Array 1 80523-79396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEUF010000004.1 Xenorhabdus griffiniae strain VH1 Xg_VH1_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80522 29 100.0 32 ............................. CCTAATTCCTTCCAAATTTAACAATTCAATAA 80461 29 100.0 32 ............................. AAATTTATTTAATGTAGTTGAAGCAATCAAAA 80400 29 100.0 32 ............................. GACAATTACTTTCGCTCAATGCAACCGAATCC 80339 29 100.0 32 ............................. ATATTAGGCAAACCATCGTTATCCGATGATTT 80278 29 100.0 32 ............................. AAATTAGATTCGTCTTTTGTCCATGTTTGAAC 80217 29 100.0 32 ............................. CCATCCACATCTCATCCACTTTATAGCTGAAA 80156 29 100.0 32 ............................. TTCTTAGGGTTACTGGACAGCGCCTGCACCTT 80095 29 100.0 32 ............................. CCATCGCGTCTGGCAATGCTGACCAGTTCGCA 80034 29 100.0 32 ............................. AATAATATTCATATAGTCTCCTTATCATATGA 79973 29 100.0 32 ............................. GTTATCTAATTCTGACCGCGCTGGAATATTTT 79912 29 100.0 32 ............................. TCTGATTCAAGTTTTTCTACGCGTGATTCCAT 79851 29 100.0 32 ............................. TCATAACCGCTGCCATAGCTTCTGTTTTTGGC 79790 29 100.0 32 ............................. CGTTTAAAAAAAAGGAAATCACTTTTACCTAG 79729 29 100.0 32 ............................. CACTTAACGTTATTACAGATGCACAGGAGTAA 79668 29 100.0 32 ............................. GGTGCGCAGTTGGTGACAGAGGGCAAACTTCT 79607 29 96.6 32 .................A........... GATATTCTGACCTTTGTTATTTACTTTAGCAG 79546 29 100.0 32 ............................. AAAAAATATTATCAGCAATTGGTGATACTGAA 79485 29 100.0 32 ............................. TTTTTCTCGCGATTAGGCTGTGTCTTGGCTTT 79424 29 82.8 0 ........................CGGTA | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : TATAGCGCATGGCAAGGATTACAACTGGCATGGCATCACACCATGATACAGTTATACCCTTCTCCGTTTAATACTTGTGACTTTTTTGTCCAATTTCCATCTTGGTTACCATTGAATGACTGGTTACCCTCATTTTTTCAAGCGCTTGGGGATTGTTCAATAAAACAGTGGGAATTTTTAACACTGGATATGCCGCAATGGCTGATTGGTATTTTTGCCGCTTACCTGCTGGTGAGTATATTGGTGTTAGTGAGCCAGTTTTTTCGAAATCAGGATAGATCTTAAGAGTAAAAAATTGCCCCAAAAGGAGTCTCTAAAGGCTCCTTTTAACCTACCTTCCCTATATTCAATTCTCTATCACAATAATAAAAACGCGATCTGCTTTGCAGATTATAAATCAGAAAAAATGGAAAGATGAATTTTACTGATTTATAGGCTGAAAAAATGGTAGACTTTTTAAGTCGGAAAAATATTTTATAAAACAGTTAGATAAAATTAGG # Right flank : CGTTGTTCTACGATGAGTTGCTGGGCATTGCGCAGTGCCTTAATATCTTGTTGTTCTACCGTCTTGACTGGAACAAAATGGATGTCAGGTCGGCAGGCCATTTCGCAGATAGCCAGTGCATCCTTGGCATCATTTTTTTGATGATGACTGAAAGCCTTGACATGCTGGGTCGGCACAAGCCTGATGACAAATCCCACCATCGCCTGAAGGGTTCTACCCCAATAGTGAGAAGTGGCACAGGATCGTATTCATGAGATGTTCTCCCGCAATTCAGTGCATCGGAAAGAAAGATGACACTGTTTGCCGCTGAAAAAGGGGACGTCCATCACATCACTACAATCCCCGTACTCACGGGGAACACGCCGTGGGAAAATGGCGCTTATCTGGCTCGCTGGGAACAATTGACGGCTAAAGGGAAGACCCAGCGCTTGGGCTGGGATCTTTGAAGTCAAAGCCATCTAAAACGATATGCCAACCAAATTATTGCACCACCTCCTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27188-28923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEUF010000006.1 Xenorhabdus griffiniae strain VH1 Xg_VH1_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27188 29 100.0 32 ............................. AACGTGCACGCAAGGCCGCTGAACGTGATGCA 27249 29 100.0 32 ............................. AACAAGTGGAGGAATGACATCATGACAGCAAA 27310 29 100.0 32 ............................. GCAAAGATTTAAATAGCGAAGATTTCAGAAGA 27371 29 100.0 32 ............................. CTATTTAGATGCCGAAGAGATCTCAGCCAGCA 27432 29 100.0 32 ............................. AAATTCAGGGTCGTTATTATTGGCCTAATGAA 27493 29 100.0 32 ............................. CTGTAGCCCGCCTCGCAGCGCGTATCGACGCC 27554 29 100.0 32 ............................. CTACCGGGGTAACAGCGATAGCATTGCCAGCA 27615 29 96.6 31 ............................T TTAGTGAATTCACGGCAGCAGAAATCCGCTC 27675 29 100.0 32 ............................. TTCGGGTGAGCGGCTTTAAACCACAGATTGAC 27736 29 100.0 32 ............................. AGTTGATCCGCTTTGAACCCTACACCCTAAGT 27797 29 100.0 32 ............................. AGATATGCAGGACGCCGTTCGGGGTTTTAGGC 27858 29 100.0 32 ............................. CCGTTCATATATGCCTCTATTATTAAAAAACG 27919 29 100.0 32 ............................. CCAATCAGATTAAGCTTATTCAAAATCCATTT 27980 29 100.0 32 ............................. ATATGCCGCGTTGGTATCTGATGGAAGAATTG 28041 29 100.0 32 ............................. GTTATTATATCCAAAGGTTATCACATGGGGCG 28102 29 100.0 32 ............................. GGTGTTTCTTTTTCCTACACTCAGGGCGACGG 28163 29 100.0 32 ............................. TTTCTCAATCTGTAATGACATATCGATGTGAT 28224 29 100.0 32 ............................. TTAGTTTGTCAGATATCGGTCGGGCTAATTCC 28285 29 100.0 32 ............................. GCAACTACATTCAGTTCGATGGCAAAACATGG 28346 29 100.0 32 ............................. GCAACTACATTCAGTTCGATGGCAAAACATGG 28407 29 100.0 32 ............................. TATAGAACTCGCCGCTGGATGTGGTTGTTGTA 28468 29 100.0 32 ............................. ATAATCTGTGTAAAGCCAAAGTGATCACAAAT 28529 29 100.0 32 ............................. AAAGTACCGGAAGCCGCAGCGCAAAGGAGCGA 28590 29 100.0 32 ............................. TTTATGTACTCCACCTTGTTCAAACGGTTCCA 28651 29 100.0 32 ............................. TCTGATCTTGCTGTTATCAAATCAAACTATGC 28712 29 100.0 32 ............................. CTACTGGCTATTAGAAGTTGATGACCAAGATA 28773 29 100.0 32 ............................. CCATGAACGATAATGCCTACGATACATCAAAC 28834 29 96.6 32 ...........A................. CCCTGTCCGCATGGACATACGGAGCGATTTGT 28895 29 86.2 0 .............A......A......AC | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : ACCCCAACGAGGTCGGCAACATCTTGTAAAGCTGGGCGTTTTTTCTTCATTTTCAATGTAATACAATCAGTTATTGATAGGTGCAGAGGAATAACTTGCGGTTTTAACATATTTATACATCATTACAACACGCTTTCTGGTGAAAAATGCCAATATACTCGCATCTTGTTTAGCAGTAATTACTGAAATTGTGATGACTTACACGCGTTTGAGTGAATATTCCAATCTGTTGCTAACATCCCCACCGCACAACACAATAGTTTTCATAACTCTTACTCTCTTTGTTGTTGAGTTAAGGCCAACAGGTTCTTTTGCGATTTCTGCAATAGGAATCTCATAAGTTGGTAAATAAGAGTTAAGAATATGAATTAAATGCGATCTACATTACAGATGGTAAATCAGAAAAATGAACGGGAAAATTTGGCTAACTTTATAGGCTAAAAAATGGTAGAATTTTTCGGCCCTAAAAAGATTTTATAAAACAGATAGATAAAATTAGG # Right flank : CTTACTTGGATAACAAAATCATACACTTTAGAGACTTGAAAATATAATTGGCGCAAAAAGTCACTAAAAGCACTACTGGCTTCAAATCCCATTAAAACTATAAACAAACTTCAACAAGAAATTAGATACCTGAAACGAAAAGCAACCTATCAAGATAAGACATTATCAGATAATTCCACTCAGAAATTATTACAGGATAACCATAAAGAGAATCATCAAAATTTAGCTCATTATGATGCTATAGGATTTCCATCACTAACGGTTCACATAATCCTGAATGTGATCAATATTCCATATAAGATAAAATGTTAGTGATAACATAATATAAAATAGGTTAAATTCTCCAAATCCGTTGTTAATGCAGTGGATTTAACTAATTTTTTAAGTAGCTCGCTATTTTAAAAAATATAATCACCCAGGAAAACACTTTGAACGCTAATAATGCAACAGAAATAACTTACTGGAATCGTATGGTACCAGAACTTACCGTGACCAATTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12460-12978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEUF010000069.1 Xenorhabdus griffiniae strain VH1 Xg_VH1_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12460 29 96.6 32 ............................C ACAATCGTGCCATCACTGACCGCTGCATGTGT 12521 29 100.0 33 ............................. TAATTTTTAATAAAAAAGGACTTTTTCACTGGT 12583 29 96.6 32 ............................T GTCAGTAGAAATTTCTTTTTAGTACCTAAAGA 12644 29 96.6 32 .A........................... GGCAGTCTGCCCGCGTTGCTCTGGCAACACCG 12705 29 100.0 32 ............................. ATAATGGCGACCGGGTGCCAACGTCAGTTGAA 12766 29 100.0 32 ............................. TGATCCATTCTTCGGGTGATGGTTGAACCAGC 12827 29 100.0 32 ............................. ATCTGGCGTTAGCCTCAGACGATTTTGCGCTA 12888 29 93.1 32 .C.........G................. AGGGCGCCATTGCGCATTGGTTTGATGAAAGA 12949 29 89.7 0 .C.........G...........A..... | A [12972] ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.0 32 CTGTTCCCCATATGTATGGGGATGAACCG # Left flank : CGTACTGGCGTGCCAGCAAATTGGTATTCCTATCATTCCTGGCGTGAATAACGCCAGCACGATTGAACAAGCGCTGGAATCAGGCATCAATTTTGTCAAATTCTTCCCGGCTGAGCCTTCAGGTGGCATTGCGATGATTAAAGCACTACTTGCACCGTACCCACAGTTGCAAGTCATGCCAACCGGTGGGATCAACGTGAAGAATATTCGCGATTATCTTGCTATCCCACAAATTGTGGCATGTGGTGGATCATGGATGGTCAGCCCACAGTTGATTCGAGATAAGGACTGGAAGGCGGTTGGTAGATTGGTGAGGGAGGCGGTGGAGTTGGTTAACGCTTGCTGAGGGAATATCCATTTCACAATAGATAACTTTTTATGACTTAACATCATGAAACATCAGTGTTTTTATATTTGATAAAATGAAGTTTTTAAGTAAAAAACGTGGTGGGATTTTTTCTATTAAAAAAGTTCTTTAAAAACATAATAATAGAGTTGGA # Right flank : GTACGGGTGGCAAATCCACCTTGCTGGGTATTAGCAAACGAAGCGATAAAAATTTGCGTAGGTTACCCTGATCCCGTTCGCCCGCGCGTTCATGATGCGGCTTGAATATCCAGAAGAGCAAACTTGCTGAGTGGGTTCGTAAACAACTGGGTAAAAAGCATGCGAATGTGGTTGCCTGTGCTTTATCAGGCGCGGAACTCATCGTGGCACAGGCATCCTTACACATAGAGACGCCGGATTGAAGCAAGCCCATCATAGGGCAAAAATCAGTGTTACAAAAATAGGGATGACCATAGATTCTATTGCACTTTATTTTCCGTTTCCTGAGACGAACCAATGAATGCGGTTTCCCTGGTGTAATCAAAAATAGTGATTATTTAAAAAAATAAGGTAATGTTTTGATAATTGTAAAAATTTATTTTTTTGCAGATGTATTAATGTTAAATTTAAATACTTGGCCTAACAAAGAGTAAAAAATACTCATATTAAAATATAAGGAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCATATGTATGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCATATGTATGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //