Array 1 30937-29250 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019793.1 Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30936 29 100.0 33 ............................. AATGTGCCGTCTGGCGATACTCACGCTGACGCT 30874 29 100.0 32 ............................. GGGTTTCCTCAGCCTCCACAGTGGGCCCAGGA 30813 29 100.0 33 ............................. TCAGGCAGTTCTTCACCACAGAGGGGGAAAAGT 30751 29 100.0 33 ............................. GAGATGGAAGATGCGTAGGTTGGCTGTCTTGGC 30689 29 100.0 32 ............................. ATATGGACATTCCCGGCAGCGTTCGCCTCTCA 30628 29 100.0 32 ............................. ACCCGTTCCAGGCGCTGGACCAGATCCCCGCG 30567 29 100.0 32 ............................. GGACGCTACGCGGCGGCGGTCCAGGCGATTGG 30506 29 100.0 32 ............................. CGGATGGCCGCCGCGAGGACGGGCCCCACCAC 30445 29 100.0 33 ............................. GGGGACGTGGAGAGTGGGGTCATCGCCACCCAG 30383 29 100.0 33 ............................. TTCTTGACCCCGGAGGCCATCCTCGAGGCCCAA 30321 29 100.0 32 ............................. AGGGGAAGGCGCCTTCTACGAGAAAGGGAAGG 30260 29 100.0 32 ............................. ACCAGCGTCCCCGTGGCGATAAAGAGGAGGCC 30199 29 100.0 33 ............................. GTGGACTGGAGGAACCTCCTCCGGCACACCATC 30137 29 100.0 33 ............................. TTGAGCCAACGCCGCCGTCAAAAGAACCGCCAC 30075 29 100.0 33 ............................. CTCAATCTGGCCGATAGGTCCATACCAGCCATC 30013 29 100.0 32 ............................. GATGGCCGCTGGGCCGGCTTCGTGACCCTCGG 29952 29 100.0 32 ............................. AGATTTCCCGGCCGGGGCCCCTGCCCCTTCAC 29891 29 100.0 32 ............................. GGGCTCGTCCGCAGCTCCACCAACGAGATCAT 29830 29 100.0 33 ............................. GTCCACGCGGAGCGCCCCGAGTGGCCCAAGGGC 29768 29 100.0 33 ............................. CTGTAGGGACCGATCTGAAGGAGCAACATCTTC 29706 29 100.0 32 ............................. CAACCTCCAGCGGGCCCGCAGACCAGACGACC 29645 29 100.0 32 ............................. ACCTGGCGGCGGGGATCCCCGCCGCCGGGGAC 29584 29 100.0 32 ............................. ATGGAGGTCATCCGCAAGGCCGTGGAAAACAA 29523 29 100.0 33 ............................. AAGGTTATTCACTCCTTGGCCTCTGCCCCGGCC 29461 29 100.0 32 ............................. GCGCCCTTGGCCCTCCAGTAGGGGAAGAGGTA 29400 29 100.0 31 ............................. AGCGCCGAGACCGTGGAGGAGTCCCGCAAGC 29340 29 100.0 33 ............................. CTCTTCACCCAGGACGGCGTGAACCCGTTCGCC 29278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAAGCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATCGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAAAGCCCCCGGGCCAAGCGCTCCACGGGAAAGCCAAGGTCAAGGAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCACCCTGGCCTTTTCCCCCCCGTTCGGGCGCTGGGGAACTTGACAGGAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCCCACCTTGCGCTCCGCTTCACGGTAGGCTACCCTGGAAGTAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCGTTTTTCAGGACACCCCCACCAGACGCCTTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAAGCCCTCCTCGCCTGGCCCAAGGAGCGCTTCCACGCCTTCGCCGCCCGGGTGGGCCTTAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTCCTCCCCGAGCCCCTGCGGGAGGCGCTCCAAGGGGGGCTTCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGGAGCTTTCCCTTCAGGACCTAACGGGCAAGGACCCCAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40684-41696 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019793.1 Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 40684 29 100.0 34 ............................. GATATGGCTTGGACTTCGTATACGCGTACGTCTC 40747 29 100.0 32 ............................. TCGCCTGGACCATCAGCGAGCTCGCCGAGGTC 40808 29 100.0 33 ............................. CTCCTGGGCGAGTTGGACGAGCGCCCGCACGTC 40870 29 100.0 33 ............................. TCCACCCCGGCGTAGTACCGCCAGAGGATGACC 40932 29 100.0 32 ............................. GTCTGGATGGTGTGGGCCGTGGTGTACAGCTC 40993 29 100.0 33 ............................. GCCCTCCGTGTAAGAGGTGCGGATTTTGTGGGC 41055 29 100.0 33 ............................. CACTGGTGGCATGTGTTGCCCGGGGCGCTCCGC 41117 29 100.0 33 ............................. AGGCCCTATCCGCCGTGGGGAAGGACTGGAGGC 41179 29 100.0 32 ............................. TCCTGGGAGGCCCCCCAGGACCTCGCGGACGA 41240 29 100.0 32 ............................. CTTTCCTCACATTCTGGCGGAAAGCTTTGCTG 41301 29 100.0 32 ............................. AATCGCCTTGCGGGTAGAGGCGTCCGGCACAA 41362 29 100.0 32 ............................. CAGGCAGCGTAAGACGCAGCCCGTCACCTGGC 41423 29 100.0 33 ............................. GAGGGAACCATGAAGCAGGTTAGCACGCAGGCA 41485 29 96.6 32 .......T..................... TCCGGGGCCTCCTCCCCACCTTCTAGGGGCTC 41546 29 89.7 32 .............AC......G....... GGGAGCGCCCGGCACCTCGCGGCCTTCAAGGT 41607 29 93.1 32 .............AC.............. ATCTCCGATCTAGAGGCTCAGGGGGTGTTCTG 41668 29 86.2 0 ........T....CC..........G... | ========== ====== ====== ====== ============================= ================================== ================== 17 29 98.0 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGACCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGATCTTACCCGTTTTCTGATAGAGGTGGACACCGGGGTCTTCGTGGGCCGGATCAGCGCCACGGTGCGGGAGCTCCTTTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTGGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTCCTGCGAGACTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGCGCGGAAGGCGGAGAAGCTGTCTAGGCAAGTTGAGAGGTACAAAAAACGGCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGTCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCTCCACCTCTCCCCCGTCCAGGGTCTCCACCTTTCCTTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCTGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCAGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCTTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 59957-60297 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019793.1 Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 59957 36 100.0 39 .................................... GAGGTGCGAGATGCGTAACTGGCGCGCGGCTTGGTACGA 60032 36 100.0 38 .................................... TGAGCCTGAGCCTGTACCGAAGTCTTCTTTGCCATAGT 60106 36 100.0 43 .................................... CCCTTGCCGGAGGCGTAGGCCTTGAGCGTAGCTTTCACCCCTC 60185 36 100.0 41 .................................... TACCTAAGCCTTACCATGGGTAGCGATCCCAATACTCCTCC 60262 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGGGTTTTCCCGTCGGGGGACGGGGCATGGAGCGTGCACCCGTCCAAAAATTGGGCCGCCAGCCCCTTGGGGGGCATGGGCACGGGCCAGCCCGTAGGCTGAAGGTGGCCTTTCTGGGGCGGGGGGAGTGCACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACAGGCGTTTTTCACGCTTTCACAAAGCGAAGTAAGTTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTGCACCGTTTCAGCGAGATGCTATAATGCCCTTGTCCGGACCACCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCACTTTTTCTTTTCATCGCCCCTTCCTCTTGTGGCTTTGCATCGGTGTAAATCCTCAAAAACCCCTGTTATTCGCCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAGCGGCGCTGTCCAGGACGGAGTTCTTTGGGGGGTACA # Right flank : CTGTCTTGCTTGTCAAGCGACCTCTTGGTGCGGCTGGGTCGCGTAGTGCTCCCTGAGCCGTCCCATCGTTCGCGCAACAGCTTGTGCGCTACGGCCAAAAGCGCCTGCCTCGCCGCCCGGAGGGACAAGAACCCCCTTTGGGGGCCCTATTTTCGCGAAAGCTACGTTTCGCGAAAAAGAGACTCCACTGCCCCACCCCGCAGTTTCTTGGAAATCCACCGGCACTAGAAAGGACGGAGAAGCCTTTCGGGTACCCACCCCTTCCCAAGGACCCGCGGCCCTCCCTTCAAAAGGGTGGGGTTCCTGCCGGTTATCCGGCAGGAACCCCAGGCGACCCGGAGCCTCTTACCCTACGGCTTCTTGGACGCTGCGGGCGCGGGATGGGCCGCCTTCAGGAACACCAGGCTCCCGTCCTTCCCCAAGGCCACATGCCGGTTCTTGAGGAGGACGCCCAGGCTATAAACCCGCTTTCCCACCTTGACGACGAAGGCTTCCAGCTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //