Array 1 100369-101495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLR010000012.1 Escherichia coli strain Pk8589 NODE_12_length_118442_cov_120.199932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100369 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 100430 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 100491 29 96.6 32 ............T................ GAACTTGATCTGATTTGTGAATTTATTCGATC 100552 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 100613 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 100674 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 100735 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 100796 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 100857 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 100918 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 100979 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 101040 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 101101 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 101162 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 101223 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 101284 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 101345 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 101406 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 101467 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40370-39426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLR010000030.1 Escherichia coli strain Pk8589 NODE_30_length_49281_cov_116.793492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40369 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 40308 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 40247 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 40186 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 40125 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 40064 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 40003 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 39942 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39881 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39820 29 100.0 32 ............................. GGATCTAACGCGCTGTCAAAATTCCGTGCTTT 39759 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39698 29 96.6 32 A............................ CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39637 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 39576 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 39515 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39454 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45849-46718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLR010000015.1 Escherichia coli strain Pk8589 NODE_15_length_111574_cov_114.054845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45849 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 45909 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 45969 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 46029 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 46089 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 46149 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 46209 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 46269 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 46329 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 46389 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 46449 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 46509 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 46569 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 46629 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 46689 28 85.7 0 ....................A...C.CT | T,C [46709,46713] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52055-53103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLR010000015.1 Escherichia coli strain Pk8589 NODE_15_length_111574_cov_114.054845, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52055 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 52115 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 52175 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 52235 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 52295 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 52355 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 52415 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 52475 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 52535 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 52595 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 52655 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 52716 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 52776 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 52836 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 52896 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 52956 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 53016 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 53076 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //