Array 1 138583-138915 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBG010000039.1 Salmonella enterica isolate 2742_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138583 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 138644 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 138705 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 138766 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 138827 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 138888 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12361-14344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBG010000012.1 Salmonella enterica isolate 2742_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12361 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 12422 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 12483 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 12544 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 12605 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 12666 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 12727 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 12788 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGGCACCAAA 12849 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 12910 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 12971 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 13032 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 13093 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 13154 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 13215 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 13277 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 13338 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 13399 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 13460 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 13521 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 13582 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 13643 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 13704 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 13765 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 13826 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 13887 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 13948 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 14009 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 14071 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 14132 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 14193 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 14254 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACATCTCTAAAAA 14315 29 96.6 0 ............T................ | A [14342] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAAGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGAATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGGTTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //