Array 1 1165-3148 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYKD01000216.1 Salmonella enterica subsp. enterica serovar Poona strain 34de NODE_33_length_42508_cov_7.05626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1165 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 1226 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 1287 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1348 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 1409 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 1470 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 1531 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 1592 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGGCACCAAA 1653 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 1714 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 1775 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 1836 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 1897 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 1958 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 2019 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 2081 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 2142 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 2203 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 2264 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 2325 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 2386 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 2447 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 2508 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 2569 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 2630 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 2691 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 2752 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 2813 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 2875 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 2936 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 2997 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 3058 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACATCTCTAAAAA 3119 29 96.6 0 ............T................ | A [3146] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAAGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGAATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGGTTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGAGCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15378-15045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYKD01000183.1 Salmonella enterica subsp. enterica serovar Poona strain 34de NODE_2_length_99902_cov_7.02351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15377 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 15316 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 15255 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 15194 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 15133 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 15072 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //