Array 1 575029-570115 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704550.1 Xenorhabdus doucetiae strain FRM16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 575028 29 100.0 32 ............................. ATATTCTGTCACCAAAAATGAACGCGCTTTTC 574967 29 100.0 32 ............................. GTATTTGTCTGGATATCGATTCCCCCGGTGGT 574906 29 100.0 32 ............................. TGGCAGGCGTCATCAGTCAGGGCGTGGATTAC 574845 29 100.0 32 ............................. AAATCAACAGTTTCTAATATCCACTTTTTCTA 574784 29 100.0 32 ............................. TACTCACTAACCTCTGAGTTGGCACGTAGCCA 574723 29 100.0 32 ............................. AATCACTTTAACCAACAACGTAATGGCTGGTC 574662 29 100.0 32 ............................. AATATGTTGGTGCCATTGTACTGGAGGTCGAT 574601 29 100.0 32 ............................. CAGGATTCCAACGCTGACTTTGTGTCTTATGT 574540 29 100.0 32 ............................. GGGACGTAGTGCTGATGCAGGTTCAGGCCGAT 574479 29 100.0 32 ............................. GATAATTCGGATATCGTGGGTTATCGTGTTGA 574418 29 100.0 32 ............................. CCTTGATCACAGTGAACAGGGGGGATAATGCA 574357 29 100.0 32 ............................. TAATATGTCGGAAAATATACAACAAGACAATG 574296 29 100.0 32 ............................. AGGGTTTGAATGAAACGATTAATGAACAATGA 574235 29 100.0 33 ............................. TGAGCATATTTATTGACCATCTCCAGCTTCTCC 574173 29 100.0 33 ............................. TATGTTCATTCTAACCAGTTCTAACTTGGCTTC 574111 29 100.0 32 ............................. GCGCGGATATGGCGGTAAGAATGTACATGGAG 574050 29 100.0 32 ............................. ATAGTATGAATGATCCAGGTCTAGCCGATATA 573989 29 100.0 32 ............................. AGTTGATAAGCTGCGTGATTTATTATCATGGC 573928 29 100.0 32 ............................. TCTGCGTTTACTGGGCGTTTATTGATACGTTT 573867 29 100.0 32 ............................. ACGATAAAACTCTCCCTCTGCATCTCTTGCTG 573806 29 100.0 32 ............................. CGTCAGTTGGATGCGCTGATTAAGGCGCTGGA 573745 29 100.0 33 ............................. CTGCGTGATTTATTATCATGGCAATCTGCAACA 573683 29 100.0 32 ............................. TGGGTGTTCGTCCATACCAAGCCATCAACCAA 573622 29 100.0 32 ............................. GCATTCATGTATCGCTTCCCGCGCCTACTCAG 573561 29 100.0 32 ............................. ACACACATGGGCTAGCTGGTTGGTACAAGCTG 573500 29 100.0 32 ............................. TTCTCCGAGGAGACGTACATAATCCTGTTCAG 573439 29 100.0 32 ............................. TAACTTTTACTATCACTGGCGCTCCGACTTTT 573378 29 100.0 32 ............................. CTGCGTGATTTATTATCATGGCAATCTGCAAC 573317 29 100.0 32 ............................. GCTCAGCGTTACCGGTTGGTGTACCCGTCCCG 573256 29 100.0 32 ............................. GTTTCCTAAGTAGAATATTGCACTACTTAATC 573195 29 100.0 32 ............................. TAACACCACCATGAACCACCAGTTATGTTTAT 573134 29 100.0 32 ............................. CACTGGACATTAATCCTATCAATGATTTTGAC 573073 29 100.0 32 ............................. CTCATCATTGGATAGTGGACGTTAAAAGCACG 573012 29 100.0 32 ............................. TATTCGCTGAGGTTATGTCTCAGGGGGTTGCA 572951 29 100.0 32 ............................. ACATTATCGCCCACGCGAAAGCGGAAGGGGTG 572890 29 100.0 32 ............................. GGATCAATAAACCGGATGAAGCAGTGGAGAGT 572829 29 100.0 32 ............................. GACCCAAAAAATAACTAAGTGTTATTATCACT 572768 29 100.0 32 ............................. TTACATTGGTTTAGGTTAGCCATTCACTGCCT 572707 29 100.0 32 ............................. ACATTGCCAGGTGTATTAACCGGGGGCATTAA 572646 29 100.0 32 ............................. CCCAGCGACGGATACTGGAGGCGTCAGAAATT 572585 29 100.0 32 ............................. TCCCCTTAGTTAAATGGATACAGAGATATAAA 572524 29 100.0 32 ............................. GCAGTCTTGGTATTGAAGGGGCAAATCAGTAT 572463 29 100.0 32 ............................. CCGAGTCAGTTTTTGCAAAGTGATGGTATCCG 572402 29 100.0 32 ............................. CAAAATTACGGGTTGATACTCGTAAGTGGTTC 572341 29 100.0 32 ............................. TCAATGCGACAAACTACTATGCTCACTGGCAT 572280 29 100.0 32 ............................. CATTCTATGTGTTCGTGGTTTAGATAATCATT 572219 29 100.0 32 ............................. TGAACGAACGGATAGCAACTAAAAACAAGGGA 572158 29 100.0 32 ............................. CCAGATGAGTTTGTGGTAGACGAGGATTCTGT 572097 29 100.0 32 ............................. CAAATCCCCGAACTGCGCAACCCGCGCTATTA 572036 29 100.0 32 ............................. CATTCTATGTGTTCGTGGTTTAGATAATCATT 571975 29 100.0 32 ............................. TTAAAACAACGATTTAAATCAACTATAGAGGA 571914 29 100.0 32 ............................. GTATTAGTAATTTCTTCTTTTACCTGTTCAAC 571853 29 100.0 33 ............................. ATTGGCAGCGATTTGTAGCATATGCCGGGCTGG 571791 29 100.0 32 ............................. ATATCAGCGTGGAGGATGCTATAGCTGAAGGG 571730 29 100.0 32 ............................. CGTATTCAAATATTTTGTACGCAACGGCACAT 571669 29 100.0 32 ............................. GGCTATATGTTTCTGTACCGTGCATTGTTCAG 571608 29 100.0 32 ............................. CATTCGTGGAAACAATATGCGATTTAATTTCC 571547 29 100.0 32 ............................. TATTGGATTTGGTGGTGCTGGGTACCACGGTG 571486 29 100.0 32 ............................. GTTCACCAGGGGCCAACCGTCCTACGGCATCA 571425 29 100.0 32 ............................. CATCTATTTATTTCCTATTAAATTTTGTACGA 571364 29 100.0 32 ............................. GCTTCTGCGTGTTTCTGGTTAATGATATCCAC 571303 29 100.0 32 ............................. AAGGAATGGGAGAATGGCAAATTTACGGAAAG 571242 29 100.0 33 ............................. TTATCAAAACCTGCCAAATTTTAAGCATTTTAA 571180 29 100.0 32 ............................. ATCATCATGGAAAACTACCCACTGGCTCTATT 571119 29 100.0 32 ............................. TATTCAACATTAAAACAAATAGCTGACTTTTT 571058 29 100.0 32 ............................. TGATTCTTACCGTAATCAGAGAATTGCATCCC 570997 29 100.0 32 ............................. TATGGGTATCGCCAGAGCAGAATATTTGAAAT 570936 29 100.0 31 ............................. GAATATAAAGACTCGATTCAATAATTACAAA 570876 29 100.0 32 ............................. ACGTGCCGTTCGGTAATGCCGGCATCGGTTAT 570815 29 100.0 32 ............................. GCATTATCAGTACTCAAAATCGCCATTATTCC 570754 29 100.0 32 ............................. TCCACTTTGACATTAGTCGAGCTAACAGTAGG 570693 29 100.0 32 ............................. GAAACGGCCGCAGAGCGTTATGCCATTGAGAA 570632 29 100.0 33 ............................. CCATTACTGACCAGTTTATAACTCGGCCTATGA 570570 29 100.0 32 ............................. CCGAGTATCAGCAAAAGCTCAAGGCGTTGAGG 570509 29 100.0 32 ............................. CGCTTACTGATGATAGCGGCGGTCTCTCTCGG 570448 29 100.0 32 ............................. AAACGCGACCGTCTAATGCGTCCGCCTACTCC 570387 29 100.0 32 ............................. GTACGGGCAGCGGCGGATATCGGCGACTTTGA 570326 29 100.0 32 ............................. CGATAATTAACTTATGGTTAAAAACACTAATA 570265 29 96.6 32 .......................G..... TATCTATAGTTTTCTCGCTTGGTGAAGTGGAG 570204 29 93.1 32 A..........A................. GCGCTTGAAGGTGGACGTTATAAAGTGGATGT 570143 29 86.2 0 A..........A..CA............. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 99.7 32 GTGTTCCCCGTGAGTGCGGGGATAAACCG # Left flank : AACTCAGTTGATCCACCGCTTCCGCTATTCGTTTTCCCAATGCCTCAGAAACCTGATCGGGATGACGTAAAAAACGGCTGACCGTCATTTTGGTGACCCCAACGAGGTCTGCAACATCTTGTAAAGCTGGGCGTTTTTTCTTCATTTTTAATGTAATACGATCAGTTATTGATAGGCACAAATGAATAACCTGCGGTTTTAACACATTTATACCTCATTACAACACGCTTTTGAGTGAAAAATGCCAATATACTCGCATCTTATTGATCAGCAAGGTCTGAAATTGTGATGAGTCACACGCGCCTGTCACTAACTCTGTGCCTTTGCTGCGCTCTCCTTTTATTCCTGCAACATTTTGTTGGTCTGGTCGATATGGATCAAATGTGACCTGCGTTACAAAGGCTAATTCGAGAAAAAAATTTGCCTGATTTATAGGCGGAAAAGATGGTAGAATTTTTTCGCCCTAAAAAGGGGTTGTAAAACAGTGGGATAAAATTGGT # Right flank : TCATTATTGCAGTTTTGGCAGATAAAAATAACCTAAAAGAAGAAAAAACATTGTGAAATTATTACAAGGCGGTCATAAAAATAACCAGCAGAATTTAGATTCTGATGCAATAGGATTTTTATTACTGTCCGCCCATATAATTTTAAATGTGATCAATATTCCATATAAAACATTACCCTAATGAAGAAATGGTAGAAAATCGGGTAAATTATCCAAATCTGTTGTTAATGCAAATGATTTAACTGACTTTTTACATGATCCGCTATTTTAAAATAATATAATCACATAAGGAAACATCTTGGGCACTCACACCACAACAGAAATAACATACTGGAATCGCATGGTGCCGGAACTGACTGTGACCGATTTTTCTGTTTCGCTCAATTTCTATCAAAAAATATTAGGGTTCGAAGTATTAATCCAGCGAGAAGATCCTGACTTTGCCTATTTAAGTTTAGGGGAGGCGCAATTAATGCTGGAGGCATTTCATGATGAAGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2323035-2326830 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO704550.1 Xenorhabdus doucetiae strain FRM16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2323035 29 100.0 34 ............................. CATGAAACCATCAGTTGCAGCTATTTTACCGTCC 2323098 29 100.0 32 ............................. GCTCGGGCTGATACGGGCTATGACGTACTGGA 2323159 29 100.0 32 ............................. GCTGAGGACGCTCTCTCCATTGGCATACCTGT 2323220 29 100.0 32 ............................. AGTTAGGGTTTTAAGGGAAGCGGGATTAATTA 2323281 29 100.0 32 ............................. ATATCAGCGTGGAGGATGCTATAGCTGAAGGG 2323342 29 100.0 32 ............................. CCCGCCTTCCAGCCATGACAAATAGCCGAGAC 2323403 29 100.0 32 ............................. AAATGGCAATGGCGGAGGCGGAGATATGGAAT 2323464 29 100.0 32 ............................. AAGATAGTCAAAATCTGTAAAGTTACAAACAA 2323525 29 100.0 32 ............................. TTCTCCGAGGAGACGTACATAATCCTGTTCAG 2323586 29 100.0 32 ............................. AAACCCTGAACGGACTCAAGAACAGGTTGGGG 2323647 29 100.0 33 ............................. ACCCCGCCCGTCCGCTGAATACGTTGTCACTGA 2323709 29 100.0 32 ............................. GCTCGGGCTGATACGGGCTATGACGTACTGGA 2323770 29 100.0 32 ............................. CTGAGTTGTTAAGCAACCCTGCGAAGCTGCGT 2323831 29 100.0 32 ............................. GTGAGCTTCCCATGAAGAAATCATGGAACGGC 2323892 29 100.0 32 ............................. CGGTTCTGTCGGTTTGAGTCTGCCGAATATGG 2323953 29 100.0 32 ............................. ATGTAGATGATTCGATAAATAGTAAGCAATAC 2324014 29 100.0 33 ............................. ACAAATCATATCTCGCATTTTCCCATCTGCGGC 2324076 29 100.0 32 ............................. AGCTGACGTCAGGGTGTTTTTCCCTTTTATTC 2324137 29 100.0 32 ............................. GCTCAGCGTTACCGGTTGGTGTACCCGTCCCG 2324198 29 100.0 32 ............................. GTGGACGAGAAACAAAAGTATTCATTCCTCGA 2324259 29 100.0 32 ............................. AAAATTGCAACACGGAGCTGATAAAATTTCCT 2324320 29 100.0 32 ............................. TATGGAAATGGCAAATACTTTTCTACAACTGA 2324381 29 100.0 32 ............................. AATACATAGCTCGAGGAAAGGCAGGGAAAAAA 2324442 29 100.0 33 ............................. GTGTTAATCATGCCAGCACGTATCTAATCATCA 2324504 29 100.0 32 ............................. TATTTAGAGGTTAAATCATGACTGGGTTTGTT 2324565 29 100.0 32 ............................. GATACTAACGGTGAAATTAGCAACTTGAAGTT 2324626 29 100.0 32 ............................. CAATTTGTCAGCCTATCTCTGATCTCACTGAT 2324687 29 100.0 32 ............................. CCGTTTATAAATGGTTGCATGGTAAATCTAGG 2324748 29 100.0 32 ............................. CTATCGGTGCGGAGAGAACAGAACGACGAGAT 2324809 29 100.0 32 ............................. AAATGGCAATGGCGGAGGCGGAGATATGGAAT 2324870 29 100.0 32 ............................. GGCATGAGCGCGACCACTGCGAGAGTGTGGTT 2324931 29 100.0 32 ............................. TGGGTGCAATCCTCAATGGTGAATCTGAGATT 2324992 29 100.0 32 ............................. CACTCCGTTACCAGATGCTCAAATAGAGGCTG 2325053 29 100.0 32 ............................. AACGCAATAAATTCTGGAATAACTGCGAACCA 2325114 29 100.0 32 ............................. ATTTGGCCGCCGCTACGAATTAGAGGTTCGTG 2325175 29 100.0 32 ............................. CGTCATGATCCAGTTCTCGCAGGCTATGGCTT 2325236 29 100.0 32 ............................. GATGCCAACGGTCAATGGATTGATCACACCAC 2325297 29 100.0 33 ............................. GGAAAATTCCCACAAGCGTAACATCATTCAAAA 2325359 29 100.0 32 ............................. GCTCTCGGAACGTAGCCAGAATAATTGGCGTA 2325420 29 100.0 32 ............................. CAGTGGGTTGATGAAATAAATTTAGCGATCAC 2325481 29 100.0 32 ............................. TTTTCAGAGAGAGTTTCAGGCTTTCTTTCCTA 2325542 29 100.0 33 ............................. GGAATTAGGCGTTGAAACACCAGATGTCATTGA 2325604 29 100.0 32 ............................. CTTGATATCACCAGTTTCTAAACGTTCTTCCT 2325665 29 100.0 32 ............................. CTTGATATCACCAGTTTCTAAACGTTCTTCCT 2325726 29 100.0 32 ............................. GCCAGAGATTACACGGAACTGGATACGAAGTA 2325787 29 100.0 32 ............................. ACTAATCACGGTGGTAATGAGCGCGGCACATG 2325848 29 100.0 32 ............................. TACCACTCTTTAGGAGACAATGAGCAGGAAGC 2325909 29 100.0 32 ............................. AGGATTACTGGATGAATGGAAAACGCATCAAC 2325970 29 100.0 32 ............................. GCACCTCCTCCCGTGGCATCCCGGCCAAACTG 2326031 29 100.0 32 ............................. CCTATTCCGTTGGAAACTTTCAGTACAACAAA 2326092 29 100.0 33 ............................. TTGGCTGAAACGTTGGTGAATGGTTTTTCAGAC 2326154 29 100.0 32 ............................. CCTTGTCTGCCTTTATGAACCGTTACCATGAG 2326215 29 100.0 33 ............................. ACTTCATATCCATAATGCTACGGTACGGAGGGC 2326277 29 89.7 7 ........................TT.A. CGGTGAA Deletion [2326313] 2326313 29 100.0 32 ............................. CTGTGCTCATATTCTCTGCTCCTCCACTGCCC 2326374 29 100.0 32 ............................. TCACTCACCTTCAATAAAATCAATACGAGGTT 2326435 29 96.6 32 ............G................ TGTGAGTTATCCGGCAATTTACCGATGCGTTT 2326496 29 93.1 33 ............G...............A GGAAATTTGATAAGTTGGTTGTTCCACAGTCAA 2326558 29 96.6 32 ............G................ GATCAATAAACCGATTTCGGTTCGGTGTCCAC 2326619 29 93.1 32 ...........AG................ GCTATAGAGGACACGATCATTGCGCGTAAATT 2326680 29 93.1 32 ...........AG................ CATCGGCGTGGTTGTTTCGGGATCTTTATACA 2326741 29 93.1 32 ...........AG................ CCGTTATTTTTAGACACCGAAACCACGGGACT 2326802 29 72.4 0 .........A.AT.C.........GCGA. | ========== ====== ====== ====== ============================= ================================== ================== 63 29 98.9 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : ATGATTGGTTGCCTTCGGTATTTCAGGCGCTTGGGGATTGTTCAATAAAACAGTGGGAATTTTTAACGTTGGATATGCCGCAATGGCTGATTGGCATTTTTGCCGCTTATCTGTTAGTCGGCATATTAGTGCTGGTGAGCCAGTTTTTTCGGGTTCAGCGTAGATTTTAAGAATAAAAAACTCACCTTTTATAAGGAGCCTGCTAAAGGCTCCTTTAATGCCTTTCCATATTCAGTCTAACTCTTCTCACAATAATAAAATATGCCCTTTTTTATGCGACCTGACGCTCAGATGCCAGCAGGTAATGATTGGCACTACTGTGTGATGGAGATCCCATAATTTGATAGATAAAAATGAAGGATATGAATGAAATGCGATCTGCATTACAGATAATAAATCAGGAAAGATGAACAGAAGAATTTCACTGATTTATAGGCTGAAAAAATGGTAGAATTTTTTCGCCCTAAAAAGGGTTTATAAAACAGTTGGATAAAATTAGA # Right flank : GTTGAACATGGTCCAGTCTTAGCAAGGTCATAATGAATCCTCTTTCATCAGGTCACTATCTTATGTTTAACAAATTTAATTTTTTACAAAGATACCGTTTTTGCCCTTTTCACTATTTTGGCCTACCCAAGTCATTCCTTATTACTAAAAAATTCTGTAATTTAGTTATTAATTAGATAACAATTACGTAACAATAAATGTTTTCAGGTCGTGGGTGAATGTTTTCCAAATCAAATATCTCAATCAGTGCATTACTGGTTTCTTCTCTGCTTTTGACCATAGGGCGTGGAGCCACCCTGCCCTTTATGGCTATCTACCTGACTCGTCAGTATCAGATGCCGGTTAATAAGGTTGGGCTGGCTATCTCTGTTGCTTTAACTATTGGCGTACTTTTCAGTATGGGGTTTGGGATTCTGGCGGATAAATTCGATAAAAGACGCTATATGTTATTGGCCGTTATGGCGTTTATCTGTGGTTTTATTGCCATTCCCCTGATCAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //