Array 1 28875-26803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034664.1 Moraxella catarrhalis strain 74P50B1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28874 28 100.0 33 ............................ CACCAACGCTGTCTACTTGCTCAATTTTATTTG 28813 28 100.0 4 ............................ TCTA Deletion [28782] 28768 28 67.9 3 ...............CT..A.GACCGC. CAG Deletion [28738] 28753 28 100.0 32 ............................ TGTTTAACACACCAGTGATACTGCCCCGTCTA 28693 28 100.0 32 ............................ TCTGGAGCTGCTGTCCAATCTGTTGCGATGTT 28633 28 100.0 32 ............................ AAAAAACCAGCAGTGATAGCAAAGCCAAAACA 28573 28 100.0 32 ............................ TGACCGTGTCAAGGTTTTAGTATCGGGCGATG 28513 28 100.0 32 ............................ GTCGGCTGATGATATTGGGGTGTATTTTTAGT 28453 28 100.0 32 ............................ AAAAACCCTGTGATGATTGGCGTTGAACAAAT 28393 28 100.0 32 ............................ GCTCCAGCTTTGGCGGCGGCGTTAATCAAATC 28333 28 100.0 33 ............................ CTGTGATTTTATCAGCTAAAACTTGCCCACGGA 28272 28 100.0 32 ............................ AACTTTCAATAAACTGCTGCCAGCTTTGATGC 28212 28 100.0 32 ............................ ACATCAGGTGATCAGGCAGTTTTGGCAAGACT 28152 28 100.0 32 ............................ TTGGTCAAACAAGGAGAAAAAAGATGAGTAAC 28092 28 100.0 32 ............................ AGCAAATACAGCCAAAAACCAAAGCCAAGATA 28032 28 100.0 32 ............................ GTCTTAAGCCGGCCACAACACCTAAAGCACCT 27972 28 100.0 32 ............................ ACCTTAATCAAACCAAAACTGATGACTATAGA 27912 28 100.0 31 ............................ GCGATGGGCGGTATTTGATGATGTATTTGAT 27853 28 100.0 32 ............................ ACCATCTACAAGACCATATATTTCACCCTCTG 27793 28 100.0 33 ............................ CGCTAAGAAATCATGGAACAATATTAAACGCAG 27732 28 100.0 32 ............................ TTGAACGCACGCTAACAACAAACAATCAAAGC 27672 28 100.0 32 ............................ AAAGTTACTTGTGTTTTAGTTTGGGCAAGATA 27612 28 100.0 32 ............................ AGACCAAATCCGCCATGCTTGTTTACTACCAC 27552 28 100.0 32 ............................ TTATCGTTTTTATGATGCAGTGACACGCTTTT 27492 28 100.0 32 ............................ TAAATGTTGCATTAATCAGACCAACAATAATA 27432 28 100.0 32 ............................ AAGCTAAAGAATTTAAAATCAAATGGCAACCC 27372 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 27312 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 27252 28 100.0 32 ............................ AAGCGTTAATAGCTTAAGCGAAAGCTTAGCAA 27192 28 100.0 34 ............................ AAAAAAGAAAAACCGCCAGCACATGCCAGCGGTT 27130 28 96.4 32 ..................T......... ATATTGAAGCGTCTTAGATAAATCTCTAACTT 27070 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 27010 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 26951 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 26890 28 100.0 32 ............................ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 26830 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 36 28 99.0 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //