Array 1 580657-580198 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607753.1 Micromonospora coxensis strain DSM 45161 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 580656 30 96.7 31 T............................. AACCTCCCCATGATGTGAGCCTGCCCGAGCG 580595 30 100.0 31 .............................. AACTCGTACTGGCTGACCGACGGGTACGGCA 580534 30 96.7 31 G............................. TCGGTGCGCGCCTACTGGCAGGCCCACCTCG 580473 30 100.0 31 .............................. GCGTCCGGGACCTCAACCGGGAGCTGACCGA 580412 30 100.0 31 .............................. TCGAAGCCGGCGGCCGACGCCGTGGTGGCGC 580351 30 100.0 31 .............................. CCCACCGGGACCCATCGAGACCCACCGACAC 580290 30 96.7 33 ................T............. GAGGCGCTGCCCGGGTACGCCACCGGTTGGCCA 580227 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================= ================== 8 30 98.8 31 CGTCCTCCCCACGCACGTGGGGGTGCTCCG # Left flank : TCACCGACATCCAGCGCTTGCTCGACCCCGACAGCACACCCAAACAGCGGCAGCCCGCAACCGAGATCACCTCCCTTTGGGACCCGGCGATGGGCGCCATGCCGTCCGGTGTCAACTACGGCACAGACTCCTGGGACTGACATGGCCTCCATGGTCGTCCTCGCCACCACTGCCGTACCCGACCACCTGCGAGGCGCACTCAGCCGCTGGATGATCGAAGTCACCCCCGGCATGTTCGTCGGCACCCTCTCGGCCAAGGTCCGCGACGAACTGTGGAACGCCGCGAGCGCGGTCGTCGGTGACGGTGCGGCCGTCCTCATCCACCCAGACGACACCGAGCAAGGCTTCTCTCTACGGACCGCAGGGGAACGCAGACGCCGCCCGATCGACTTCGACGGCCTCACCTTGGTGGCACTGAGCCCCATGGAGCACCCAGACGCTGCCGCCCCGCCCCCCGAGACCATCTGGCCAGAGGGCTGGTAAAACCCCAGGTCGCGAAG # Right flank : GCGACGGGCGCCGTTGCGCACCATCGCCGACGCGGTCACCACCTGGCCCGAGTACGCCACCGCCGTGGCCGTCCGCCTCGACACGCACGACCAGATTTCGGTATGCGCGCCGCATGGCCTCGACGACCTGCTCGACGGGGTGTGGCGGCGCAACCCGACCAGGGTCAGCCCGGAGATCTCGCAGCAGCGACTCGCCCGCCACCGCCCCGCCCAACGTTGGCCCGCCGTCCGCGTGGTGACCTGAGCCTGCGTTCAAAGCCGGCGGAGGGCTGCCGCCGAGGCCTGCGGCTCTTGGGCCTGGAGCCGCTCGGAATCGTTGCCACGGATCCATATGGACTCGGAGCCGGAGGGTGGCGCGATGTCGCTGACCGACAGCATTGGTGCCGACTTGCAGGCGATGGCGGCGGGTGTGGACCGGGCGCAGCAGCAGGAGGCTGCGGCTGTCGACCATGCAATCGAGCAGATCACCGCCCGGGTGGTGGCCTCCGGGTTCGTCGGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCCTCCCCACGCACGTGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCCTCCCCACGCACGTGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 589633-592338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607753.1 Micromonospora coxensis strain DSM 45161 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 589633 29 100.0 32 ............................. CCGGCGTTCCACTCGTAGCGGCGGCCGGCGAG 589694 29 100.0 32 ............................. GCCCCGCGACCCGCCGATGGGTCCGGGGCCTT 589755 29 100.0 32 ............................. CAAGCTCCCGACACCCGGGAACTCACGGTGCG 589816 29 100.0 32 ............................. TTGACCGGGCGAGTCCAGCCACCCCGCCGCCC 589877 29 100.0 32 ............................. CGGACCTGATCACGCTGGGCGGCGCGGCCACC 589938 29 100.0 32 ............................. GCGGGTCTGCCGGTGGAGTTCGCCGCCGAGCT 589999 29 100.0 32 ............................. TAGGCGACGGCGTGCGGCGGCAGCTCGCCGTC 590060 29 100.0 32 ............................. TCGGCAGGGGTGGCGTGCTGGATCTGGCGCAG 590121 29 100.0 32 ............................. GACGCCGGCCGGGACCTGTCGCGGTTGCGGGC 590182 29 100.0 32 ............................. GTGACGGCGAGGATGCCGCCGACCCACACGAG 590243 29 100.0 32 ............................. GTGCCCAGCCTGGTCGCTGGCCAGCTGCGTGA 590304 29 100.0 32 ............................. CGGTGGGCGGAGGCGGGGGCGGGGGCGTTCCA 590365 29 96.6 33 ............................A GTCGAGACCGGCCGACTCGCAGAACTCCCGCAA 590427 29 100.0 32 ............................. CGCTCGACACACCGAGCAACCGCAACCCGTGG 590488 29 100.0 32 ............................. GCGACGCGCATGAGCTGCCGACCGATGCCCGT 590549 29 100.0 32 ............................. GCCACCTACCGGGAGACCGTCGGCATGTGGGG 590610 29 100.0 32 ............................. CCGGGCTCGTCAGCAATCCGGCGACGGAGAAA 590671 29 100.0 32 ............................. GACGCCGACGAGCAGTACGCCGCCCTCGAGCG 590732 29 100.0 32 ............................. CGCCCCGCCCCGGCCGTGAGGCCAGAGCGGGG 590793 29 100.0 32 ............................. CCACCGCCGCCCCAGTTGGGCACGGTCTCCAG 590854 29 100.0 32 ............................. AACTGCACGAGTCGCGCGACGGCGACACCGTC 590915 29 100.0 32 ............................. GAGGTGCCGGCCGGTGTCCTCGACCTCACGGC 590976 29 100.0 32 ............................. CTGCTCCTCGCCACCGGCCTCGCCGGTGGGTT 591037 29 100.0 32 ............................. AACATCCCCTGGTACCGCCGCTGACCTGACCA 591098 29 100.0 32 ............................. GTGAAGAACGGCTCGACGCTGCTCAGGAGCCC 591159 29 100.0 32 ............................. ACAGTGCGGTGCGGGCCGTCCTCGTCGTTGTT 591220 29 100.0 32 ............................. CTCGCCGGGTGGTGGAAGGTGAAGCTGGGGCC 591281 29 100.0 32 ............................. GCTGCGACCGGCGTAGCCGTTACCGGACCCGA 591342 29 100.0 32 ............................. CGGACGGGGTCCCGCACCAGCTCGGGTTTCTG 591403 29 96.6 32 .....................A....... CGGATGACGGTCGGCAGGGATGACCGGCCCGA 591464 29 96.6 32 ..............T.............. CCTGACTACCTGAGCGCCGCCGACGCGGCGGA 591525 29 100.0 31 ............................. GCCAGCGACATCATCGAGGCGTGGGCCGTCG 591585 29 96.6 32 .........................C... TACGGGATGGCGTTCCGGTTCCTGCCGGAGTC 591646 28 89.7 32 .............CT......-....... TTGCTCCTTGAACTCGACGCCGGAGGTCAGAC 591706 29 96.6 32 .C........................... CGGACAGCGGGGAGCAGCCTCACGGGTCAGCC 591767 27 93.1 34 ....................--....... CCTGCTCCCACGACCCCGACCACGCCGTCTGCCC 591828 27 93.1 32 ....................--....... CTGCTGGAGCTCGTTCTTGACCTGGCCGTAGG 591887 28 89.7 32 .....-.......G...A........... GGCTGCTTCGAGCCCGCCACCCGGGTCACGCC 591947 29 93.1 32 ..........T..G............... ATGAGATCAACATGTACGCGAAGATGCTCGCG 592008 28 86.2 32 .................AAA.-....... TCATTACGTACTACCGGGAGGGCCGGGGGCTC 592068 29 75.9 27 ...................TTCC.GGT.. CCAGCCCCGACCGGTCACCCCGTCGCT 592124 29 100.0 32 ............................. CCGAACCTGCCGAACCCGCGGTACTACCACGC 592185 29 93.1 32 .......................A....C GGCATGGGGCTGCTGCTGAACGGACTGATGGG 592246 29 96.6 33 ............................C GCCCTTGTAGTCGGCGATCGCCGACCGGCCTCG CC [592251] 592310 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================== ================== 45 29 97.6 32 GTCCTCCCCACGCACGTGGGGGTGTTCCG # Left flank : GAGGGGGTCGAGGAGGTCAGGCATGGCGAGTTGGCCAGCGGTGTCGTGCCTCAGCGAGCCGTCACCTGCAGTGTCCTCATACGAGCCGCTGCACTGCAGCGCGCTGAACAGGGCCCCGTTCTGCTTCTGGAAGCCAGGCGTCGCCTTGCCGACGTCGTGCAACCCTGCCCAGAACATCATCAACGACCTGGCGTGGGCGTCGTCAGTGGTCAGCCCCTCCACGATGATCCTTCGCTGGTTCGGGGCTAGGTAACAATCCCACAGTGCCCCGGCAACGGCAGCGGTGTCGATCAAGTGCCAGAGCAGCGGGTACGGCACCTCGAGATGGTTAGACTTGCCCCAGATCCCGGCATCGACTTCCTCGTGGTCGAAACCCAAGCCGACCGCCTCCGTCCACATCTGCTCGTGAGGGCGTCCGCATGCAACCACGGCCGTACGACACTTCCGTCCGCTCGATGCAGATCCGGGCACCGGCGGGATAAAGCCGCAGGTCGCGAAGT # Right flank : GCGTGGGCCCAACTCGTGTCGGCTCCGCCCGAAAACTGACCCCGTGGTTCCGGTTCCGCGGCTGCCGTCTACCTCAGCACTACCGGTAACGGCGCCATGTGACCTCATGGTCGTCTGCGAAGAGTGACCGCAGCCTGTGGGCCAGCTCGCGGGCTACCTCCGGACGGCCGGCAAGCGTGTCGATGGTGCTGGTAACGAGTTGCAACTCTCGAACCCGCCGCAAGATCGTCCACCCGGTCCAGGCCATGAGGTCAACGCCATAGGCATCGACAAAGTCCCTGTAGTCGTTCAGTGAGCGCCCGAACCGGGTAGCTCCGTGGGCGGTCGGTACGAGATCCCACTCCCGCGGACCGACGCTCATTCCATCCAGGTCGCAGAGCAGAGGCTCCCGACGGGCGGCGCGGCCCCCGCCCGATGCTGGCAAGAGAACGTTCCCAGTATGCGCATCCCCGTGAATGATGCCTGGCGGGAGCCGCCAGTCGACCCGATCCAGATCCTCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //