Array 1 19800-19221 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUI01000046.1 Escherichia coli strain KCJK8580 NODE_46_length_19813_cov_5.782993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19799 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 19738 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 19677 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 19616 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 19555 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 19494 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 19432 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 19371 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 19310 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 19249 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-901 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUI01000553.1 Escherichia coli strain KCJK8580 NODE_553_length_937_cov_3.729630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 141 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 202 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 263 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 324 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 385 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 446 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 507 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 568 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 629 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 690 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 751 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 812 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 873 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAATAGGTTATGTTTAGAG # Right flank : CCTAGCCCGATTATCGGCATGAGCGATGCGGAGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //