Array 1 1-967 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBZ01000012.1 Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1 24 100.0 41 ........................ TACATAGCCAATGATGGGACGACCAGGTACTATATCGAGTT 66 24 100.0 44 ........................ CCTTTATATCGTTCATCAACTCTGCTATAATTATGTGCTGTCTC 134 24 100.0 38 ........................ GTCTCTCTCCGCTTGGAGGCTGGAGGCCCACCTGTCCC 196 24 100.0 39 ........................ TCTTCCTGGGCCTCGCTGTCTCGGCGTAAACGCTCTCAA 259 24 100.0 39 ........................ TTGGCTTTAAGTTGTTTCTCTTTATATACTTAACTAAAA 322 24 100.0 43 ........................ TATTTACGTAGACGTCTAATCGTCTGAGCCGGAGAACCAATCC 389 24 100.0 40 ........................ AGCGACACACTACCTAGACAGGCTAGTGCTGGCCAGACGC 453 24 100.0 42 ........................ GCGTGAGATAAGGGCCCTAGCCCTGCTTAAGGCAAAGGGCCC 519 24 100.0 38 ........................ GCGACATTGGTAAGACCAGCCCCAGACTTGCCCGAGAG 581 24 100.0 38 ........................ ATTCTTAGTGGGGGTGATCTCGACCCCCGCCCGCCTCA 643 24 100.0 39 ........................ CGGTCCAGCTCGAAGCAATAGATGAATACGGCAACGTGG 706 24 100.0 43 ........................ GCAGGGGCGAGAAGCAGCTGCGCAGGCAGGTTAGGGAGCTTGA 773 24 100.0 44 ........................ TAGGTTTTGACTGTTTTGGGGGCTGGGACTTGGGGGTTGAAGAG 841 24 95.8 38 .....................A.. CAGCCTGGCGAGCCTGTCGATACTCGGCTACGCCTACA 903 24 91.7 17 .........A...........A.. CTCTACAGTATGGAATC Deletion [944] 944 23 83.3 0 ......AT.A...........-.. | T [960] ========== ====== ====== ====== ======================== ============================================ ================== 16 24 98.2 39 GAATCTTCGCGATAGAATTGCGAG # Left flank : | # Right flank : GGAATATGCCCAGGTTGCCTAACTCTGATTAGGTTTAGCTTGATGGAATCTCGGAGATGGGTGTTGCAGGACAGGATACAGGCCTAGGGGATATAGTTAAAAACTGGGTGTTAGTTTTCCGAGATTGCAGAGAGTCCAGGTGTTCGTTAATTTGCAAGCTATAAGTGTGGGTTTGCGTTGGGGCATAGTTTTCTGTAAAAGCAGTACATGCATTTTTGTGGTGGCTGTCTTGTGAGGGGTGGTTCCTCTTCTTCGACTATTTTTAGGGTTTTCTTTACTAGCTTTTCAGCTGTCTGTAGGTGTCTCTGGTTTATCTCTAGCGTTCTCGTTGTGCCCCCTATGTAGAGTGTTGCTCTGTACACGGGACCTAGGGTTTTCGTCGCTAGCAGAGCGTAGGCTAGAAGCTGTGCCTGGAAGTGTTTAGAGGCCCTGGGCCTTCTCGGGTGCTTCTTAGCCTCCATTATCCAGTAGCCCCTCCTGCCGTGGGGGCCTGCTACAAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGCGATAGAATTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 35416-35264 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBZ01000018.1 Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 35415 25 100.0 37 ......................... GTAGGCCCTCCGGGTTTGCAATAGCACCCTTGTCCTT 35353 25 100.0 40 ......................... CTGCATTTCGTTGTCGCCGCGATGGCGGGGCTACTGGTCG 35288 25 96.0 0 .......................G. | ========== ====== ====== ====== ========================= ======================================== ================== 3 25 98.7 39 TGAATCTTCGAGATAGAATTGCAAG # Left flank : AGATAGAATTGCAAGCACGTCTGCAGCCAGCCCCAATCCCCGACATAACGGTTT # Right flank : AGTGTCGAAGGTTTATATAGGGAGGGCTGGAGGAGCCTGTGCGAGGTTAGCCTGAGCCTGTAGAGCCGTGGAGCCTTGCGATCTCGTCCATAGGAGGCTCCCTAAACGTCTTGACCCCGTTGCTCGTGACCAGCCTTAGAGCCGGCTCTCCTGACCTGCCGGACACTCTGCCTATGAACGAGTACTCCACTCCCATCTCCTCGAGGACACGACTCGCCTCGCCAGCCTTCTCTGGAGGCACTGTGGCGAGGAGGGTGCCGCTGCTTATAAGCCGTAAGGGGTCTATGCCTAGGGTGCTAGCCACTATCCTAGTCGCCTCTCCTAGTATTATCTTGTCCTCCTCAACCTCGATAACAGTCCTGGAGGCCAGGGCCATCTCCACGAGGCCTCCTATAACACCTCCCTCGGTGGGGTCGTGCATGGCGCTGACAACACCCGCCTCGGCAAGCTCTATAGCCTCTTCAACTATACTTACCCTAGAAGCAAGCAGCCTAGCCCCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAATCTTCGAGATAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2687-3725 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBZ01000026.1 Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 2687 24 100.0 39 ........................ GAGCCGGGGGCGGTGAAATATGCGGCGTGTAGCTTGGCC 2750 24 100.0 41 ........................ TCGATATAACACTCGATCTAGCCGCCGTCGAACCAACAGCC 2815 24 100.0 46 ........................ TTATCAGCGGCGGAGGGCGCGGCGGATGCTATAACAGATATGCTAG 2885 24 100.0 43 ........................ AAGCACACTTTGAGCTCGCTCGCGAGCGGCGAAAGTCTGTCAA 2952 24 100.0 48 ........................ CTACTTTGAGCAAATCTACAAGAGGTTGAGGGCATGGATTAGCTTCGG 3024 24 100.0 46 ........................ ATCAAGATTATACTAGCTGGAGTGGAGGGTGAGCATGCAGAGTTCC 3094 24 100.0 44 ........................ TGTTTCATGGGGTAAACGTAAATTTGCTAAACACACTATGCTAT 3162 24 100.0 49 ........................ TGTAGAGCTCAGAGAGAGGCTTCTCACCATCCTCGACAGCCTTCCTAAC 3235 24 100.0 41 ........................ TTTATTATATTAAATACTGTAGTTAGATCTAGCATGTTACC 3300 24 100.0 45 ........................ ACACTGTTAAAGAGGAAATGAAGTCGGGGAGTTATCGAACTACAT 3369 24 100.0 40 ........................ CATGGCCTGGGCTTGACGCCTGAACCTGGCTGTCCAGCTA 3433 24 100.0 43 ........................ GGCTAGCCCAGCGCCTGGAAGCACCCTTCATAAACAAGTGCAG 3500 24 100.0 44 ........................ ATGCGGCTGACAGCTTCCACGTACTTTAGTGCTACTGTATCTGT 3568 24 100.0 44 ........................ GTCGTTAAAGTAGCCATTGGTTGGGTCTAGTGCCTGTGCTATCC 3636 24 100.0 42 ........................ ACTGTATATCCGCTGAATCTTTGCTCCACACCTGGGGCAGGG 3702 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 16 24 100.0 44 GAATCTTCGAGATAGAATTGCAAG # Left flank : TGCTGAGAAGCTACAGAGCAGCCGCCGACTCCCTAGAAGCCGCGGACAAACACAGAGATAAAACTAGACACCACACTGGGAGACAATACCCATAGACGTTAAACACTAAATTAACCATTAAAACAAAATTTAACAAATCCCCACTTTCGTAGGGCTGTATATACGTTTAGATTGGGGTTATGTTTATTAGGTTTGGTTGGACCCCCCTTCTTGTTTGTATATATTTTGTGTGTGGTTGTTTTTGTATCTCAATGTTTTCCCCTCCGGCGGGGGGAGTATATACTTTTATCTCGTTGGTAAGGGTTATTAGGCTCCGTGTGGACCCCCCATATGGCGAGGCCCCCGGGCTAGGGCTGGGGGCCGTGCAATAACCCCCCGGGGCCGGGGGTTTATCTATGTGATAGAGTTGACTAGCCTCCCGCCCCCCGGGATGGCAGGGTGGAAAATAGAATATAGTATCGACTGTAGACACTACAACGCACACCAACAAACCATGTGCA # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGAGATAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 768-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBZ01000038.1 Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 767 24 100.0 38 ........................ ATCATCACGGGCCCTCGGAGGGCCTCGGGGCGGCCCAG 705 24 100.0 38 ........................ ATCATACGCCGCCGAGACTATCGACAGGGAAAAGGCTG 643 24 100.0 39 ........................ GCGGCTTTATATAGCCGCCGAGCGCCTCCATCGCCGCGA 580 24 100.0 38 ........................ CTTATATTCTGGAGCGGCCTCAAAAACGGGACAGTCGA 518 24 100.0 42 ........................ CTAAGGAAAGGTGGTACTTCTCGTGTTACATTACTCAATCTA 452 24 100.0 40 ........................ GATAATACTCGCGGGTGGTGATTGCTGTGGCTAAGAGGAG 388 24 100.0 45 ........................ TTGCAAGCCCCAACAGCTTCAATAATATCTTGTCTGGTATTGGTT 319 24 100.0 40 ........................ TTGACGTCTATGCTCGACTTATAGCCCAAGCCCACTGCAA 255 24 100.0 43 ........................ AAGCTAGGAGGTGGAAAGGATGGACACGCTTTTTAGAGCCGCA 188 24 100.0 37 ........................ TCTTCCCTACTAAGTATCCTGCCTCTGTCTTAATGAT 127 24 100.0 39 ........................ GTAGCCATACCAGCCTTCGAGGAACCCCTTGGCCGCCTG 64 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================= ================== 12 24 100.0 40 GAATCTTCGCGATAGAATTGCGAG # Left flank : CGATAGAATTGCGAGCTTACTTAACGTATTCGGCCCGTGTTTAACCGATTCGGTGTCCGGCGAATCG # Right flank : GGTGTAGGAGGCGCCTCTAACTGTCGCTACGTAAGCCATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTTCGCGATAGAATTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 29830-32167 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBZ01000009.1 Aeropyrum camini SY1 = JCM 12091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================================================================================================= ================== 29830 25 100.0 43 ......................... TTCAGGGATAGGCTTGGCAAGAAGCTTTTCCTAGTGCAACAGC 29898 25 100.0 40 ......................... AATGAGAAGATGAGTTGGGCACATGCCAAAGACGCCTACG 29963 25 100.0 39 ......................... CTAGCCAGGGTGGCCAGGGAAACGCTTGAGGAGAAGGTT 30027 25 100.0 42 ......................... ATAGCCCCGATGAACCGGGGTAAAACCTCCTGGATGGAGGCC 30094 25 100.0 40 ......................... AACACTCTTTTCCTTAATAATGAATTCTTGATCTTGGCCC 30159 25 100.0 39 ......................... CAGTCTAAGGGTGGGTACACCTGTGTACAGAACGAGAGG 30223 25 100.0 37 ......................... CTAACTCTCTTTCCAGCCGTCGGTTCAGGCGGATCTT 30285 25 84.0 37 .ACA..A.................. CTAACTCTCTATTACTGATAAGAAACGGTAAGACGCT 30347 25 100.0 43 ......................... TTAAACTCTCAAGCCTGTTATATTTATCAGCAATACTAGCTGA 30415 25 100.0 39 ......................... TACGTGAGGCAGTATCTGGATGGTGACTGGGGGTGGCTG 30479 25 100.0 39 ......................... CTCAGCCTCCCCAGCAGCTCCATCGCCACATGCCTCGCC 30543 25 100.0 40 ......................... TACGCCATGAGCCCGAGGTACAGCGAGCTGGTGGGCAGGC 30608 25 100.0 41 ......................... CGCCTTGTCGTCGGGGAACCCCATGTACTTCAGCTCCGCGT 30674 25 100.0 43 ......................... CCTCCCAGCCCGGACTTTACAGAGTCTTCTATAAACTTCTCGA 30742 25 100.0 44 ......................... TTACGTTTATTTTGTTGCACCCACGGGCCTCGACTGATACGTAG 30811 25 100.0 39 ......................... AGGAACCTGGCTACCAGGCTTGCTAGTCTCCTGGCGTCC 30875 25 100.0 42 ......................... TGCTTCGAGGCTGGGAAGATGGCGTGCTAGGTGAGTTAGCAC 30942 25 100.0 43 ......................... AGCCCCCTGGCTCCATGGAAGCGTATAGCAAGAATAGTACCGG 31010 25 100.0 38 ......................... AGCCCCTACCTCGCCGCGGGCGAACCCGACCCCAGATG 31073 25 100.0 40 ......................... ATGGTGATGTAGGCCTCCAGGACGGCCATACTGTGTAGTG 31138 25 100.0 44 ......................... AGGCAGGCGGGGGCTGAGGGTGTGGGTGAGAGGATAGGCAGGGC 31207 25 100.0 39 ......................... GCAACCTCGTCAGGCTTCCACACGTTGCTAGCCACGGCC 31271 25 100.0 36 ......................... TCGCAACCTCCTATCTGGCCGTTGTCACCGTTGCGG 31332 25 100.0 44 ......................... GGCAAATACTGTGTAAGGTCTACGGATGCCGTCTGCGCGGTTGT 31401 25 100.0 41 ......................... CTGCATGAGCCCGTGTGTGCTGCTGGGCGGTATGCCCAGCG 31467 25 100.0 42 ......................... GGCCTGGGACCGCGGCTCTCGCCTGGCTAGCCCTCTACAGGA 31534 25 100.0 41 ......................... GCTATAGTAGCGTAGGTGCCAGAGTTGTTGAGATCATATTG 31600 25 100.0 40 ......................... ATGATACTCGAGGAGTATGGGGGGTGATGGGTTGTGGAGC 31665 25 100.0 44 ......................... TTCATAACAGCGTTTAGCCAGGTCACTCACACCTATCCACCCCA 31734 25 100.0 39 ......................... ATGCCACAGCTCAGCCTCTATCTCACTGCTAGCCAAGCT 31798 25 100.0 38 ......................... GGCGGGCGTGGACTACAGGCTCCAGCCGTACCTGCCAA 31861 25 100.0 41 ......................... AGGCGGTGGTAGCGGGGGCTCGGGCGGCAGCGGCGGTGGCT 31927 25 100.0 41 ......................... CAGGTTGCGTTGACCGGTCTTCACGAGTTCACCCACTATCT 31993 25 92.0 125 ..G....................G. TTTGGACATTTCGTCTATAGGTCTCTTTTACATAAGCATCGTTGAAGATGCTGGGATAAGTTTGAACTATAGGGCAGGCATACCTGGCATGTAGAGGTGGAGCATATCTTAAAGCAGCGTCCTCC 32143 25 72.0 0 ..T...T.GG....A...A...T.. | ========== ====== ====== ====== ========================= ============================================================================================================================= ================== 35 25 98.5 43 GCATATCCCTAAAGGGAATAGAAAG # Left flank : ATCGCTGAGTGTAGGCCTAGCCGCGTACCTAGGACCTACGACATCCCATTTCCATCCCCTTAACTCGGCGTATACTCCATCGCCAGCAGAGGATCTTATCAAGTCCCACAAGCCTCGGGGGAACAAACACAACACCACTAAGTTATTAAACAAGCGGTACATCTATTTATCAGAACAATGTATCTATTGTTACATAAGATGTGAAAAGTGACACATTAACCATTTATAAGCTAAAATACGAATAGCAAGACCTTGATAATAAACTCAAAACTATCAATCTAAACAGATAGAAAATGTACCCATCTAAAATAGTCCATCAAAAATAAGGACACGCATAATAACGTTTAATGCGAGCAAACTACAAATAAATATAAATGACCGGAAGCCTCTCTGAAGAAGAACAAAGCCAAATTGTGGGTGAAATATTCTGAATTATGAGAAAAGAAAAGCTTATATAAGAATACAACACTAAATAAACTGAACAATGAAAAGATTAAACG # Right flank : GAGCAAAAGTCAGTAGATGATAATGACATATATCGTTATGCCAATGTTAGTGTCGAGCGGGAAAAGAGTTCCAATGTGCCCAGTAACTTGGAGGTCATGTTACACTATCGCCGTTAAAATCATAATTCATGAAGGCCGTCTCTCTGAACCTTTCAATCGCTAGATATTAGATAGTTCCGAACAGCGTTTTCCCAAGATATAGCAGATTAATTAGTTTTATCCAGCGTTAACCTGTTCCTGGATATACTTGGTTTTGTTTGAAGACAGTCTTCATCTATCCTGCTGGGGGTGCATGGAGGTTTATTTACTCGATATACATGCCGAGGAGCCACATATGCCATAATTATGTAGTTAGTATATTAATTTCCTCACGGGGTTAAAGAGGTGTTTTGGTTTATCGTTTTATTGCTATTACGGCGATTGCAAGTAGCAATATTGCTATTGCTGCGAGTATTTCTAGGGGGATGCCTTGTATGTATTGTCTTATCCCGTCTCCCTCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATATCCCTAAAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //