Array 1 10084-11428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLK010000005.1 Alcaligenes faecalis strain 2021EL-00128 NODE_5_length_218937_cov_22.138604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10084 28 100.0 33 ............................ TATCGTATGGCCGCAGCACACGCACTTTGCCAA 10145 28 100.0 32 ............................ AAAATATTGGCAGACGACTCGGTACTGCCGTG 10205 28 100.0 32 ............................ TTCAAGGCCCAGACAAAGCCTATGCAGCGCAG 10265 28 100.0 32 ............................ TTGCAGAACACGGCCTCGGCAATCATGGCCAC 10325 28 100.0 32 ............................ ACCAGTCGTGATATTGCGCAGTTGCTGGCTGC 10385 28 100.0 32 ............................ CTCTGGTGTTGCCGTCAGCTCATGCAGTAGGT 10445 28 100.0 32 ............................ AGCTTGGTGGCCACCCCGTTGACCATCCAATC 10505 28 100.0 32 ............................ CTCCGCCATTCGACACTGGGATACTCTCAACC 10565 28 100.0 32 ............................ TCGTCGACAAAACCCTGGACCCATGGCTGTTC 10625 28 100.0 32 ............................ ATGGACACGTGAGCTCGGGCGTCGAACTCTTG 10685 28 100.0 32 ............................ TACCTCGGGGTTATGAACGCTTGGCTCCGATC 10745 28 100.0 32 ............................ TTCCCCTCAGGCTGAACTGCGAGTCTCTCTGT 10805 28 100.0 33 ............................ ACGTGCCGATTGAGGAGGTGTGGGGAGTGGGCA 10866 28 100.0 32 ............................ CTCACGATTAAGGTTTTGCTCCCCAACCCCAC 10926 28 100.0 32 ............................ ATGGAGGGAGTGGGGGAGAGGTGTTCCAGCCT 10986 28 100.0 32 ............................ ATCTGGCTCAGCGTTTCGGCTGGGCACCACTC 11046 28 100.0 32 ............................ TATGTGGGCGTGTTCGTCCGGCTCAATAGCAT 11106 28 100.0 34 ............................ CAGCGCGTCCCGCTCGGGGAGCAGCTGGGCCAGC 11168 28 100.0 32 ............................ TGTCAATTCCGCCACCTCGGCTTGAGTGAGGA 11228 28 100.0 32 ............................ AACCAGGCCAAACACGGCAAGGGGATGGGAAT 11288 28 100.0 32 ............................ ATGCTCGGACGTTGTGGGCGGTTGTCCACCCG 11348 28 82.1 26 ...........AA....TG.T....... CGCCGATCGTTCGAGGGGGGGTAAAT 11402 27 78.6 0 ....-......CT..A......CG.... | ========== ====== ====== ====== ============================ ================================== ================== 23 28 98.3 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCGGGATTACGCAGGGCGGCTTGTACATCACAGTGGCGGTGAATCAGCCACGCCCCACCACAGAAATCTGCATCCCACACCACGGGCGGCCCCTGACGAAGGCGGGCATAAGCCGCATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACCGTTTCCTAAAGATCAAAGCCAGCGTAGGCTAGCACTTGAGCCGAAAAGAGGCAGTCAGGAGATTGTGTCTATTAACTCTTTCTGGGTTTTTTGAGGGAATTAAAAGTTTGTTTGCGGTTTATGGGGGAGGTTGCTTGATCTTGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTTGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAATTCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AAGCTTGTGGGTCTCTATCATGTATATGCAAAGTGTGCTGCTCTATGCGCCGCTGAAAAGGTGTTTAATTTCAGTTGTTTAGCCAGTTTTGTAATTGGTTGTCGCCTGTTCAGTTGCTAGACCGTTGCTGGTAGCGGCACTGTCGAAAATGCAGTTTAGGACTACCTCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTTCTTCACTACCCAGTTTTTCCGTTTTACGCTGCGGCAGCTTCCCATTCAGAATGAAGTACGCCAGCAGACCGATCACCAGTCCCCAGAAAGCCCCGCCAATCCCGAACAGTGTGATATTGGCCGCTGAAGCCAAAAAGGTAATCAAGGCTGCTTCCCGTGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29922-31750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKLK010000005.1 Alcaligenes faecalis strain 2021EL-00128 NODE_5_length_218937_cov_22.138604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29922 28 100.0 32 ............................ TAAGTGCTAAAGCATTTGGCATCACACTTACT 29982 28 100.0 32 ............................ ATCGGTTTGAATTGCCGGTGGGTTTTACTGGC 30042 28 100.0 32 ............................ TATATCAATCTCAGTAAATGTGGAAAATAGGC 30102 28 100.0 32 ............................ CCAACATTCTCAAAAGAGCGCCCCCACCATCC 30162 28 100.0 32 ............................ TGAAAGTATCTGACGCCTTGATGTTTCCGCTG 30222 28 100.0 32 ............................ TAAACGTGACGTGATTGGCGTACTGTGCCAGA 30282 28 100.0 32 ............................ GAGACCCACAAGCGCATAGAGCACAAGCTGTA 30342 28 100.0 32 ............................ CAGTGGATGTTGCGCTGGGTATTCAGAACAGC 30402 28 100.0 32 ............................ AGCTGCACCAGCTGGCCAGGAACAGGCAGCAG 30462 28 100.0 32 ............................ ATGTCGTAATTCCAAACGCTGCCCAGACTGAC 30522 28 100.0 33 ............................ CTCACCGAAATGCAGTGAACCTGGAGCATGAGC 30583 28 100.0 32 ............................ TGCACCTGGTCGGTCAGTGGCCGCACGTTCTC 30643 28 100.0 32 ............................ AGGCACACAACAGCGCGTAGGCTTCGCCATTA 30703 28 100.0 32 ............................ GTGACCCCGCGCATCCCACCACCAGCCCCCGA 30763 28 100.0 32 ............................ TTTGATAACGTTCGTGACAGTTTGGACTTGCT 30823 28 100.0 32 ............................ TGGCATTGCGCCGTAGCGTTTGCGTACGTGCA 30883 28 100.0 32 ............................ TCTGGCAGCGCATCAAACTCGGTGACCTCCGT 30943 28 100.0 32 ............................ TGGACAACCTGCTGGCCTGCATAAAGCCGCAG 31003 28 100.0 32 ............................ ATTGGCACCTTGACCGCTATGCCGATCCTTCA 31063 28 100.0 32 ............................ TGTCCAAGCGCGCAGAGCTGCGCGGCCAGATG 31123 28 100.0 32 ............................ AGCGACAATTGGGCACGGCGACGCAGATCATC 31183 28 100.0 32 ............................ TTGTCAATCGCCCAGCAATAGCAAGAGCGCTC 31243 28 100.0 32 ............................ CTTTTCATTGGGCTGCAGCTCTACGGCTCAGC 31303 28 100.0 32 ............................ TTGGACAATCCCCCCGCTTTGATAGCCAACAA 31363 28 100.0 32 ............................ AAAGGAAAAGAAGGGCCCGAGTATGCCCATGG 31423 28 100.0 32 ............................ CATTGAGACTCAAACGACCGACGCGCCTGCTT 31483 28 96.4 32 ...........T................ TTGGCTAGCAGCTTTTCTTGTTCGGTTTCCAA 31543 28 100.0 32 ............................ GGAGATAATCTGATGGACTTACCCTTTACCTT 31603 28 92.9 32 ............T....T.......... AATCACTCGGGCCGCCAAGATCGGGCCGAAAA 31663 28 96.4 32 ............G............... GTTATTGAAATGACCGTGAATGCGTGTTCGGC 31723 28 75.0 0 ...........AG....TC..C...GC. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.7 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCAGAGTTGCAGAGTCTGGAGCAAACGCAGTGGTTACGTGGGATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCTTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCGGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGACTTGCCTTTTATGCAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAGCATGGAGTTCCTGCGGCCGGGGGGTTTAATGCTTATGGGTTAAGTTCGGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTATTAAAAATAATTATCTTTAAAAATCAATGGTTTGGGATTTTTCTAAAAAAAGGGTTTTAGAGGTGAAAAAGCTGGAAAGCGCTGAGGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : ATATTTTCACATCGTTAAGTGCCTGTTATTTTTAACATTAGCCGCTCGTTATCAATCAATAACAGAATTTATTTTCATTTATTCGCCTGTACTGATCTGCTGGTCCTTTAGTGACTGGCTCATGTTTCCACTCCAGGGTAAACAGGATTCCTTGTTTATCTCCTCCCCCTTTCAGCCCCTCTCCAAACAAGCTTCTTTACCCTGTTTCTTGAAGCTCCCCAAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTACTACTTTTTTGATCACCTGCCAGGCATGACGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //