Array 1 27278-25927 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLH01000016.1 Staphylococcus pseudintermedius strain GL002B NODE_16_length_49052_cov_34.222749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27277 36 100.0 30 .................................... GATTTTGATTCGACACCTTAATCATATAAC 27211 36 100.0 29 .................................... CGAAACAAGGTAAACCGCCTAAAACGGTG 27146 36 100.0 30 .................................... ACAAGAAAGCACAGATTATCAACTTATTGC 27080 36 100.0 31 .................................... AGAAACTTCACGTGTACCCTCTAAACCTTGT 27013 36 100.0 30 .................................... ATGAATCGTTCCTGCTCCCATAACCGACAA 26947 36 100.0 30 .................................... CATGTTTTTAGCTTGCCCTTGAATACCTGT 26881 36 100.0 30 .................................... ATTCTTCGTGAGGAATCAATACTACGTTTC 26815 36 100.0 29 .................................... GATAAGAAAGATAATGTGTACATGACTCA 26750 36 100.0 30 .................................... AGGTAATCCGGAAGAAAAGCCTGGTATTGT 26684 36 100.0 30 .................................... AAATTATCACAGGTGACTGGTCTGGGGCGT 26618 36 97.2 29 ............................A....... AAATACAGTTGATTGTGTCTGAGGATAAC 26553 36 97.2 29 ............................A....... GCTTTTTCAACTGATGCGACTGGTTTCGT 26488 36 97.2 30 ............................A....... AATAATCATGTCACGCGCATTAGTTGGTCG 26422 36 97.2 30 ............................A....... TGTGCTTTTAACAAGCCTACGTGATCTTGC 26356 36 97.2 30 ............................A....... AGCTGACGTAGACGCTTTTTCGTCAATGCC 26290 36 100.0 29 .................................... AGTTGCAGATATTGCTGATATTACGGAGA 26225 36 97.2 30 ............................A....... TATTTCTAGCGTCGGTGTTGCTGTTATTAC 26159 36 97.2 29 ............................A....... GAATTAGAGCGTATTAAAGATGAAGTGAC 26094 36 97.2 30 ............................A....... ATAGCTTCCTGCAAGGTGGCCAGCTTGTAT 26028 36 94.4 29 ...................C........A....... AAGTTTGAAGTGAATCAAAATGACCGAAT 25963 35 88.9 0 ..........................-.CA.C.... | CT [25930] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 98.1 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGTCTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTTTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGATTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //