Array 1 1999-3826 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYMQ01000134.1 Serratia sp. H1w Contig134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1999 28 100.0 32 ............................ CGTGCCCAAAGGACCGGCGGAGCACATTGGTA 2059 28 100.0 32 ............................ TGCCATATCAAAGCAATCAGCTAGGGTAGGGA 2119 28 100.0 32 ............................ AGGGATGCGGCGAGGCTTCTCTAAGAAGTTTT 2179 28 100.0 32 ............................ ATGAAATCCCTACATTTCATTCACTCGGGTGT 2239 28 100.0 32 ............................ TGAACGCCATCGGCGTACGGGATAACGATTTC 2299 28 100.0 32 ............................ TTACCTCTCGTTGATACTCTCAACGCAGTAAA 2359 28 100.0 32 ............................ CTGAAAGTTGCCGGTAAAGAAATCAAGTTTTC 2419 28 100.0 32 ............................ TCATTCACAGCGCTGGCGATGCCGTCGACGGC 2479 28 100.0 32 ............................ TTATCCACCCGTTCCCACGTGCTGGCCATCTT 2539 28 100.0 32 ............................ CGCTGAAAATGGCGCACAACGTCTGTTTGTTC 2599 28 100.0 32 ............................ GTTTGCATTTTTCGGCCTCCATTGTGCTACTT 2659 28 100.0 32 ............................ GTGGAAGCGCGTGGAGTAGAGAAGTTCGCGGC 2719 28 100.0 32 ............................ GTAAGGCCGGTTACACCTGCCAGGGAAACACG 2779 28 100.0 32 ............................ TGAATGGGTGATCACCGTCGCCCGGAAGCTGA 2839 28 100.0 32 ............................ AGCAGTGCGGTTACGTACTCTTGCGAGTAAGT 2899 28 100.0 32 ............................ TTTATAATGTTTACGGAACGCCTCAAACAACC 2959 28 100.0 32 ............................ ATAGGGCAGCAGCTAGACCGTATAGCGTTGTT 3019 28 100.0 32 ............................ TGTTTCTGTTTGAGTTGGTTGTATTCGCAATC 3079 28 100.0 32 ............................ CATTTCACGATCTAACTTCCATTTCCTGCCAC 3139 28 100.0 32 ............................ CTACTCCCGCAAAACATGGTGGTGAAGCGCCT 3199 28 100.0 32 ............................ GAAGGCAGTGGAGTGTCGCTATCCCATGCATC 3259 28 100.0 32 ............................ TCTAATGGAACGCTGGCCGTAACGCCAACTAA 3319 28 100.0 32 ............................ CGTAATAAGTGGCGAATTGTTTCGCTATCTTG 3379 28 100.0 32 ............................ TGGTGAACATCACCATGCTGATGGCTTGGTTC 3439 28 100.0 32 ............................ TGTATGACGTTGAAACTGGCGAAGTGATTGAG 3499 28 100.0 32 ............................ AACTGGTTCAGCACTGCGGCCAGGGCAAACGC 3559 28 100.0 32 ............................ TTCCGGCGCAGCAGCCGAGATTCCTCAATAAG 3619 28 92.9 32 ..T.....T................... TATGGGGTTTGCATTGCCCAACGGCGCCACAG 3679 28 96.4 32 ..T......................... AAAGGCTATCAGGACGGCCTTAATTTAATTCC 3739 28 92.9 32 ..T......T.................. GCATGTGATTACATTTATACCGCCGGGATGGA 3799 28 85.7 0 ..T..........TC............G | ========== ====== ====== ====== ============================ ================================ ================== 31 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGATGGTAACAACATCCTTCCTTTTACGGTTTACCTCCAGGGCGATGGTGTACCGGGAAATATTAAAGCAGGCGACTATCAAGCTGCGGCAGGCTTCATGCTGAATTTCCAATAAGCTATTAATTCTCATGTGAATATCGGGAGCCTGATGGCTCCCTTTCTTTGTTTACCCAACGAAGCTAACCAACCCCATCGAATTGAAGGAAATTTAGGGTACCGGAAGGACGCAGCGCAAGTGAAAAAATAAAGCAGTCTCGATACTGTTGTAACTAGCTAGCCAGTAGTACCTTTATGGCAACTAAAAAGTCTAGAAAGAAATTGAGCAACGCCATAAGACCCGTGATGCAGACTCTTTCCTAATCTGGTTGAACCCTAATTTTAGTAGTGTAGATAACTTATTGATTTTGTTAGTGAGAATGTTAGTCCATTAAAAAAGGGTTTTCTGGCTAATATGAGGATTATTGTTTAATTAACAGATGATTGGGGATAGGATAGAACA # Right flank : GAGGTGGCACCTATCTGGCGCGATTTCAGCCAGGGCCACTGCCGTACCGTCAACTTTCCCATCCTAGCCCTATCTTTATCATTAAGGTAATTTATATAAATCATTCATGGTTTTTATCTATATAAATGATTCATAGTCAATAAAAATTAAATAAAAACATAACATTCATCACTCTATCTAATAAGTAAAGTGTGCTAAAACATCACTATCGCGTGGACATCTGGCATAGAGCGTCTAGAGCCAGGTGGCTTATGGCATAAAAACAGGGATGTTTTCATCAATGCAAAATCAATTCTCGCCTTCCGAACTCAAAACTATTCTGCATTCAAAGCGGGCAAACCTCTATTACCTGCAACATTGCCGGATCCTGGTCAATGGAGGAAGGGTTGAGTATGTCACAGATGAAGGTAAGCAATCTTTATACTGGAACATCCCAATAGCCAATACTACTGCGGTGATGCTGGGGACGGGAACTTCCGTTACCCAAGCGGCAATGCGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 93285-92808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYMQ01000106.1 Serratia sp. H1w Contig106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 93284 28 100.0 32 ............................ TATCACTTTAAAAGCGACCTGGCCAGACTGCT 93224 28 100.0 32 ............................ AGTAGCAATCAGAATGCGCGGTTGATAGCCGG 93164 28 89.3 32 ..G.........AT.............. AATCTGGACCCTGCTGTAGTGTTTGGGGCATT 93104 28 82.1 32 ...A....T...ATC............. GGTCTAGCTTTCTCAGGGGTAAACCGGCTAGA 93044 28 96.4 32 ............A............... GTCGAGCTGCGGGAGGGCCGGGTATGAGCGGA 92984 27 92.9 122 ......................C.-... GCCGAGGGGGGTATAGATAACCCATTGATCATCCTGACGGGCGCAGCATGCAGCGCCCCTACGTTTGAGTCTGGTGGTTTTTTATATGGTTTCGTAATTCAAATCCTTTGGTTTCTACCAAT 92835 28 67.9 0 .C...TA..AA.A.C......AC..... | ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 7 28 89.8 47 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGAGCTTACCGCATTTGAGACCTTACCATGGCGTAAAGGGCTGCGGGATTACACAGAATGCAGCGAGATTCAGCCAGTACCCTCTCATGTGAAATATCGTACTGTGCGGCGTGTGCAGTTTAAAAGCAGTGCTGAGAGATTACGCCGTCGCTCTGTTAGCAAGGGTTGGCTCACAGAGGAGGAGGCCAGAATGCGTATTCCTGATTCTGTTGAGGAACGTTCGGCGCTGCCATTTATCCGTTTGAAAAGCCTATCCAGCGCGCAGACCTTTTTGTTGTTTATCGAACAGGGCAAGATTTGCGATAACGCGACAGAGGGGGTATTTAGTGCTTATGGCCTAAGTGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAGTGGCTGATTCTAACCTATTGATTTTAAAGGTTGGGATCAGTATTCTTTAGAAAAGGGTTTTTGAGTGGGATGGCCGGATTCTATTTTATTAATAGTAGGTTGCTGTTGGTTTGTAACA # Right flank : TCAACTTCAAATGTTTCCGCGAGGGCCTCTTCTGTTACATTCAACGAACAACGCCAAAAGGGAATTTAGACATGAAAAAACTCACCTCTGTGTGTCTGGGCTGCCTGCTGTTTGTCTCTGCCTGTAGCCCCCATAAAAGCACCCGCACCCAGCCTATCGAGCTACAGCCACAAGAAATGGCACCATTTGTAGATAAAACAACCTATTACCTTCGTGCAATTCAGACCGCCATCCAGCGAAAGTTTTTTATTGGAGATAACTATCGGGGTAAGACTTGCGATGTTACGATCAAGATGTCCAAAGATGGGCTGATATATGACGCGCAAGGCAGCGGTTACCCGCCGCTATGTGAAGCTGCGCTGAAAGCCATCAAAAATGCTGACATACCCGCGCCTCCTGACGATGAAACCTACCAAAGAATCAAAAAAACAATCATTACCTTCCAACCGGATTGAGTGTCAGATACCAAGAGTTGTTGGGCTGATGGGAGTAAAGAGGAA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-1.47, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //