Array 1 4877-5925 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYW01000185.1 Xanthomonas fragariae strain ICMP 6278 isolate ICMP 6278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4877 28 100.0 32 ............................ TTCGCGGGCTAACGTCGGCATAGCAGCAATGA 4937 28 100.0 32 ............................ AAGGCGTCACGCCCGGAACGCTGATGCCGTTG 4997 28 100.0 32 ............................ ACGATGCTGCCGCTGGTGCCGAACACGTAGGC 5057 28 100.0 32 ............................ AGGAAGATCGCCAGGAGGACCAGGACGGTGAC 5117 28 100.0 32 ............................ GTCCTCATCTACACCACGCATCCCTACATCGT 5177 28 100.0 32 ............................ ATGAGCGGCACCGCTCAGATAGGCAATAACAC 5237 28 100.0 32 ............................ GTTGCCGGGTTGCCCGGTGTATAGCTCGATTG 5297 28 100.0 32 ............................ ATCACGGTCAGTACGGCACCGCCGATCGCTGC 5357 28 100.0 32 ............................ ACAAAGCGCGATGCACCGCGCTGGGAATCTCC 5417 28 100.0 32 ............................ AATCACGGTGTGGTAGGTGTCGATGTGGGAAA 5477 28 100.0 33 ............................ ATGGTCATTGCGATCAACCTGTTTACGTTCTTC 5538 28 100.0 32 ............................ GAAGACGGCAGTGTCATGCAGTTGCAGCAGAT 5598 28 100.0 32 ............................ CTTGTATTGGGCTGTGTCTACTTGAATTGAAG 5658 28 100.0 32 ............................ AGTACCAGGGCAACGTCCAGTGCGCATGCAAT 5718 28 100.0 32 ............................ GCTAGCGCACTGACCATCACCAGGGAGACAGG 5778 28 100.0 32 ............................ ACCACAATGTTAGAGGTATCGATCCACTGCAC 5838 28 100.0 32 ............................ ATTGCGTCATGATCACAGCATCGCCGCCATTC 5898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //