Array 1 43093-44585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBB010000084.1 Escherichia coli strain C10-2 c_000000000084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43093 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 43154 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 43215 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 43276 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43337 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43398 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43459 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43520 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43581 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43642 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43703 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43764 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43825 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43886 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43947 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 44008 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 44069 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 44130 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 44191 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 44252 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44313 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44374 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44435 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44496 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44557 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70285-71168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBB010000084.1 Escherichia coli strain C10-2 c_000000000084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70285 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 70346 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 70407 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 70468 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 70529 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 70590 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70651 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70712 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70773 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 70834 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 70895 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 70957 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 71018 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71079 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71140 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //