Array 1 1091879-1082224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008822.1 Metallosphaera sedula strain CuR1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1091878 24 100.0 39 ........................ CTCTTCAGGAGAGACCGCTTCGTCCAACAGCTTTCTATA 1091815 24 100.0 39 ........................ ATACTTTTCATGTATTGGTAAAGCGTAGTGTTCTGGATT 1091752 24 100.0 42 ........................ TTATCTGAAGTGAAAATATATACTTGAGTTTCTCCATCATAT 1091686 24 100.0 37 ........................ CACTTTTCGACTACATTAAGTAATTTCTTTTTCACTG 1091625 24 100.0 39 ........................ GTTGTCGCCCCCTATCTTCTGGCTAGGATTTTGCCAAAT 1091562 24 100.0 39 ........................ TGCTAAACCTCACAAAATACAGCTTGTATTCTCTTCTTT 1091499 24 100.0 40 ........................ GATAAAGTTAGGAAAATGTTTGATGAAATTTACAAATATT 1091435 24 100.0 40 ........................ CGTTTGTTAGAAACTATCAAGAATTTGGCTTATAAATTCT 1091371 24 100.0 42 ........................ TAATGAAAATATGGATAATATAAATTGTGGAAGATGGATAGT 1091305 24 100.0 40 ........................ GCTGACATTTTTTTCACTAAAATATAGTTCTCTCTTCTCA 1091241 24 100.0 39 ........................ TTACTGTATGTGAACACATAGACCTCTGTCAAACCGTCA 1091178 24 100.0 40 ........................ AATTTAATGTTGAATTTTCCGCCTAAACCGACTGGGGCTA 1091114 24 100.0 40 ........................ AAATAATGAAGATTATATTTTCCCCACTACGTTTTTGGGT 1091050 24 100.0 41 ........................ TCTTCTTCTTCTGTTGATCTAAATATTGCGCTAAAACAAAC 1090985 24 100.0 45 ........................ CTTCTAAAAAGTTTTCAAAACTATCCTCCTACTAACTAATTATTT 1090916 24 100.0 41 ........................ TGTTTAAGCAAAAAAAGAAGGCGCAAAGCGCCGAATAACTT 1090851 24 100.0 41 ........................ GAATGATTTGCCTTAGTTGGAATGGATCAATCACCACGTGT 1090786 24 100.0 44 ........................ GGCACTTTCATTCCGTATTGTTCTAGCAGAGGCGCGAACACTTC 1090718 24 100.0 42 ........................ AGGAATTTCCAATTAATCTATCATCTAGGAAAAAAAATCCTA 1090652 24 100.0 43 ........................ AACTGATGTCTATGCTGTTGGGTATCACAGTCCCAGTAAATCG 1090585 24 100.0 40 ........................ GATTTGGGATTAAAGACCTAAATAATGTCTCCGATCAACA 1090521 24 100.0 41 ........................ TGTATATTTCTCTATTTCTAACAAATACTTAGCTTCCGCCT 1090456 24 100.0 42 ........................ AAAGAGTACATTAAGCAAAAGTATAACGCTGAAATATTTTCA 1090390 24 100.0 41 ........................ GCGACAAGTTAAAAGATGTTTTCATCCAATAATTTATCGTG 1090325 24 100.0 38 ........................ CTTATTGCCCAGCATCTCTTCCAGATAATCCATTGCGT 1090263 24 100.0 38 ........................ TCCTGTTAGTGTGGCGAAATTGTTTATGATGTTAATAG 1090201 24 100.0 42 ........................ TTTATACATATGTCATGTCAAGTATATAAATCTTTCTCTCTC 1090135 24 100.0 41 ........................ CCCTAACATTAGCGCTTGAAGTAGTTTTTGAAGGCATTTGC 1090070 24 100.0 41 ........................ CCATCAGAACAACTATGGCAGGTGTCAACGTCAGTTATGAT 1090005 24 100.0 39 ........................ ATGTTATTGTCTGTACCTTTGAACCACCTTTCCCAATCT 1089942 24 100.0 45 ........................ GTTGGCCTTCCCATCAGCATCAGTAATTGGTAAACGTATTCCCAT 1089873 24 100.0 40 ........................ TTTGCTCCAACGCTTCATTCAATTCTTCTTTACTTCTCAT 1089809 24 100.0 40 ........................ TCCTGTAACCTCTGCTTGAGAACAAATGCAATCGCTTGAT 1089745 24 100.0 39 ........................ ATGACGAATGGAAGGTAATTCTTGACGCTTTAGGATTCA 1089682 24 100.0 39 ........................ TACTCATCTTTTAGCTTTGATCTAGCGTATGCTGGCAAT 1089619 24 100.0 36 ........................ TCACTGTCGGAGTTCCATCCGTGGCCGTCAATTGGT 1089559 24 100.0 41 ........................ AATGAGAATTTTTTACATTTTTGGATACCGATAGAGACAGT 1089494 24 100.0 39 ........................ TATGATGTCGTCAGCACGGAGGCTGGGCGCACCATACTA 1089431 24 100.0 40 ........................ CGCTGATTCAATAATGATAATGATAGTAGAAAACCTAACT 1089367 24 100.0 43 ........................ CTATTCCTATGAAATTAGTTAGCAATAGGGTAATTACGGACTG 1089300 24 100.0 41 ........................ TCAAGTAACACATTTAATGTGACGATTCATGTAACTAGCTT 1089235 24 100.0 40 ........................ CTACTGTTAGTGCTACCACTACCATGACTTGGTGGGGTGC 1089171 24 100.0 37 ........................ TACACAAAATAGTAAGTTTCCGTCGTCGGTTGTGGCT 1089110 24 100.0 40 ........................ AAAGAAGTTGAGAACAAAGAACCTTTAGTCATAAGTGAGA 1089046 24 100.0 41 ........................ CCTTCTTTTTTCCTTGTTTATTAAATAGGAACATCCCATAT 1088981 24 100.0 39 ........................ AACGATCTTGAACGTCTGAACGTCTACTGGGAGAGTGAA 1088918 24 100.0 39 ........................ ATACACAGGTGGTTAACATGGAAGTACTAAGGTTCCAGA 1088855 24 100.0 39 ........................ GGCAGAACAGAGGTATGCGTGGCAGAAACTAAGCGGGGG 1088792 24 100.0 41 ........................ ACTAGATACGCCATTGCTTCTCTCACGCATCTTTCTGCGTT 1088727 24 100.0 39 ........................ AAGTTCACTGGGGGCGTGGGGTTTAACGTTAATATCAAT 1088664 24 100.0 44 ........................ GGTGAAAAGGAAAGAGAACGGGCGGGCGAAACGGGGGCGATTTG 1088596 24 100.0 40 ........................ TTATATTTCTGCCATTTTCTGTAGATAATGCCCTGGGAAT 1088532 24 100.0 40 ........................ TTTAAGCGTTACGGCTTAGAACCATTCCCGGCGCCCGATG 1088468 24 100.0 42 ........................ GCTTCGTTTTGCCTTAGCAATAAGGCTGTAGCACTTTGTTCC 1088402 24 100.0 38 ........................ ATCCATTTCGTGAATAATGCCTTGTCTTCCACGTCAAG 1088340 24 100.0 40 ........................ GAACACACGCCTTTGCCCAGGCATGTGATAGCCTCGTACG 1088276 24 100.0 40 ........................ TTTTCTACTCAAAATTGTTGAGTAGAAAATCAAAAGACAA 1088212 24 100.0 41 ........................ ATTTCTCTGTTGGCTGTAGGTTTTGAATTTCCTTATCTGTA 1088147 24 100.0 40 ........................ TTAAAACCTCAATTTCTCTTGCGCCGCTTTCCAGAAGCAA 1088083 24 100.0 40 ........................ ACTTTACGTATTTTATCGTATGAGAAAGAGAAGAGAAAAA 1088019 24 100.0 40 ........................ TATGTATTAGCCATTTGATTTTGTAAAGCAGTTCCTGCTT 1087955 24 100.0 40 ........................ TAACGCCATCCTTGTATCATGACTATATCATTATGGAGCG 1087891 24 100.0 39 ........................ AGATGAGTGACCTAATACGTCTGATATTCGCCATGATAA 1087828 24 100.0 40 ........................ TAGGATTGCGTCCTACCTGAATGCCGTAACCTTTCAGGTG 1087764 24 100.0 39 ........................ CTCTCATGAATTTCCCCACATAGGGAGCACGTCTTAGAA 1087701 24 100.0 39 ........................ AAGCCAGAATATCTTAAGATAACACCTAAGATGTTAAAT 1087638 24 100.0 38 ........................ GAATACCTCTCCAATCAAAAGCCAACGTCCCACTGAGG 1087576 24 100.0 43 ........................ CTAGATGAGCAGTACAAGGAGGCAAGGCAAAAGATTGGTCCGT 1087509 24 100.0 42 ........................ AGTTCTACCGCTAGGTGCAAAGGGGTGTAACCATCAGGGAAG 1087443 24 100.0 37 ........................ CTACCCTCCCATCCACCTTTTTCATGAGGTTGAGAGG 1087382 24 100.0 41 ........................ TTCTAGTAATGTGGAGCGGACATGGATTTCATCTATTTTAC 1087317 24 100.0 40 ........................ AACCCCTGACCGAACTCCCTAGCCAATTTCATTAGATCGA 1087253 24 100.0 36 ........................ TCTCTTCCTTAACCATCTTCTCGATGGCTCTTCTGA 1087193 24 100.0 39 ........................ ACATGAGCGGGACGACCATCACCCCTGGGTCGTGTCCGT 1087130 24 100.0 36 ........................ TGAACTCATCAAACTCTTTCTCTTTGCCGTAAAGCT 1087070 24 100.0 39 ........................ AATGCAGGGACCGCTTTCCAGTACGATTCTGCAACAGTT 1087007 24 100.0 42 ........................ TGGTTAAATTCTGCATTCAATTTTTATCAAAATCTAGCATGT 1086941 24 100.0 40 ........................ TTGAGATTCATGATTGCAATGACGTCACGGTCGTTTTCAT 1086877 24 100.0 42 ........................ CAAGTTGAGCCAGGACCTCCTCAACTTCTTCCTCTAGGGTAT 1086811 24 100.0 41 ........................ TCTCAAGAAGAAGTTAGAGTCTCAGCCAGAGACTCAGACCG 1086746 24 100.0 40 ........................ TGAATCATGGAGAAGAAAATTTGAGAAAGGAAAAGCAAAA 1086682 24 100.0 41 ........................ GAACCTACTGGCAACTACATGAAGATTAAAGCCAGCAGACT 1086617 24 100.0 40 ........................ TACTGTGGGCCGGTGCGACCCACGGACTCAATACGGTTAG 1086553 24 100.0 42 ........................ AGATCGAGATGATTTTTTGAGAAAAATTCTAACTAAATATAA 1086487 24 100.0 38 ........................ TTTACATTCAAGACTTATTCATGGTAGATATAGCGAAG 1086425 24 100.0 40 ........................ AATATGACAGAATAATAAGTGTTGCAAAAGACTGTATGCA 1086361 24 100.0 41 ........................ TCCTTGACGGAAGGGGTATTTCACCCCCTTTGAACCCCCAT 1086296 24 100.0 40 ........................ TAATGTTCTTAGTTAATTGTTCTTTTCCAATTATCTTAAA 1086232 24 100.0 39 ........................ GGGTCAATGCAGTAATATTAGGAGGAATACCACAAGCTG 1086169 24 100.0 40 ........................ TTAAGGTGATTGCAGGGTTATATACTACCCTTATTCTCTT 1086105 24 100.0 41 ........................ ATGTAATTAATTTAAACTATGAAGGAGAGTTGGTTTATTCA 1086040 24 100.0 39 ........................ AGGTGGATATGAAGTTGTGTAAGTCATGAAAGCTAAAGT 1085977 24 100.0 42 ........................ AAGACTGGACCTCCTCTCCTCCCTAACCCTCTGGACTTGTCT 1085911 24 100.0 42 ........................ AACTAAAGAGAAATGACTACGTCAAGAAGGAGGTCCAGAGCG 1085845 24 100.0 42 ........................ TTTCTTATTATACCCTCATTACCAGTAAGAGCTACTCCTTGT 1085779 24 100.0 36 ........................ TCCCAAACTGATGAAGAATCCCTTGTCCTTTATTCC 1085719 24 100.0 40 ........................ ATTACTACTTTCTCTTACGTCGTTCCTTAAGAAATAGTAA 1085655 24 100.0 41 ........................ GAAAAGAAGCTTCCTACTCCTCCTATTGCATTTTTTACGCC 1085590 24 100.0 43 ........................ AGTAGGACAGCAGCTCCCTGCTAGAGTGGGAGAACTTCAGGTA 1085523 24 100.0 39 ........................ AGGCAAAGTACTTGGACTTCTTTGATGTAGACATGTCCA 1085460 24 100.0 40 ........................ TCAATATCTCTACCATCATATTAAGGACATAATTGACCAT 1085396 24 100.0 38 ........................ CACCGAACTTTTCAAGATTCGAACCCGTAGTCGTATTG 1085334 24 100.0 40 ........................ ACTCCATCAGGACCCTCAAGGATGAGACCAACACTCATTG 1085270 24 100.0 40 ........................ TTACCGGTTCACAGTATTCCTCTAGTTTCGTTCCGGTTAT 1085206 24 100.0 43 ........................ TCAGTTTGCAAGCAGACTAGGTTGTGATGTATTATGGTCCTTT 1085139 24 100.0 44 ........................ ACAGGGACTTCAGGCAGTACGCTCTACATCACGGAGAAGGACGT 1085071 24 100.0 38 ........................ ATTCACGAAACGTTTAATTGTATAACCGCAAAAAAAGA 1085009 24 100.0 39 ........................ TTTTTGGAAGCGTAAGTGATCAATGCATATCTTAACGAG 1084946 24 100.0 41 ........................ GTTCGAAAACCCTAGTCCAGCAGGGCAGGCTGGACAGTTGG 1084881 24 100.0 38 ........................ TCTGAGAATTAGACCTGCAACGAAAAGGCTGATCGTAA 1084819 24 100.0 40 ........................ GCTAAGATATCTTGAGTGACTACCTTGAGAGCGTCATATG 1084755 24 100.0 39 ........................ GTAATAATATATTTACATTCAGGGAACCTTTGGACCCCG 1084692 24 100.0 43 ........................ TTAATGAAGTTGTATCCTCAAACTCATAGGGGACCACTATGGG 1084625 24 100.0 42 ........................ GTCAAACTCTTTCTAACCCCCCGCTCACGGGGGAAAAATTCG 1084559 24 100.0 39 ........................ TCGTCCTCGACCAACCGCTCTATCCTCTCCGCGTCGAGA 1084496 24 100.0 45 ........................ TACAGTGATGAGTATCTTGATGAGTGTTTTGATGAGGGGGATGAT 1084427 24 100.0 41 ........................ GTACCTAATCTGAACTCTACACGGGCTTCCCCCACTAACTT 1084362 24 95.8 40 ................A....... TTCCCGCGTTGAAGAATATTCCTTCTCAACTTGTCATATA 1084298 24 100.0 39 ........................ TTCCTTCCCCAAGTTCGTTATCCCCACAAACAACACTTG 1084235 24 100.0 39 ........................ GGTACATGTCCTCGTCTTCGGGTTCAGATTCACACAACA 1084172 24 100.0 40 ........................ ATAGTTTCGAACATACTACTAGTGATCAGTGGTTTATGAC 1084108 24 100.0 40 ........................ AGATTAAGATAAATTAGAGCGACTTCGTAGTCTGCATGAA 1084044 24 100.0 41 ........................ TTTCACCATCTCGTTGTAACTCGTGAACCCAACGGTCCTAA 1083979 24 100.0 43 ........................ AAAGAAAAAAAGATCAATTACAAACTACATAAGACGAAAATAT 1083912 24 100.0 40 ........................ TAATCCCAGGGCCTTTCGGTCTTTGACTCCACATCTTCAT 1083848 24 100.0 40 ........................ TAACGATTGGAACTGAGCCGTCATCAGATACGAAGGCTTT 1083784 24 100.0 41 ........................ TAACTTTCACGATATACTCGCGTCATCCAATAACCGTATAA 1083719 24 100.0 41 ........................ TTCCCTTATTATTTTGTTCCACTCTTCTCCAGTAATTTGAT 1083654 24 95.8 39 .............G.......... TCATTTTTTGGTTTTGTATTTCTACTGTAACTTCAATTA 1083591 24 95.8 40 .............G.......... CTCGTGGTCTCAACTAAGGGTGGATCGGCTTCAGTGACCG 1083527 24 100.0 39 ........................ AGTACTTTACTTTGTGAATGGAGGAACATGGAAAGTAAG 1083464 24 100.0 39 ........................ ATTCCAAGAAGTTATCAAACAATTCCGTTTGTGAACTGT 1083401 24 100.0 40 ........................ CCTCGTCTGGAATCACTAAATCTTGCTCGTCAATTATTGA 1083337 24 100.0 42 ........................ TCAAACATGAGTCTTGTCAAAACTTTCACGGCACCGAGTGGA 1083271 24 100.0 39 ........................ CCTGCTCCTCCTGATCCATTCGCTGACGATGTACCTGGA 1083208 24 95.8 39 .............G.......... CTTGATACACCAATCACAGTGAGTAGTAATACACCGATG 1083145 24 91.7 40 .C...........G.......... GGAGCAAACGGGCAAAACGGAGCCGTGGTGGTAATCGCAT 1083081 24 95.8 39 .............G.......... TCTTTATTGCTATCTGGATTGATAGTTTTCCGTAGAACT 1083018 24 95.8 39 .............G.......... CTAATAACTGACTCTCTATCACCTTGACCATTTTTTGAA 1082955 24 95.8 42 .............G.......... AGACTGTTTTCCAATTCATTATGATAACCTTAATGAATCACG 1082889 24 95.8 40 .............G.......... AATTTTTTCTCTAACTTTCTAAGTAAAGCCTTATCATGTT 1082825 24 95.8 40 .............G.......... ATGAAAAGAATAGGTAGATCACTTTTTGGCATCATTTGAT 1082761 24 95.8 41 .............G.......... TCTAAAAATTCAATCTTCTTTTCAAGTATACTTTTTCTTCT 1082696 24 95.8 44 .............G.......... CTTCTGCTCGGTATCGTCTAAGGCAGGATTCGGTGAATCCTCAC 1082628 24 95.8 39 .............G.......... TTCGACTCGATTAGCTTCCTTACCTCTGCCAATTTCAGC 1082565 24 91.7 39 .............G.......G.. AGAAGGGTTCTGAGAAATCCCTGTAATCATTAGAAGTAA 1082502 24 95.8 40 .............G.......... AATTGCTCAAAGACTTTTTGGAGTTTTAGGTTTTGGGTCT 1082438 24 95.8 40 .............G.......... AATTGAACTAGGGCGAGAATGCCCAATATTATACCTATTA 1082374 24 91.7 41 C............G.......... TATGCGTTTTTATTACATTTTGATAGGCCGTGTCAAAATCA 1082309 24 95.8 38 .............G.......... TCACCTTCAACTGCCGAGACCATGCAGTGGTATAGAAT 1082247 24 91.7 0 .........T......A....... | ========== ====== ====== ====== ======================== ============================================= ================== 151 24 99.4 40 GTTAATCTCCTATAGAGTTGAAAG # Left flank : ATAACTCCAACCCCTGAGCTCCTCCTCAATCGGGTCCGAGGCCCTATACGAGTGGAGGAGCCTGAGTTGTCTCGTAATCTGCGACCTCATGGGTTTATGTTGGTTGGGAATCTAAAATTCATTCAAACGTGGGGGTTGAGAGACTTCCCGTGCAGTGGCGGGATTGGAGTGGGGGTGGACGGTGTGTGGGATGGGCTGATCCCTAGGAAGACCGGGACAGAGGGGAGTTGATCGTGAAGTTTAGGGCGTGAAATGATACAATTTTAGTTTGATGGGAGTAAAATATTGATTCCCTACTATAGTCCTTGAGTTAGGCTGTCCTACTATCGTGACCAGGTACGTCGTTAAAGGTATCTCATTACATTTATAGAGAATACGTTAGTGTCCCGGGAGTTGTAGGGATCTGACGAGATCTGATAAAAATTGTAAGACAATGAGACAGAAAAGATTATATAAAGGAAGAAGATAGATAATGAATAGAAGTAATATAAAAGGTATCA # Right flank : AATCACACGTTCTGATATCGGAAAGTTTACCTTTTTTACTCCCTCCCAATTATTCCCTGTGACATGCCTCATAACTCCCATCGGGTTCGACGAAAAGTTCATCGTGAGAAGTTTCCTTCGGCACGGCAAATCGAGGATCCAGGAGGTTCTCCTGGTTAAACCCTCCGCGAAAAACGAGAAGACGGAGATCGCAATCTCAAACCTGATGAAACTCCTGTCCGAGGCCTCGACCCCCCTCCAGACCCTTGAGATCAATCACGACGATTTCGTCTCCTCAGTCTCTAGAATAATGTCCTGGGTTAAGAGGTCGACTCACTCGGACTACCTCCTCAACCTATCCAGTGGAATGAGAATAGTCGACCTTGAGATCCTTACTGCCTTCCTTCTCCTCCAGATTGACGCTGAGGTTGAGGTTGAGACCGAGACCCTTCAGGGGCTCGTGACTTTCAGGGTGAAGGACCTCATCCCATATCAACTTGAGGAGAGCGACCTCAAGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1097295-1100857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008822.1 Metallosphaera sedula strain CuR1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1097295 24 100.0 41 ........................ AAGGCGAAATGCAGAAGATGTAGTAGCAAAGACAGCTGTGA 1097360 24 100.0 40 ........................ CAACTCTCATGATTATAATCCCTCCATTTTAAAATGTATT 1097424 24 100.0 40 ........................ AAGTTTACTTCAGTTAATGAGCAAGTCAGCGCAGTGCTAA 1097488 24 100.0 39 ........................ TTATATTTACGGGTAAGACGGCGTTAACGAAGCGTTAGG 1097551 24 100.0 42 ........................ AGTTTAAACGTTACAACTCTCGTTTCCAAACACCTCGTTTGT 1097617 24 100.0 40 ........................ AAAACGAGACCTTTGGCTAAATAAACCGCACCATAGATAT 1097681 24 100.0 42 ........................ CTATGAAATTGTCGCATTCGTATGCAAAATATTTCTGGATCT 1097747 24 100.0 39 ........................ TACATATCCTTCAATTGTGATCTAGCGTATGCTGGTAGT 1097810 24 100.0 40 ........................ ATTTGGATTTTGATAATTTTCTTTTCTTTGTCATAATAAT 1097874 24 100.0 42 ........................ TATAGTTAAGTCATTTTTTCTTCTTGTGGTGGTATTACCTAT 1097940 24 100.0 40 ........................ TACCAATTTCTGCTAATAACGTGAACGTACTCTCGCTGAG 1098004 24 100.0 37 ........................ TAACTTATCCCCTACATGATTGCGAAAAAACAACAAT 1098065 24 100.0 40 ........................ TGTTTTTAAGGACCTGGAGGCAGTCCGCCATTTACCCCAC 1098129 24 100.0 39 ........................ TGAGAACAGCTGTCTTCACTGCTGACCATCGAGCGACCT 1098192 24 100.0 40 ........................ TTTTCTTTCTCATACATTACTCTTATTAGTTTACTAACAA 1098256 24 100.0 41 ........................ CTTCTTGTTCTTCTCTCTGCTTTACGCCTTCTTGTTCTTCC 1098321 24 100.0 41 ........................ TCTGTACGTGGGTCAATAAATGTCACAATCGCGTACTTCTT 1098386 24 100.0 39 ........................ ATAATAATCAACGAGGCAAACTCCATGTTCTACAAACCA 1098449 24 100.0 37 ........................ ACTAGGCAAACGATACTGAGACACAGCGGGACTGCAG 1098510 24 100.0 42 ........................ TTGGAAACACTCCGTATCAATCCTTTAGACTGCAACTCCTCA 1098576 24 100.0 40 ........................ AACATTAGTGTAAAGCCTGCAGCGTTTGCTGGAAGCACGG 1098640 24 100.0 44 ........................ TCTCGTCCTTAAATTTCAAAACTTCCATGTAGCTCGCCCCCTCT 1098708 24 100.0 40 ........................ CTTATGTACACACCACCTGAGCTAAGGAGTGTCTTAATCT 1098772 24 100.0 41 ........................ AAATGGGACGATGAGGGTGTTCAACAGATACAACACCACAG 1098837 24 100.0 44 ........................ ATTATATATAATATATGAATAATAGCCCCCGTGCTTCGCGCCTT 1098905 24 100.0 44 ........................ TCTTTTGCACTATCCATTCCGACCACATCTCTCGGCTTCGATAC 1098973 24 100.0 40 ........................ TTGACGACGTGCTTACTCTTCTTTCCAGTTCTTGTTACTT 1099037 24 100.0 43 ........................ TTATCGATAAAATCGTAAACGATTTGTTGCCTTATTACGTGAA 1099104 24 100.0 42 ........................ ACACCTCTACTAACTTTACCAAAGCCTATCATAGTCCCAACG 1099170 24 100.0 38 ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 1099232 24 100.0 42 ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 1099298 24 100.0 45 ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 1099367 24 100.0 44 ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCACGTT 1099435 24 100.0 40 ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 1099499 24 100.0 41 ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 1099564 24 100.0 41 ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 1099629 24 100.0 39 ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 1099692 24 100.0 39 ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 1099755 24 95.8 40 .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 1099819 24 95.8 40 .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 1099883 24 95.8 41 .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 1099948 24 95.8 40 .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 1100012 24 79.2 32 .............G.....TTC.C GAGGATGATTATAAGCTCAGGGAGAAGATTGT 1100068 24 95.8 38 .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 1100130 24 95.8 41 .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 1100195 24 95.8 39 .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 1100258 24 95.8 37 .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 1100319 24 95.8 40 .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 1100383 24 95.8 41 .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 1100448 24 95.8 38 .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 1100510 24 91.7 40 .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 1100574 24 95.8 41 .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 1100639 24 95.8 41 .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 1100704 24 95.8 40 .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 1100768 24 95.8 42 .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 1100834 24 91.7 0 G............G.......... | ========== ====== ====== ====== ======================== ============================================= ================== 56 24 98.2 40 CTTAATCTCCTATAGAGTTGAAAG # Left flank : TTTCACAATGTTTGGACTGATGAAAGGGTGATATCACCTCCGCACGAAGGGCATGAGTGGTCCCTAGTCCTTAGTACCAGATTCCTCTAAAACTAGTTTAAGTCAGGACATAAACCTCCGTGACTCCTTATGGTAGACCCACATTCGTTAGCTTATCCTCACCCTTTGCATCTTGCGCCCATCTCGCGTCTGAAAATAAGTCTTATATGATCGACCTTAGTATCCTGTGAACCTGGCATGAGCAGATCCATGTATTAATTGTGTCATTAAAAATTTATCTGAAAGTCTCTTCCCGGGAGCCGTCATGAAATGACGCTGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAGATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTTGGGGAGAAAATGGTAGATGTGTTGAAGAACACAAAAAGTTTCA # Right flank : GATTACACTAAATACTACGTAATATGAATAGGTACTGTGAGACGAGAGTGGACTTTTACCTTTGCGGACGGTGTTAAATTTCAGAATCAGTATCCTCTACTACGAAACAAGCCCGAAAAATTACCCACCATCTTGAGGCCCCGTTCATTACATTGATTCTTGGATCTCGTGAGATAACAACTCGTTAAGTTTCCTAGGTCACGATTCACTCAAACAAGAAAACACGTTCATTATTTCCACTTCCGGTATCAAGAGGACATCTTGAAATTGAAGTGACCTAACTCTCCTAAACATGAGGAAAGACCAGGGAACGCAGAGGTTTCCACATCACGGGATCTGGTTATCCTCTCGATATCTTACCCGTCCTCACCCCCTCTCGCCTTAAATACCTCTGAAAGTACTTTACCCCATGGAAATCGTAAAGGCCAGCCTTACCTTGATTCCCACAAGGGACGTGATCCTACCGCCGGTGACCTCGAAAGTCCTGAAGTACCTTATCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : CTTAATCTCCTATGGAGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1104309-1114654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008822.1 Metallosphaera sedula strain CuR1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1104309 24 100.0 40 ........................ TCTCAATCTGTAGGCCAAGCCACTATTATCATAACTCCAC 1104373 24 100.0 41 ........................ TGAATGCAAGCCTGTCGTACATTACTATTCTACCTTGTTTG 1104438 24 100.0 42 ........................ TTTGTCTGTTTCGATTGGAATAATTTCAGCGTTACCATAAAC 1104504 24 100.0 39 ........................ TACCTGTATGACAATTCGCTAAAAATTTAAACTATCTAC 1104567 24 100.0 39 ........................ TCATTTCCATTTCTTTCAATTTATCAACTATTAACCTAA 1104630 24 100.0 42 ........................ GAGGAAAAGAAGGCTAACGCATTAAAGGCGTGGCATTTAGGG 1104696 24 100.0 39 ........................ GACCCATATTTAGGAGTTATGTCAGCTATATCCAAGCAT 1104759 24 100.0 41 ........................ TCTTGATTTCCATGTCTATCCCCTGCGCATATCTCATATCA 1104824 24 100.0 39 ........................ CATGAGCTGTCCCTCCGATAAGATCATATTTGATGCAGA 1104887 24 100.0 40 ........................ TGAAATAACCGCCGACATCCAACGCTGGAAATTTATATCT 1104951 24 100.0 40 ........................ AATCTTAAACCGCAACCTTTTATAAAATCTTCAACTGTAA 1105015 24 100.0 40 ........................ CCTATAACCTAATAGCATAATATTTACTATGTCCCTCCAT 1105079 24 100.0 39 ........................ TGCTCACCCTCTTCAGTTTCTGCGCCTTCTCCCTCACCG 1105142 24 100.0 40 ........................ TTGATATTTGAGTGCCTGCGCAAATTCCTCAAACAAATCT 1105206 24 100.0 40 ........................ TCTTTAGTCGCTATAATGTCGGGTAATGGTTGCTTACCAG 1105270 24 100.0 46 ........................ TCTGATTCTGATACCTCCTCTTCGCTCCCTTCTTGTTCACCTTCTT 1105340 24 100.0 39 ........................ CTTTTTTGCAACCTAGAAAGCCTTGTTGCGAAATATGGC 1105403 24 100.0 38 ........................ ATTGCTTCTACTTCTGCTGGCATTTTTTTCCACTAAAA 1105465 24 100.0 41 ........................ GCAATATTGGATAGGATTCATATCATCCAAGTTGCAATAAA 1105530 24 100.0 39 ........................ GCAATCATTGCGAAAATAACGGGGCATAAACGCCTGGAC 1105593 24 100.0 41 ........................ TAGGTAGAAGGCAGAAGGAAGTTTTAGCTTCGATATTGGAA 1105658 24 100.0 41 ........................ CGTTTCTCTAATCTCGCCAACCTAGTTGCGAAATATGGCTG 1105723 24 100.0 39 ........................ TATATTTCGTCGCTATATCGCCCAGAAGACGTCTGATAT 1105786 24 100.0 40 ........................ GTTCACGAGTAAAACTGTATAAGAGTGAGGTAACAAATCT 1105850 24 100.0 40 ........................ AAAGTGAAAGTGATGCTGGAGGTGAGGGACAGACTGGGAG 1105914 24 100.0 39 ........................ ATTTGGATCTTGAGAATTTTCTTTTCTTTGTCATAATAA 1105977 24 100.0 43 ........................ AAGGCGTATAACAAAACGGCGTATGTCATATGTTCTGCTTCTA 1106044 24 100.0 39 ........................ AGAGAGGGCTTCACTTACAAGTAAATCAGCACACCTTAT 1106107 24 100.0 40 ........................ GAGAAGTACCCGGGCGTATCCAGGCTAAGCCAGTTATCAA 1106171 24 100.0 40 ........................ TTTGCCATGGAAGAAGCGAAATGTCAGTGTTGGTAGCTCC 1106235 24 100.0 42 ........................ GAATAGTAAGTAAATCATCACCTGCAATTATCGTGTATTTTT 1106301 24 100.0 35 ........................ ATATAACGAAAGAGCGTTCACAAAAGCGTTAGTAG 1106360 24 100.0 37 ........................ ATTGCTATAAACCACATCATGGCTCCTAGCATCAACG 1106421 24 100.0 40 ........................ TACAATCTTATCAACTATGTCTTCCAAAAATGGTGGTAGA 1106485 24 100.0 41 ........................ CCAAAAATCGAATTCAAGGACCAAAACGTAAAACCACCTGG 1106550 24 100.0 38 ........................ TATGATGTTCTCATTGTATTTGTTGAGATCATGTTTAA 1106612 24 100.0 40 ........................ GACACGGCTTTGTAAACAGAGAACCCAGGCAGAACAGATA 1106676 24 100.0 40 ........................ ATACCGGTGTCCATACAGCCAATACCCCCAACACCGCCAC 1106740 24 100.0 42 ........................ TAATTATATAAGCCGAATTGATGTAAATAAGACAAGATGACT 1106806 24 100.0 39 ........................ CTTGTTTTTGTTCTTTTTCTTTGTAATCTTCTATTCTTA 1106869 24 100.0 39 ........................ TCATGAATCAGTTTGAAAGAAGAGAAGATTGGTTAAATG 1106932 24 100.0 39 ........................ GGTTTTGTCTCTTTTTCTGGCTTTCCCGCCAGAATCTTT 1106995 24 100.0 41 ........................ ATTTCGCAATTCATTTCGAATTGTTTCAATTCACTTCAAAT 1107060 24 100.0 41 ........................ CTTTCTTCTTCTATTCCTTATCTTTTCCTTCTTTTCACTAT 1107125 24 100.0 41 ........................ CTTATTTCAGAGGATCTAATAGACGAAGGCGGAATCTTTCT 1107190 24 100.0 41 ........................ CTGGCATTACCCAGGCTTGGCGACACACCAGAAGACAGACT 1107255 24 100.0 41 ........................ GTTTTTGTTGTTTCGAAGAGAATTGGCGGGGCGCTGTAATT 1107320 24 100.0 39 ........................ GTGGGAACAGCGGTGCTATTCATGACCCCTCGCCCAGGT 1107383 24 100.0 44 ........................ AGACTTTATTTCCAGATTTTTCTATATTTATCATTCCGTTTGAT 1107451 24 100.0 40 ........................ GAGCACTCTGGGGGATACCCCCCCGACCCCCTACTGCTAA 1107515 24 100.0 40 ........................ TGAGACCGGGACACCGCCGAAATTAAATCCGGCAACGCCA 1107579 24 100.0 40 ........................ TCTTCTTTGTCCATCTGTATATCCCAATCACGCCATCTGT 1107643 24 100.0 41 ........................ ACTACATATGACGCCGTGGATTGCAGATCTGCTATATTCTT 1107708 24 100.0 40 ........................ TCCTCTATCACGTCATCTATAGCCACACACTTTTGAGCGT 1107772 24 100.0 39 ........................ ATGGATAAAGACGAATTGAAAGAAATTATTAAGAATTTA 1107835 24 100.0 43 ........................ TACTTTTAATCCAGCTTGTCAATGGATGCAGAATTAGAGAGGC 1107902 24 100.0 39 ........................ CGTGGGGCTCGCTCTAACTTGTAACGACACATGTTCCTA 1107965 24 100.0 44 ........................ CCTGAGCTAAGGAGTGTCTTAATCTTATCGAAGTCGTCTGGCTT 1108033 24 100.0 43 ........................ CTTCGCCGTATAACGATCCTACAACAATAATCACTGATTTTGA 1108100 24 100.0 39 ........................ GTAATGAAAGTAATGTCTTTTCTCATACGAAAAGACCAA 1108163 24 100.0 41 ........................ AGATGATGCACTGGCAGAGGCGACAAGAGAAAAACCAGGCT 1108228 24 100.0 39 ........................ CAATGAATTCAGAAAACAGCTGTTCATCCTGGTTCTCAG 1108291 24 100.0 38 ........................ ACAAGGACGTTTTCGTGATCCAGGTGAGCGAATACACA 1108353 24 100.0 38 ........................ AGCAATAATTTAATTGCACTATTTTTAACTGTGCATGA 1108415 24 100.0 39 ........................ TTCACTGTCTACACATAAGTATAAGGGGCTTCGCCCCTT 1108478 24 100.0 41 ........................ CATAATTCGTTTCTGTATTTGGCGTCAAATTTATTTTTAAT 1108543 24 100.0 44 ........................ ATTTGAAATAAGACAAATCAGTGCAGAAGAGGCAAGGAAACTAG 1108611 24 100.0 42 ........................ AGATACCATTTTTTCTCTTGTTTAAACGTATCTACGAACCAG 1108677 24 100.0 41 ........................ ACCCCGCCAATCAGTGCGTTGATGTTCGCTGGCTTCATATC 1108742 24 100.0 42 ........................ TATATATTATATTATGAATTATACCACACACTTCTTTTTCGC 1108808 24 100.0 41 ........................ AGAAACGAATTGTTAGTTTACTTATCACGCCTTCATTCCCA 1108873 24 100.0 41 ........................ ATATCCACCCTTCTCACCAAAAGAATAATACAAAAATTTAA 1108938 24 100.0 43 ........................ TTGTCAACAGTTTCCGATAAGTCGTGAAGTTCATGTCATTTAA 1109005 24 100.0 51 ........................ ATTCTAGCTCGAATTCTGTATCTGAAATTTTACTTACTTTTTTGAACGACA 1109080 24 100.0 40 ........................ ATTATTACTACTATATCATCCGGATTCATTTTCTATCCCG 1109144 24 100.0 35 ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 1109203 24 100.0 41 ........................ TATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG 1109268 24 100.0 40 ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 1109332 24 100.0 39 ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 1109395 24 100.0 43 ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 1109462 24 100.0 40 ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 1109526 24 100.0 39 ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 1109589 24 100.0 41 ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 1109654 24 100.0 39 ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 1109717 24 100.0 40 ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 1109781 24 100.0 41 ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 1109846 24 100.0 39 ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 1109909 24 100.0 40 ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 1109973 24 100.0 41 ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 1110038 24 100.0 40 ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 1110102 24 100.0 39 ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 1110165 24 100.0 39 ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 1110228 24 100.0 43 ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 1110295 24 100.0 39 ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 1110358 24 100.0 43 ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 1110425 24 100.0 35 ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 1110484 24 100.0 38 ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 1110546 24 100.0 42 ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 1110612 24 100.0 38 ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 1110674 24 100.0 40 ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 1110738 24 100.0 39 ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 1110801 24 100.0 41 ........................ TATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA 1110866 24 100.0 40 ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 1110930 24 100.0 37 ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 1110991 24 100.0 38 ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 1111053 24 100.0 39 ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 1111116 24 100.0 39 ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 1111179 24 100.0 37 ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 1111240 24 100.0 40 ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 1111304 24 100.0 38 ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 1111366 24 100.0 40 ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 1111430 24 100.0 38 ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 1111492 24 100.0 41 ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 1111557 24 100.0 40 ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 1111621 24 100.0 41 ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 1111686 24 100.0 43 ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 1111753 24 100.0 41 ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 1111818 24 100.0 43 ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 1111885 24 100.0 40 ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 1111949 24 100.0 39 ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 1112012 24 100.0 39 ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 1112075 24 100.0 39 ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 1112138 24 100.0 40 ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 1112202 24 100.0 41 ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 1112267 24 95.8 38 .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 1112329 24 100.0 43 ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 1112396 24 100.0 37 ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 1112457 24 100.0 40 ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 1112521 24 95.8 43 ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 1112588 24 100.0 39 ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 1112651 24 100.0 41 ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 1112716 24 95.8 39 .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 1112779 24 100.0 39 ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 1112842 24 95.8 41 .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 1112907 24 95.8 42 .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 1112973 24 95.8 42 .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 1113039 24 95.8 39 .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 1113102 24 95.8 37 .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 1113163 24 95.8 42 .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 1113229 24 95.8 40 .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 1113293 24 95.8 41 .............G.......... TATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC 1113358 24 100.0 40 ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 1113422 24 100.0 39 ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 1113485 24 100.0 42 ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 1113551 24 100.0 38 ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 1113613 24 100.0 37 ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 1113674 24 100.0 39 ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 1113737 24 100.0 40 ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 1113801 24 100.0 39 ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 1113864 24 100.0 40 ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 1113928 24 100.0 39 ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 1113991 24 100.0 37 ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 1114052 24 100.0 40 ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 1114116 24 100.0 40 ........................ GATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA 1114180 24 95.8 40 .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 1114244 24 95.8 39 .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 1114307 24 95.8 42 .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 1114373 24 95.8 39 .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 1114436 24 95.8 41 .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 1114501 24 95.8 43 .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 1114568 24 95.8 39 .............G.......... TATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA 1114631 24 95.8 0 .............G.......... | ========== ====== ====== ====== ======================== =================================================== ================== 162 24 99.5 40 GTTAATCTTCTATAGAGTTGAAAG # Left flank : CGTCGTATTCCCCGTGAACTCCAACTAATGCATCGCCTCTACACAATTCTTCTACCCACTCCGGGGGAAACTTTGTCGTGAACTCCAACTAATGCATCGCTGCTACTTGACAATATGCTCGTGAGGTTCAAGATGATCATTAAGGCAGTGAACAGGAACCTCGAAATAAGAATTGCTCAGTAAAACTCGTTCTGTAGGACGCGGTTCACTCCTGGAATTTGTAACTTTATAACCACACTATTAAACGCAGCTAATTAATTGTGTAACTAAAAATTTATCTGAAAATCTTTTCCTGGGAGCCATCATGAAAATGCGTCGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAAATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTGTAAGAAATAAGATCATGTTAATCTAGCGGTATAAAGAGTGTCA # Right flank : GTCCTAGTATAGTACTTGAAACTAGGTGACCCTTAGATCGCTTAGTCTTATGTGGAGCTGATGCGTAATGATTGATTACGTAACGCTCTCCCTACGAATATTTCTAATTGACAAACTACACCATTTTTAAGTTCTTCACACTAATGGGACTGAAATCTCATAGACCCTATGCCTGACCTTCCCTAACATGACCTTGATCAATCTTGGAAGAGACTGAAAGAACCCCTTTAAGGGCCTAGGTTCACTCCTCTGTTCCTTTAGAATTGAGAAATACAGTACCACCTTTACCAAGTCTAGCAGATCTCGATTTCATGACTCTAAACTTGATTGGGAAAAAGTTAAGGATGGGGAAAATTTGCTGCTAGCACCTGATTTTCTCTCTATGGTCCAGTGTTGCCCTAGGTTAATGGGGGGTAAATGTGTCCTAGAGTTTTCCTCACGCAGTACGGTGTGAAATTCATGTACAGCAACCAGTCAATTACTGATCCTTAAGGGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 1136590-1136076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008822.1 Metallosphaera sedula strain CuR1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 1136589 28 92.9 39 .............AT............. TGCCTCCAGAGGTGGGAAGCGTACGCAGAATAGCCCTTC 1136522 28 100.0 37 ............................ AATAGTTGCCCTTCAGGAGACGCCACTAGTTGAATGC 1136457 28 100.0 42 ............................ AAGTACCTCAGAGTTCCGTTCGGTGACATGGCTATGATGTGT 1136387 28 100.0 40 ............................ TTGGTTTTTATGGTCTCAGCTACTCTTAGTGTGTAGAGGT 1136319 28 100.0 39 ............................ ACGTGCAATCAAGTATTGGTTCAGTCGTAACAGGGGAGT 1136252 28 100.0 41 ............................ TCTTCAATTTCTCCGAAATCTTCATCACAATGGACCCCAGT 1136183 28 89.3 52 .......C......G............T GGGATCCCCGCTTCCCACACTCACGACCGGGGGGGGGGTGTAGACGTGTCGT 1136103 28 96.4 0 .......C.................... | ========== ====== ====== ====== ============================ ==================================================== ================== 8 28 97.3 42 TTGTAGAGATCCTTCGAGGGTTTGAAAC # Left flank : CCCTCGAGGAGTACGCTTCCGATCTGCTTCACCTCGAGGAGGAGCTCAAGGCAGATCAGTCAAAGGCCTGGGAGAGATATCTGGGAGGCCTGCTACTGTTCTCATGTCTCATAGACTCAGACAAGCATAGCGCCAGTGACACATCCTTTCTTCCCCAGAATCCCCCTTCACCCTCACTGATTACCGAGTTCATATCCTCGATCAAGAGTAACGATAGGATGGCTGGGATCAGGGAGAAGCTCAACTCCCTTGTCTCGTCTACTCCGGTTAGCCGGACGGTAACCTTGATTGCCCCGAGCGGATCGGGGAAGACGCTGTCCGGCGTTCTAACTGCACTCAAGATGGGGAAGTCGAGGTTGATCTATGCTCTTCCCTACATTAGTATTGTTGAGCAGGTTCACGACGTGCTCTCAAGGACGAGGATGGACCCGCTCAAGTTCTATCATCTATACTAGGGTAAGGTTTTTTAGGGCTGGCTATCAATAACAAATAAGAGCGGT # Right flank : ATGCTTTTAGTTAAACTAGAGAATGGGCTCAGGTGATGAATTACCTGGGCCGACCCATCAAGGGTAGCTTTAGAAGCTGAGCCTAGATCCCTATTTAACTCCTCTTCCTACCAAAATAAGCTTACTAGTTTTCCCTGTGCTCGGTTTTCCCAGTTATGTTCACTTCCTAGCGAACTAGTTTCTAGCATTCTTTAGAGATTAATAAAGCAAAGTTAAAACAATAATATCTCGAAGTCTATCAATAAGTCTGTAGTGATCCTCAAGGTTTAAAACCCTAGAGAGATTAATAGGATAACTAGTCATTGGAGAGCCTGGCATCAAGGCTTATTTTTTGGAAGTCTAAATAGGTGATGGGGCCCCCGGTCTAACTCTCTGCCAACAGCTGCCGGGCCCGGGAAAACTCTTGATTAGGCCCCCGCTTATACGGACCCTCCAGCGTTTTGAAACTATCACATTTTGTTATGCGTCCTTTGCTTCCTTGTCCGTAGATCCTCCCGAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGAGATCCTTCGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1137808-1139295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008822.1 Metallosphaera sedula strain CuR1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 1137808 28 96.4 39 ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 1137875 28 96.4 39 ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 1137942 28 92.9 39 ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 1138009 28 96.4 41 ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 1138078 28 100.0 41 ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 1138147 28 100.0 39 ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 1138214 28 100.0 39 ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 1138281 28 96.4 39 ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 1138348 28 100.0 40 ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 1138416 28 100.0 40 ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 1138484 28 100.0 43 ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 1138555 28 100.0 39 ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 1138622 28 100.0 41 ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 1138691 28 92.9 218 ......A....................T ACAACCCCCTATGTCAAGCACCGTGTCCATTTCAACCTTTAACCTCTTATTTTCCTGGAATAAACGGAACTAGGTGACTGAGCAAGAGAAAGGAATGATAATGCTTATTTTGGTAGAGACGAATTTCGTGAGGGGGCCTTAGACTGAGTCTCCTCAATGATGGGTCGGGACAGGGTCAAGTCATCACCGGACCCCCGCTTTTCAATTTTGACTCTCGT 1138937 28 78.6 38 ....G.A......C.A.A...C...... TGGGGTTTGGTCGAATTAGTCCCATATGGTAGTTTCAG 1139003 28 78.6 237 .....AA...G.C.........CA.... TCGGATCTTCTCCCTACATGACGTATTCCTGTGACCTTTTCAATCCACCTCACCTCCAATTTGCTGGAATATAGGGAACTAGGGGGACTGAGCATGAGATAGGAATGGTGTCAAACTTATTACGTAAAGGAGGTGATAAAGGGTGGAGGGCCTAAGCTCATAACAAGTCCGATATGGCTCCATGTGTCAGCCGTTCATCATAGGCCCTCTCTCTAATTCTGTCTCTTTCATTATTGT 1139268 28 82.1 0 ..A.G.A....A.....C.......... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 17 28 94.7 63 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Left flank : AGTTCTAGGGAAGATAGTGCCCTCTTGGCGACGTAATATGCGATGAGGGAAGATATCTCAGCGTGACTGGATCGCGGATCCTTACCTCCACGAAGATGTTTCTGAAAGAAGGTCGTGTACTTACCAACGTCGTGGTATGCCCCAGCAATATAGGCTGGGTCGGAGAGCTCCGGACGACTCCCTGAGATGAGCGAAGATGCAGTGGTTCCTACCTCATTAAGGTGGTCCGCGAGGCGCTTGTTGGGATGAGAACATAGATCGTCCGGTGAACATTCCATGGGAAGAGTTAGGGTTAAGGTTAAAAAAGATTATTTTATAGCAGTAATAATTTTCCTATTGAAAAATCGGCAGTGAAAGGGAAGAAGAAAATATATAGAGATAACAATATTATTTTGTACGTGGGTTCACCTCGGCGGTGAAAGGGAAGTTGAGGGTGGTTGATCACTGCCGAATTTGGGGTAAGGTTTTTTAGGGCTGGTTACTAGTAGTAATAATAGCGT # Right flank : CTCGGATCTTGTCTCCATGTGGCATAGGCCAATTACCATTTTAATCTTCAACCCCTCATTTTACTAAGGAAATGGAACTAGAGGGTTGAGCTGAAGAAAGGAGTAGCGTCAAACTCATTGCGTTAAGGAAAGATGAGAAACAGCCCCAGTTCGTAACAAGTTAGTCATGGATCCGTGCCTCGGTGTCCATCACTCTCAGTCTGTCTCTAAAGATCTTGAGGCCTGAAACTAGGACGAATTCCCGAACATTATGTAGGCTATTTGTATTAACTCTCTTCACTCTTCATATGAAGTAACCTTTACCTGGCCTTCAGGTGGAGACTCAAGATTCCGACATATCCCCTCAACAATACCCCTAGTGTAGTCGGCATCTAAGCCTCTGACTTAACCCAGGTAAGAACGGCCACTCTCTCAACTTTGAGACAGTCACAAAAAGGTTTATTTTGTTGCGGGTACCAGCAATTTGCGGGTACCAGCAAATGTTCGTGTACGGAGTTCCC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-2.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGTGATCCTTTGAGGGTTTGAAAC # Alternate repeat : TTGTAGAGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //