Array 1 107201-106317 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDK01000003.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2666 NODE_3_length_562109_cov_0.322718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107200 29 100.0 32 ............................. CGCAGGACATCGGCGAGGATTGGCCAGGCCAT 107139 29 100.0 32 ............................. CGAAATCAGGCGTTTTTGGGTTTTCCTCAGTA 107078 29 100.0 32 ............................. GCTTTATGCTGCAAACTCTCCATCTCGGGAAG 107017 29 100.0 32 ............................. CGTAATTGGTAGTTCATCCGCTCATTTCATAT 106956 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 106895 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 106834 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 106773 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 106712 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 106651 29 100.0 32 ............................. ATTACTGATTTGTTCATTTTAATTCCCTTTGT 106590 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 106529 29 100.0 32 ............................. TTAGGGCATTCGGTCATAACGGATACGCCGCC 106468 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 106407 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 106346 29 100.0 0 ............................. | A [106319] ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125086-123471 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDK01000003.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2666 NODE_3_length_562109_cov_0.322718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125085 29 100.0 32 ............................. CTGTCACGTGAGCGTGAGCGCAGAAACGCACT 125024 29 100.0 32 ............................. CGTGGAAGGCGCAGATTCGTGGCGGTGCAGCT 124963 29 100.0 32 ............................. AATACAGACGCGGCAGTATTTGTGGAGGCGGC 124902 29 100.0 32 ............................. AAATCCAACCCGACGGCACGGGGTTGTCAGTT 124841 29 100.0 32 ............................. GGTACGCTCAAACAAATTTTTGTTGGTCTCGC 124780 29 96.6 32 ............................A GTTCCTCGCCGGGTGCCAGCCTGTCGTAGATC 124719 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 124658 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 124597 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 124536 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 124475 29 100.0 32 ............................. AATTACGTACGTTTGAGGGGTTGGGGATTCCG 124414 29 100.0 32 ............................. CCCCACGCAATGGCGCTAGCACTGGTTACGGG 124353 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 124292 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 124231 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 124170 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 124109 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 124048 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 123987 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 123926 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 123865 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 123804 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 123743 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 123682 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 123620 29 100.0 32 ............................. ATGTTTAATTTTGTAGCCCGCTACCTATCGCC 123559 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 123498 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAACCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //