Array 1 54078-53749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000011.1 Meiothermus sp. QL-1 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 54077 35 100.0 38 ................................... CCGCATGGCCCGGTCCAGCTTGCTCACCGTGTACTCCA 54004 35 100.0 41 ................................... CTATGTAGGTTCCCAGAATGCCCGTTATCAGCGTAGCCCAA 53928 35 100.0 37 ................................... CAGATGGTCTGGACAATGAGAAACTGCCCCGTGTTTA 53856 35 100.0 38 ................................... TTGTTGTACGTCTTGTACTGTTCGCCGCTCACAATAGT 53783 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ========================================= ================== 5 35 99.4 39 GTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Left flank : TTTTGCGTAAGAAGGTGGACCTCACCCAGGACAGCGTCCGGATATACCCCGTTGGGGGTACGGTGGAGGTGCTGGGCACGGCCCGCCTGTCCGAGAACCCCGACTACCTGATTCTCTGAAGCCCGCGTTACACCCGGCGTTACTCTGCTTTTACGAGCTAAAAATACGATCGCGAAGGCACACGCTCTTCTGAAAAATGCCCCGAAGATACCGTTCCAAAGGCCATGGAAGCGCTTTTTTAGAGTGAACCATTATGTTTTGCGCAAAGTGCTATGCTGTAGTCGCCGGGGTTATCCGGCAGGTTCCTTGAAAACAGGTTTCTTCGATTCTTATCGCAACATGCGAATGCGAAAAATCTAAAAGCGCGACTTTGTAAGCATCCATCGTAAAAAACCGCGCTTTTTTTGGAGTTATCCACAGGTTGCCTGTGGATAACCAGCAGCTCTCATAAAACCCCCCTCTGGGGGTGCTGTACAGAACGGCATTTAACGGGGTATGCT # Right flank : AAACCCTTCCTTCACGCTGTAGGGGAAGGTGAGCCATACAGCCTGCTGAGAGCAAAACTTGCGATGTGGATGACCCTTACCAAAACCGCCCCATGCGGTAAGGGAGGAGCTTGTGGCACCTGGCCTGCCAAGCTGGGCATGTGAGCAAGGCAAAAGTCCAGTGTGGCCATGGGCTGGCCGGACAGACAAAGGAGCAGGGTGGTAGAGGCGATTGAACGTCTGTTGCCCAAGCGGAGGTTGGGGTTGTTTTTTTTGACTGTTGGGGCAGGTTTTTTGATATACCTTTGGCATGGAAACCCAGACCCACAAAGTGCTCATCCTGACCGTGGGCCAGACCATCGAGCCGCTAGAGTTTGCCCTGGCTGAACACGCGCCCCTTAGGGGCGTGATTTTTGTGGCGAGCCAGTCGAGCTACCCGGTGGCAGGTGATTTGCTTCGGCAGTACGGCGGGCAGTTCAGTCACCATACCCTGCTCATTGGCGACCACGAAGACCTGAACG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 22831-22421 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000003.1 Meiothermus sp. QL-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 22830 36 100.0 38 .................................... CGTCCGCCGGGCGCTCCAAAATGACCCCCCGGGCCCCC 22756 36 100.0 37 .................................... GATGAGGCCCACCCGTTTGCCCTCCCTGGCCGCCAAA 22683 36 97.2 39 A................................... GCGGTGATGATGGTGCCGTAACTGTCAGGTACACGGTCG 22608 36 100.0 38 .................................... TATTTTCAAGGGCCCGTCGGATCTGTTCGTGTTTCATC 22534 36 100.0 42 .................................... CTTCTTATTGACGAGTCCGGGAGCATGGGGGCGTCGGTGCCC 22456 36 94.4 0 A.................................G. | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 98.6 39 TGTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Left flank : GGAATTGCAGCCGGCCTGCGAAACGCTGGATGAACCCAGCAAGCACGGCGAGCTTTAGGCTCCCGCGCTCTGCGCTCCTGTCTCTGGTCGGCAACCCAGGAAACCGCGAAGCTGCTAGGGAATGCCCGTTACGCCCAACGTTACCTCGCTTTCATGGGTCAAAAATGCGATGGCAAAGGCACGCGCTTTTCTAAAAAATGCCCCGAAGATGCCGTTCCAAAGGCCATGGAAGCGCTTTTTTAGAGTGAACCATTATGTTTTGCGCAAAGTGCTATACTGTAGTCGCCGGGGGCTCCCGGTGAGTTCCTTGAAAACAAGTTTTTCCGATTCTCATCGCAACATGCGAATACGAAAAATCCAAAGGTGCGACTTTGTAAGCATCCATCGCAAAAAACCGCACTTTTGGGAGGGTTATCCACAGGTTGCCTGTGGATAACCGGCAGTTCTCATAAAACCCCCCTCTGGGGGTGCTGTACAGAACGGCATTTAACGGGGTATGC # Right flank : GCCAGGGCCAACACCAGGGTGGGCCCTGGCTCAGTGCAGAACACAGCGGTATTCCGGGAGCCGGCTATCAGCTTGTGTTATGTTTTACTGCTGGCGGCACATCAACCCAGAGGCCCCAAACCAAAAGCCCTCTGCGCAAGGTGTAGCAAACCCACATCGCTACCCCAAGGCCCCACAAGCTGCACCCCAATGGGCTTTTCACCTGGAAGTTCGGCGGGCAGCGAGACCACCGGCGTGCCCAGCACACTGGCGTAACAGGTGAGGCTAAGGGCGCGCCAACGAAAGGCCAGAGCCGCTTCTGCTTCTTGCAATTCGCTCACCAATGGGGCTGAACCAGGGGTTGCGGGCAGCAGTACAAGCGTACCGGGCAAAAACCAGGCACCCATCTCGGCTCTTAGGCGCACCTGCTCGCCCAGCGCCCGCCCAATCTCGCCTGGGGTAAACCTCGAGGCCATCTCGAAAAGTCTGCGCACATCCTCGCCCAGGCGGGGCTGCGCCGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 39613-40379 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000001.1 Meiothermus sp. QL-1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 39613 35 100.0 34 ................................... TGGGGGTTTAGGGGCTTGCCGGGGTCGTTTCCAG 39682 35 100.0 34 ................................... TGGGGGTTTAGGGGCTTGCCGGGGTCGTTTCCAG 39751 35 100.0 38 ................................... TCTTCTTGGGCCATATCCTCAGAGTATCCTTGTGCCAG 39824 35 100.0 39 ................................... ACTTCCGGTAAAGATACATTGGGCCATTCAATGTCGCGT 39898 35 100.0 39 ................................... TCCAGACGGGCCCACAGCTTTCCAAGAAGCGGGCGATGA 39972 35 100.0 38 ................................... TGGCAGCCTGGGACTGGGCCGCGCGGCGCAGACGCAAC 40045 35 100.0 36 ................................... TCCGATCATTTTAAGGTTACCTCCTATCTAGGAGGT 40116 35 100.0 44 ................................... CATGGGGGGCGATTGGTCGGATACCACCAGCGCCAAATCTCAAT 40195 35 100.0 40 ................................... CTGGCCTGCTGGGCCGACCGGGTGGCCTTTTTGCAGGCAG 40270 35 100.0 40 ................................... CCTGCGGCGAGCAGGCCCCAAACACTATCCCCTCCTGCCA 40345 35 97.1 0 ...............................A... | ========== ====== ====== ====== =================================== ============================================ ================== 11 35 99.7 38 CTTGCAAACGAATAGCCCCGCAAGGGGATTGCAAC # Left flank : GCAAGCGATGAGCTCCGTACCAGGCCTGCCCATGGACGCTGCGGGCTTCCATGCCTGCGCAATAGCCCCAGAGGGAACCGGGGACTGGGAGGAGGCTCCCACCCCCCATGGCCCTGGGAGGCGGCCGTTACGGCTGGCGTTACCCCACTTTCAGGCGCCAAAAATGCGATCGCAAAGGCACGTGCTTTTCTGAGAACTGCCCTGAAGATGCCCTTCAGAAGCCTATGGAAGCGCTTTTTCAAAACAGCCCATTATGTTTTGCGCAAAGTGCTATACTGTAGTTGCCGGGGGTTCCCGGCGGGCTCCTTGAAAACAAGTTTTTCCGATTCTCATCGCAACATGCGAATACGAAAAATCCAAAGGTGCGACTTTGTAAGCATCCATCGCAAAAAATCGCACTTTTGGGGGAGTTATCCACAGGCCACCTGTGGATAACTGGCAGTTCTCATAAAACCCCTCTCTGGCAGTGCTGTACAGGACGGCACATAACGGGGTATGCT # Right flank : CCCACTGCGGAGCAGACGAACCGGCGCTATTCTAGCGCGCGCCGATGATGTAACTCTCCAGCTCGGCAATGAGGAAGGCCTGCTGGTTCATGATGGCCTTCACCACATCGCCAATGGAAACAACCCCTACCAGCTCTCCGTTTTCCAAAACCGGCAGGTGGCGCACCCGGTGGCAGGTCATCAGGTTCATGCAGTGCGCAACTGTGTCTTCTGGGCATACCGTCACCAGCTCGGTGCTCATGACCTCCTCCACCCGGGTATCCTTGGAGAAGCGGCCCATCAGGATAATCTTGCGGGCGTAGTCCCGCTCAGAGAAAACCCCTGCCAGCCGGCCCTCTCGCAGCACCATCAGGGCGCCCACATCGTGAACAGCCATGCGCTCTAGCGCTTCGAAAACCGTGGCCTCGGCTGGAACTGTATAGACTGCGTGCCCTTTGGTCTGGAGTAGCTGGCGCACTGTACTGGCCATATCCACCTCCCCTATAGACAGCGCAGGGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAAACGAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 128614-129175 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000001.1 Meiothermus sp. QL-1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 128614 36 100.0 39 .................................... TTGACAGTCACACGGATGTCCACGGTATCCTCGGCGCCG 128689 36 100.0 39 .................................... GGTGGGATGATCTGGATCCCCAGGAGAAGGTCCGGATAG 128764 36 97.2 40 C................................... GAGGTACGCCTCATCAACGACGACGACTACGTTTTGGGCG 128840 36 100.0 40 .................................... CCAGCCCATTGATGCGGATTATGGCGGCCACGGCGGCCCT 128916 36 97.2 36 G................................... CCTCTACCCGGCCGGTCTTCTCTAGGCGCTTGAGAA 128988 36 100.0 42 .................................... CAGGGCTCATGTATAAGCCTTATCACTTTTTTCCTATATACC 129066 36 100.0 38 .................................... ACCTTCATGACACCTCCTAAAACGCACCGCTTTACGCC 129140 36 91.7 0 A...........................G.....G. | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 98.3 39 TGTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Left flank : GGCTTCTGAAGGAGCGGTAAGTGCTTTATTTGGCAAATTTTTTGTCGATATGCTGCACCGGGGATTGTTTTTTCTTTTTGGGTTGAATTTAAAAAGCTCCCAGCCACCACGGTCCCGAGAGGCGGCCGTTACGCCCAACGTTACCCCGCTTTCATGGGTCAAAAATGCGATGGCAAAGGCACGCGCTTTTCTGAAAAATGCCCCGAAGATGCCGTTCCAAAGGCCATGGAAGCGCTTTTTTAGAGTGAACCATTATGTTTTGCGCAAAGTGCTATACTGTAGTCGCCGGGCCTGTCCGGCGGGTTCCTTGAAAATGAGTTTTTTCGATTCTTATCGAAATATGGGGATACGAAAAATCCAAAAGCGCGACTTTGTAAGCATCCATCGTAAAAAACCGCGCTTTTTTTGGAGTTATCCACAGGTTGCCTGTGGATAACCAGCAGCTCTCATAAAACCCCCCTCTGGGGGTGCTGTACAGGACGGCATTTAACGGGGTATGC # Right flank : CCATACGAAAACCCCACTGAACAGTCTGCCTGGGTTGGCAATCAGGCCATATAAGCAAGTTTGGTTCGAGGAACCCACCAGAGTAGGCCCCGGCCCTGCAGGACGGGGCAACCTCTGGGAAGCCGGTCGGGAGACCATCAACCCCGACGCTCCAACCCAAAAGCCCTCTGCATGGGGCGTAGCAAACCCACATTGCCACCCAAAGACCCCTCGAGCTGTACTCCAAATAGGCTTTTCATCCGGCAGTTCGGCGGGCAGCGAGACTACCGGTGTGCCCAGCCCACTGGCCTGACTCCCATGCCCCCACGGTGTGGTGGGAGGCCTGTGGGAGTGTAGAGAACGCGCCTTCTGCAACGGGTAAACTGTGCCTATGCCGTCGGGCCGAGTGCATGAAGCTATCAATCTGAGCGTGCTAGGGTTGGCCGCCGGGGTTTACTGGCTTTATCGGGAGACGCTCGCCATACCGGAGCCGATAGCGGTGGCCTTTGTGGGGAGCTATT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 520634-519546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000001.1 Meiothermus sp. QL-1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 520633 35 100.0 40 ................................... TCGCCCCACTCCTCCTCGCGCATGATGGGCCCCACGCCGG 520558 35 100.0 42 ................................... CCCATGGTGCTCGCGCAGGGCCTGCTCTATCTCGGTTTTACT 520481 35 100.0 41 ................................... CCTCGTGCGCCTTTTCCGTCAGTCCCATCCTCATCACCTCC 520405 35 100.0 37 ................................... CCAAAAGCGTTCCGCCCGGGCTGAACCCGTTCACGGA 520333 35 100.0 42 ................................... CCGCCGATGCGCTCAAGGCTTTGGACGAACTTGTCCGAAAGC 520256 35 100.0 40 ................................... AACGGCCATTTTAAGGCGCTCTAATACTTCGTAAGCTTTA 520181 35 100.0 43 ................................... TTTTCTGGTAGGACGACCACGTACCTAACCATTTTCTCCTCCC 520103 35 100.0 39 ................................... ACGTCCTCTATCTGCTCCCGGCTCACCACGCTTCGATTG 520029 35 100.0 41 ................................... GCGGACACTGAGCCCTAGCGCCGGGAGAGAATGCCAGCCAG 519953 35 100.0 40 ................................... AAACGGCTTCCTGAAGAGCTTCCAGTACCTGGGTATAGCT 519878 35 100.0 40 ................................... TTTTTCCCCTTCTCAGAAGGGGAGGTCTTCTCGCTTCTCG 519803 35 100.0 38 ................................... CCGTCTACCGTGCCCTCATATACCATTCTGCCGTTCTG 519730 35 100.0 40 ................................... CTCGGAAGAGGATCGCAAGTGGCTGGCCCGCACCCTGGGT 519655 35 100.0 40 ................................... CTGGCCATGCACATCGCCATGACCAACCCCCGCTACGTAA 519580 35 88.6 0 ...............................TCGT | ========== ====== ====== ====== =================================== =========================================== ================== 15 35 99.2 40 GTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Left flank : TTTGAAAACCGGGGGATTATAGCTCCCCCACACCCCCTCTTTTCTCTAAAGACCAGCAAGCACCGGGCACCCAAGAGGTTCAAGGAACTGCAAGGCTCCCGACCCTTGTGGCTCCGGAAGACAACCGTTACGCCCAACGTTACCCCGCTTTCATGGGTCAAAAATGCGATGGCAAAGGCACGCGCTCTTCTGAAAAATGCCCCGAAGATGCCGTTCCAAAGGCCATGGAAGCGCTTTTTTAGAGTGAACCATTATGTTTTGCGCAAAGTGCTATGCTGTAGTCGCCGGGGTTATCCGGCAGGTTCCTTGAAAACAGGTTTCTTCGATTCTTATCGCAACATGCGAATGCGAAAAATCTAAAAGCGCGACTTTGTAAGCATCCATCGTAAAAAAGCGCGCTTTTTTTGGAGTTATCCACAGGTTGCCTGTGGATAATCAGCAGCTCTCATAAAACCCCCCTCTGGGGGTGCTGTACAGGACGGCATTTAACGGGGTATGCT # Right flank : GAAAGCAGGTCCTGGTTACCCATCCGCCAGGGGCTGGGCGTATCCACCACCCGATGGATTGACAAGGAGAGCGACGTATTCACGCTAATGTGATGCCCCTCCCCTTCAAATGGGTTTTTCTGGGGATAATCTGAAGACGGGATGAGCCAGCTATCTGAAGCCTCGGTGCTCGAGGCGTTGAAAACTGTAAAAGACCCCGAGCTCAACCAAGACCTGATCTCCTTGGGCATGGTGGAACGGGTGGAGGTGAGGGAGGAAAAGGTATCGGTCAAGATAAACCTAACCACCCCCGCCTGCCCCCTGAAGGAGAAGATTGAGGGGGACGTGCGCAGTGCTCTGGAGCAGCTCGGGGCCAGGCAGGTGGAGGTGCAATTCGGCGCCCAGGTGCGCGCACCGCACAACCTGCCCCTCCCCGGCATCAAGCACATTGTGGCCATCGCCTCGGGCAAGGGGGGCGTAGGCAAGAGCACCGTAGCGGCCAATCTGGCTGTGGCGCTAGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACAAATAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 37249-41988 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000004.1 Meiothermus sp. QL-1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 37249 29 100.0 32 ............................. CGGACCCCCGGCATCATCGAGGGGGGGAGCAT 37310 29 100.0 32 ............................. TTGCCGAACCCCGAACCGTCCACCATAGCTAC 37371 29 100.0 33 ............................. ACTCCGGTTTTCGCTTGTACCCCCACGCCATAC 37433 29 100.0 30 ............................. GGCTATAGCCGCCGCGGCAGCAGGGGGGAT 37492 29 100.0 32 ............................. GGCGCTGTTGAAGAACCTCGGTGCGATTCATT 37553 29 100.0 32 ............................. TAGGGCCCTAGCCGCAAGGGGAGTAGCGTGGA 37614 29 100.0 32 ............................. AAACCACGTCCAGGACGATAGAAGAGGTTGCG 37675 29 100.0 32 ............................. GACGGGTACGTGTCGAATTTTTGGCGGGCCAT 37736 29 100.0 33 ............................. GGGAAAATGCGAAACTCCTCAGGGGGCGACCCC 37798 29 100.0 32 ............................. AAACCACGTCCAGGACGATAGAAGAGGTTGCG 37859 29 100.0 32 ............................. GACGGGTACGTGTCGAATTTTTGGCGGGCCAT 37920 29 100.0 32 ............................. GTGGACGCGCGCTTCCTGGACCCGGCGTATTT 37981 29 96.6 32 ............................A GATGCGCGCGATGAAGGGCCTGGCCACCAGGC 38042 29 96.6 32 ............................T ATGAGGCCGAGTTTGTCGAGGCCGGCGGGGCA 38103 29 100.0 32 ............................. ACTGGGGCTGGCCGGGCCTGAAGGCGGTCTGG 38164 29 100.0 33 ............................. CCTTTCGCTTCACCTTCTCCTCAAGGGCCTGCC 38226 29 100.0 32 ............................. GTCCACGCGCTGTAGATGATTTTTCTCAACGA 38287 29 100.0 33 ............................. TGGGGCGGGTTGGGCGTCGTCGGTTTCGCCGTC 38349 29 100.0 33 ............................. AGAGGGCGAGCCATCGGCCATCGCTGCCGTAGC 38411 29 100.0 32 ............................. AGGGCGTCGTCTACCTCCCGCCACTCCGGGCT 38472 29 100.0 32 ............................. CTGCCCAAACCTTACCTGAATGTTCCGCCACA 38533 29 100.0 32 ............................. CCGAACCCTGATAGTCCGTCAGCGTGGGACGG 38594 29 100.0 32 ............................. ACCCGAGCGGCTAGGCGGGTTATCCCGATTCC 38655 29 96.6 32 ............................T GGGTGCTGAGTCGCCCGGCCTGTACCTCGACC 38716 29 100.0 32 ............................. CCATCGACTATTCCCCCAGCGCGGCCCTCACG 38777 29 100.0 33 ............................. CTGGCCCGGCTGTATGCTGTAGGGCCCGAACCC 38839 29 100.0 32 ............................. GATTTTGCCGATGAGCATGAGCATAAACCCCT 38900 29 100.0 32 ............................. TCCTCCTCGAGGGCGCGCGCAATGGTCTTGCC 38961 29 100.0 33 ............................. GGCAATCCGGCTCAGTCGGGGTAAGGAGTTGCC 39023 29 100.0 32 ............................. CGGGCGAGGCCGCCGGCGAGATTGACCTTCCC 39084 29 100.0 32 ............................. CGACCTCGTCGGGGGCCCGCTGGATGCTCCGC 39145 29 100.0 32 ............................. GAAGTCCGAGGTATACCGCATCCTAAGGGCCC 39206 29 100.0 32 ............................. AAACCGTCCTCCTCCTCCCGCCGGTGGGCAAG 39267 29 100.0 34 ............................. CTGCGCCTGGCCGTTTTCAGCACCACTCACCACC 39330 29 100.0 32 ............................. TCCCCAGAACGCCTGTTATGAGCGTGGCCCAA 39391 29 100.0 32 ............................. CCTGGTCCTGGCAACCCGCAAGGAGGAGCAGT 39452 29 96.6 32 ............................A GCGACGTGTATCGCATTCTGAGGGCCCACCTA 39513 29 100.0 32 ............................. CCCTGGACCTCATCGCACATCTGGGCGGCCAC 39574 29 100.0 33 ............................. TGCTCGGCTCGAGCGGTCTCGTGCTCGGCTCGA 39636 29 100.0 33 ............................. TATATCGGCCATGGTAGGCATCTCGCCATCGTC 39698 29 100.0 33 ............................. GTCAACGTTCTGCTCGTAGAGCTCCTGCTTCTC 39760 29 100.0 32 ............................. CGCAGCGGCAGCGATGTTGAGACTGGCCACCA 39821 29 100.0 32 ............................. GTTGCGCACCAGATTAACTTCCGGCTGCAACA 39882 29 96.6 32 ............................T CGCTCGCTCGTAAAGCTCTCTAGAGCGAGCGA 39943 29 96.6 32 ............................T TGGGCTACGGGTCCTCAATCGTGCCGGTATGG 40004 29 100.0 32 ............................. GCTGGCCCCCGGCGTGGTGTTTAAGAAGAATA 40065 29 100.0 32 ............................. CCTCAACCGCAACTAGTCAACGAGCCCTCGGC 40126 29 100.0 32 ............................. ACGCTTCCGCCCCCTTTGCCGCGCCTTCGCAT 40187 29 100.0 32 ............................. GCATCCTCATAGCGTAGCCGCACGTGCTCATC 40248 29 100.0 32 ............................. ATTTCCGTCATTTCGCTCCTCCTCTGTTTTGG 40309 29 100.0 33 ............................. GCTTCGATAGTTGGTCTTCTCCCGTTACTTTGC 40371 29 96.6 32 ............................T ATGTCTCTCTGGACGAGCTGTAAACGGGTGAG 40432 29 100.0 33 ............................. GAGACCATCTGGTTCAGCCCGCACTGCCTGGAC 40494 29 96.6 33 ............................T CCTCGCGTCTGCGGTTTTTCTCTCGTCCATGGC 40556 29 100.0 33 ............................. GGTCAGGGGAAATCAACGATAGATGCCGCGTCC 40618 29 96.6 32 ............................T CTCGTTAGCGACCGCCTGCACCCGCGCCGGGA 40679 29 100.0 32 ............................. AATAGGGCGGGGAAAGCACTCCAACCCTGGCT 40740 29 100.0 32 ............................. CCCTCGGCAGCGCTTGGATGGCCGCCAGGTTG 40801 29 96.6 32 ............................T CTACGCCGAGCGGCTGTGGGGCACGCTGGGCA 40862 29 96.6 32 ............................T CTTGCCCCGGCAGACCAGTGCTCGACAAGCTC 40923 29 100.0 32 ............................. CGGTCGGAGGCCGTCGGGGACGCGATTTGGCC 40984 29 100.0 32 ............................. GGGTATTCGCGGCTAGAGAAAAATCAGTTATA 41045 29 100.0 32 ............................. GGCATGGGGCCCCAAACCAACCGCGACCATCC 41106 29 100.0 32 ............................. CGCGTCCCGCATATCGCCCCGGTCGGCCCCGC 41167 29 96.6 32 ............................C TGAGTAGGGCAATAAAGAGAAAACCAGTCCCA 41228 29 100.0 32 ............................. AACCTCCGCCAACATCCCCTCCGCCTGTCCGT 41289 29 96.6 32 ............................T CCGAGGTATACCGCATCCTGAGGGCTCACCTC 41350 29 100.0 32 ............................. CGCTGGACCTGCGGCAACTGGCTACCCAGGCC 41411 29 100.0 32 ............................. CCCTCGGCCGGGCCGACCGGGCCGACAAAGGC 41472 29 96.6 33 ............................A TTGGGCCACGGCCCGGTCGTGCCGAACCAACAC 41534 29 100.0 31 ............................. CCCTCCTGCAAGGGCGGCCGCACGCCTGGCA 41594 29 100.0 32 ............................. CAGCTCTGCAAAGGCCCGACCACGACCCCGGG 41655 29 100.0 32 ............................. AGGGCAGAATCATTGAGCTAATCAACCTAGCC 41716 29 96.6 32 ............................A GTAGCGGTACTCCCTGGCCTGCAACAGCTCGC 41777 29 100.0 32 ............................. TGAAGCGCCAGGGCCTCGAGGCCCGGGTTATA 41838 29 100.0 32 ............................. CCCCCCCATGCCCACACGAAGCCCGGCCTTGT 41899 29 100.0 32 ............................. TCCTGACCGGTAGGCAGGCAGGGGTGCCCAAC 41960 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 78 29 99.3 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GCCCGAGGAGGAAGAGGACGAAGAAGACCCCACCCGTCCCGGAGGGCTTTGGGACCCCGCAGGAGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAAGTGCCGAAGAGTCTTAGGGGAGAGCTGACCCGCTGGCTCCTGGAGGTGGACACTGGGGTATTCGTGGGCCGCCTGAGCGCCACCGTGAGGGAGCTTCTGTGGGAAAAAGTGGTGCAAAAGGCCGGGGAAGGCCGGTGCGCCATGGTCTGGCGTACCAATAACGAGCAAGGCTTTTCCCTTAAGCTCCACAACCACCCGGACCGCACCCTGCAGGACTTTGATGGTATAGTGTTAGTAACTGTGCGCAACGCCGAGGCCATGCAAAAGGCGGAAAAGCTAAAGCGCATGTCCAAGGCCTTGCGCGGGGATCTTGACAAGAAAACCCCGGACTAGTTCCGAAAAAGATACTTAGCGGGGGGTCAGAGGGGATTTTTGCCGTCTGGGTCATGT # Right flank : TGCCCGCTTTGGGAATTTTTTGTAGGGTATTGGGTGTGCTCTACTACCAGTGGCTCGCCTTAGTGTTGTGGTTTGGGCTGGCACTAGCCCACCCCTTTCAGGGTAGCGGGGGATATGTGGAAGGACAGGTGGATTTCGAACCCAACGACGCCCCACCTCGCGCTGGCGTGCCCACCGTGGCTTGGATTGAGTACATCCGCATTGGCGGAAAACACTTCAACCCCCGTGACTGTTTTTGCACCTTGATGTTTTACCAAGGGCAGGTTAGCGCTCGAGTACAGCCCGATGCCCAGATACGAATGCAATTCAACCCCCGCACGGGCCGCGTGGAGGGGGTGGTGCTGTTTCCCAAACCTGGGCCCTACTTCCTAGTGCTGCTTGGCCGCCCCTTGCCCGGCCGGCCGCTGCCGCCTTTTATTATGCAAAGCATCATTCAGGTTCTGCCGCGTTAAACTGTGGGCCCATTCAGGCTGTGCACGGCCCTTCAGGGCATAATAGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171602-170451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSV01000004.1 Meiothermus sp. QL-1 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 171601 37 100.0 37 ..................................... CAGTATACCACATCCAGAGGCCGAGTGCAACTGCTTC 171527 37 100.0 36 ..................................... GACATGGACGATGAGGCCCGCGTTGCTCAGGGCCTG 171454 37 100.0 39 ..................................... TCTAGGCGCCATTATCTGGATGTTATCCGCGTATACATG 171378 37 100.0 37 ..................................... TGGGAATCTGGACCGTGGGTTTCGGCTCCCAAGCCCT 171304 37 100.0 39 ..................................... TCGATGTGGTCGTGAAACCTGACCCATACAGCCTTGGCC 171228 37 100.0 39 ..................................... CTACCAAGTCAAAAAGAGCGACGTCTATCGCATCCTCAG 171152 37 100.0 37 ..................................... GGTCTTGGGCTTGGTCAGCACCGGCTTCCCCCCAGTT 171078 37 100.0 37 ..................................... GCCCAGCGGGCCGGAAGGTGGCTGACAGCCCTCCGTA 171004 37 100.0 37 ..................................... CCACTACGTCCGTGTCCAGGCCCGCGAGAATGGCCTC 170930 37 100.0 37 ..................................... ACGATACACCCCCAGGGTGATGTTTGGGTTACTGTGA 170856 37 100.0 36 ..................................... GCAGTGCTTTTCGCACTGCCCGCAGCGGGTGCAGAC 170783 37 100.0 38 ..................................... AAAGAGTCGTGGCCGGTAAGCAGCCCTGCAAAGGCCCG 170708 37 100.0 36 ..................................... CCGCTCCGCCAGGTAGTGCTCCAGGGATTCGATGTC 170635 37 100.0 36 ..................................... CCTCCGCGGTAGCTCCACCGGTTGTGGGGGTGCTAC 170562 37 97.3 38 ..............T...................... TACGGGGAGGGTACGGCAGTCGGAAGGGACGCGATAGC 170487 37 91.9 0 .......G......T....................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 99.3 37 GTCGCACTCGGGCTCCGGCCCGAGTGAGGATTGAAAC # Left flank : CCGTGGAACGGCTGGATATCTTGGTGACCTACGATGTGAACGTGACCTCGGAGGACGGACAGACCCGCCTGGCTCGGGTGGCCAGGATCTGCAAAAACTACGGGCAGCGGGTGCAGATGTCCGTGTTTGAGTGCCGGGTGACGCGAGCCCAACTGGAGGAGCTCGAGGCCAAGTTGCTTAAGGTCATTGACCTGGATAAGGACAGCCTCCGGATTTATATCCTCCCCGGAGGCAGAGAGAAGAATCTGCGTGTCCATGGTCAGGACAGGTATACCGACTTTGATGACCCCTTGGTAATCTAAACGTAGCCGCTCCATTTGCGCGGACCCAAAGTGGGTGGCAAAACCCGGGGGGGTTCGCGCAAGCGCAGAAAGCGGCTAGGGGAGCTTGAAAATCCGCTTTCGCTTCACCCCACCCCCCTATCTCCCCCGGGGCCTTTTGGGGGGGTTCGCGCAAAAGGCCCCTTGAGCCCTGTCCAGCACGTGCGCTAAACTGAGGCC # Right flank : CTGAGCCGCGGCTGCCCAAGCCGCGGTCTTGACCGTTGCACTCTGGCTTCAGCTCGAGTAGGGAACTACCAAAGACGCATGCCGGGAACGGGCTTCATATTGGTGAATAGCTCGAAGAGTACTGGACCATACGCCAAAACCACCAGCAGCACTGCTAACCCAAACCAAAAGCCAACGCGCTCGGTTAGGCGCACCAAGCCGCTGCCCTCGGGTTTGGAAATCACCTCAGTAAAGGGCACCTCGGCCATTACCTTGCTGGGCTCACGACGGCTTTGTAGGGCCGTGGCAAATATCACGTAGAAGAATAGAACCGCTGCTACCAGGAGGATTATTCCAGAAACGATGTTAAGCACCATCCAGGGCGCGCTTTCCTTGTAGGCTTCCATGGCCAGGGGACTAGCGGCGATGTGCGAGCGCCTTGGTATGGCGTACAAAAAGCCCATCCAGTGCAGGGCAAAGGTCATTATGAACATTCCGATGAACCACAGCCACTGCGAGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCTCCGGCCCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.60,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //