Array 1 16596-17555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPE010000005.1 Streptococcus oralis strain SK141 Soralis_SK141_DanaHsu_Sia_NO_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16596 36 100.0 30 .................................... ACGACATTCAAATAGTTGCTCATTTCTATA 16662 36 100.0 30 .................................... GTGTGTTTACGTCCGATTAGTTTACTTTCT 16728 36 100.0 30 .................................... AAGGTTTATGAATTTATAAAGAATAATCCA 16794 36 100.0 30 .................................... ACTAAAAGGCTTGCATTGCCACTTTGTTAT 16860 36 100.0 30 .................................... CAGAATCAATCTTCTTCAAGGCTTCACGCT 16926 36 100.0 30 .................................... AGATGATCTTTGATTCTGGTGAGGACTTTG 16992 36 100.0 30 .................................... ATTGATGATTTACAATTAGCAATCGATGGT 17058 36 100.0 30 .................................... TTCAAGTCAAGCAAGTGACAGGTGATAGGA 17124 36 100.0 30 .................................... GGACGAGGAGGAGGACAAAGAGAGAGCAAA 17190 36 100.0 30 .................................... ATAAGTTATTTCTTCAACTCGAAAAAGGCG 17256 36 100.0 30 .................................... AACGGTCATCAAATCGGAATCAGTCGGGCG 17322 36 100.0 30 .................................... TTTTGTTGACGTATGTCAACACAAAACACA 17388 36 100.0 30 .................................... TTTACCTCACTTTTTTGCTAAAATGGGTAT 17454 36 100.0 30 .................................... AAATGGACGTTCAAACCAACCCACACCTCG 17520 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGACGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCTTACACATAGGTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGGAAAACAACTGCTAGAGAAGCACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTGATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150733-150963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPE010000001.1 Streptococcus oralis strain SK141 Soralis_SK141_DanaHsu_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 150733 36 94.4 29 ..............C.G................... CAGCGTGCCGAGAAAGAGAAATTTAACCA 150798 36 100.0 29 .................................... TGATGATAGACTTAGCTGAAATCAAGAAA 150863 36 100.0 29 .................................... CTACTCTTGACAACTTCGACACACCGACT 150928 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 4 36 98.6 29 GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : CACCTTAACGAACACATCAAACAACATAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTTGGACTTCGTCGTTAATCTGCTTTATTTTCTACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGCCTCGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATTATGATGCTAAGAGCTCCAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTATTGA # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //