 34 ................................ ACATCGAATCCGGCCGCCTTGGCCTCGGCAAAGA 1665815 32 100.0 33 ................................ CTCTACTCGTGGGTCACCGTGATCGTCGGTGTC 1665750 32 100.0 35 ................................ GGCTCCTACGATCTGCGCGATCCGCAGGCGGAGAC 1665683 32 100.0 35 ................................ CGGCGCCAATCGCCAGAACAACAAAGGTGGTGGCG 1665616 32 100.0 33 ................................ CGCCACATCTCCTCGGAGATCGCCTTCGGCAGC 1665551 32 100.0 36 ................................ AGCAATTGACCAGACCGGAGCAGCGCTTGGCGTACC 1665483 32 100.0 33 ................................ GCTCAACGGCCGCGCATTGCGATCGTGCGTCGC 1665418 32 100.0 33 ................................ CTGCCAGGCATCGATCCGCACCAGCTCGAGCGC 1665353 32 100.0 34 ................................ TCCGATGCGTCGATCATGCTCGGCACGACGAAGA 1665287 32 100.0 34 ................................ CCTGTACGAGCGGGTGATGTCGCGATGAACGCTG 1665221 32 100.0 33 ................................ CATACCGAAGCACTGAAGATGCTGGACAACATC 1665156 32 100.0 36 ................................ TTGCTGGTAACACCCCATTTCTTGCGAGCTGCACGG 1665088 32 100.0 34 ................................ CCTCTCCACCAGCACGCTTGCGCAAGCGCCTGGG 1665022 32 100.0 34 ................................ ATCGCCCCTCCCCAGCATCCACCGTCACCGGCTC 1664956 32 100.0 35 ................................ CACTTCTCACGTCGCCGCGCCCGCTCCTGCTGGCG 1664889 32 100.0 36 ................................ ACCGAGGACGCGATCGATTCGGCCAGAATGAACGAG 1664821 32 100.0 35 ................................ CGGCGCCAATCGCCAGAACAACAAAGGTGGTGGCG 1664754 32 100.0 35 ................................ TCGAGCTGGAGGTCGAGCGCAGACCCTCCGTCTCG 1664687 32 100.0 35 ................................ ACCACCGCGCAGGGATATGCTCCGACCATGGTGCG 1664620 32 100.0 34 ................................ ACCGAGGCGTGCGAGGCTCTTGGTGGCGAGCGGA 1664554 32 100.0 33 ................................ AAGACGGCAGCGTTGCCGTGGTGGCGGCGCCGG 1664489 32 100.0 34 ................................ TCCGTGACGTCGGCGAGGGCGGCGGCATGGTGTT 1664423 32 100.0 34 ................................ ACGGCCTCCGCGGCGAGGCCGGGCTTGACCTCGG 1664357 32 100.0 35 ................................ GCCAATTCGATGGAGTTGATTGTCGAGGCCAGGTT 1664290 32 100.0 33 ................................ CTTGGCCAGATGCTCGGCCAGCGCCTCGACATC 1664225 32 100.0 34 ................................ GCCATCCGCACAATGTCGAGCAACTCAAGAATCT 1664159 32 100.0 34 ................................ ACCTGATCCTCCCTCACCTGACTGGAGCCTGCCA 1664093 32 100.0 35 ................................ CCGTGAAACCTCACGGGAGCCTCCGATGTCGCGCC 1664026 32 100.0 34 ................................ GCCAGCGCTTGCTGGCCGATCGTCTCGCCACGCT 1663960 32 100.0 34 ................................ TGCCCATTCTGCGGGCAGAAGTATCAGGAAGCCT 1663894 32 100.0 34 ................................ ATGCACGGATCGTGCACGGGATGGACGGCGAGGA 1663828 32 100.0 34 ................................ TCTCCGTCCGCAAAGGCGTCGATTGCTGCGCGAC 1663762 32 100.0 34 ................................ GCGACGATCGCACTGGCAGCGGTTTTCCTTCGCA 1663696 32 100.0 33 ................................ ATCGACGATGCGCGGCTGCAGCCGGTCGCGACG 1663631 32 100.0 34 ................................ ATACTGTCGAAGATCTTCGCGAAATTGTCGCCGA 1663565 32 100.0 35 ................................ GGATTTCCGACGCCATAGACCCGGTTGAACAGCAC 1663498 32 100.0 34 ................................ AGACCGTGACAATCAAGCTCGCTCAGTGCGCCGA 1663432 32 100.0 34 ................................ GGTTGGGAAGGCGGCCGCATGGCCTCGCTCTACA 1663366 32 100.0 33 ................................ TGTATCGCGCGGCCATGGCCGTACTCAATATGG 1663301 32 100.0 34 ................................ GCTTCGGCGACGTCCGGCGCGGCGTCGGGTGGCG 1663235 32 100.0 34 ................................ CAGTGCAGCGCGAAGTCATCGGCGGACGGGCGGC 1663169 32 100.0 35 ................................ ACCGAGGCCGACGCGGCCTCGCTGTCGACGGCGCG 1663102 32 100.0 35 ................................ CGGCCAAAGGTGTCGCTCGTCAGCAAACCCAGCTC 1663035 32 100.0 34 ................................ ATCGCTCCGGTGTTGCCGGGGGAGACGATGAAAA 1662969 32 100.0 35 ................................ GATCCTCTGGTCGGTCCTGGCGGCTCTCCGAACCC 1662902 32 100.0 34 ................................ TCGTTGGCGCGAACACGGTCCCAGCCAGACGCGA 1662836 32 100.0 34 ................................ GCGGCGGGCGTGATCGACAATGACGCGACCCTGG 1662770 32 100.0 34 ................................ GGCAGGTCGGGCAGCGCGGTGAGCGCGGTGCAGC 1662704 32 100.0 34 ................................ ACCGTCAAGGTGCCGCAGCCCGGCGCGGCACCCG 1662638 32 71.9 0 .....................C.CCCGCCGG. | ========== ====== ====== ====== ================================ ==================================== ================== 116 32 99.8 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : CGCGCGTATGATCGACAGGTGCCGCGATGCTCGTGCTCGTGACTTACGACGTTCGAACCAGTGAGCCCGGCGGTCAGGCGCGGTTGCGGCGCGTCGCCCGGGCCTGCCAGGACTATGGACAGCGTGTGCAATATTCGGTGTTCGAGATCGAAGTCGACCCGGCGCAATGGACAGCGCTGCGCGCGCGGCTCGAAAGCCTGATCGCGCCGAAGCACGACAGCCTGCGCTATTATTATCTGGGCGCCAACTGGCGCCGCCGCGTCGAGCACGTCGGCGCCAAGCCGGCGACCGATTTCGGCGAGCCGCTGATCGTCTGACAGCACGCGCGAACCACCAGCACACACGCCGCCCCCCGGAACCTTCGCGCCGGCACAAGCCTCTGACGCACAAGTCGGTTTTCGTCCCCCGTCGTGCTTTCCCCGCAATCCCTCCCCGCCTCCTCTGAGGTTCGCGCCGGCCAGCTCACTTTGCTTGCAGCGATAATCGGTTATCGTCCGGCA # Right flank : GGCAGCAATAACACATCGACTGCTTGACAAGAACGGCAGCTAGGGCACTACATATTGTATTCGCGGTCTCTCGAATCGTTTAATCGAGGGCTAAGAGGGAATCCGGTGCGGCGTTACCGCCTAAGCCGGAGCTGCCCCCGCAACTGTCAGCGGCGAGCCGACGTCATCAGGCCACTGGGAGCAATCCTGGGAAGGCAGACGAAGGCGACGACCCGCAAGCCAGGAGACCTGCCGCGAACAACCAAACGTCCCTGGGCGGGGTGTCCCGGTGGGTCGCTTGCTTCCGTGCGTACGGCGCTCCGTACGACTCTTGCACGCGCCTGCCTGAACCCCGGCCCGCAATTCGACCCGCGGGGTGCCGATGCCTGTTTCCGACCAGACCAACCTTCCTCGAGCGATCATCAAGCGGAGCGGCGCTGAAGCGGCGTTCGACAGTGCCAAGATCCGATCCGCGATCGCGCGTGCCGGACAGGCGACGAGGGAGTTCGGCGAACTCGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //