Array 1 81650-81870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000007.1 Clostridioides difficile strain BfR-CL00201 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 81650 24 100.0 41 ........................ CAGGTTTGATGGAAATAAAATAATAATAGAAAAAATAGAGG 81715 24 100.0 42 ........................ CAGGTACATAGCAAAAATAATTATAAGTTGGAGATTTTGTAT 81781 24 95.8 42 ....................A... CAAATATTGATATAGTAGATATAATAGAAGTTTTATTATTAG 81847 24 83.3 0 ......A.........TC..A... | ========== ====== ====== ====== ======================== ========================================== ================== 4 24 94.8 42 GTTTAAGATTAACTAAGTGGGTTT # Left flank : TTTGAAGAGAATTTTATAAGTTGTGATAAAGAAATTAAGAATATTTATGGTGTAAATAAAGAAATTTTTGATGGATTGGATTTAATTTTTAATTTTGAACCTTACAAAAATATTGTTGATAGTAAGAAGGAAGCAGCTAAAATTTTTAGAGATGTTGATGTTAGTTACAAAATTATTCTGGAAGAAGATTTTTATAAGGAAGATAGAGAGTTACAACAAGATTCGATTCAAGTATCAGGGTTTATATTTAATAGATTATATTATTATGGGTTAATAAGCAAAGTAGAAGGATACATGGTACTAAAATCTAGTAGTAAGTTTGAGTATAATAGTACTGTAGGCTTAATTTTGAAGTGAGCATATGTTTAAATATAATATACCTTTAGACATTGAAAATACAAAAAGTACTACTGTAAGTCCACTGTAAAAACTATTTTTTAAAAGGAAAAATAAGTTGTGAGATAGAGTGTTTACAAGTGTATATAGATAATAAATTTGAG # Right flank : TTTAAATATTCTGACTATTGTATAAGGATATTATTAGCTTGAATTTAAAACCAATAATATAAAACAACAAAATATTATATTTATGATATAATAAAAGTTATGGAAAAACAGGAATATTACTATAGAGAAGAGAGGTAAACTTATGAATAATTGGATAGAAGTAACTATAAAAACAACAACAGAAGCAGTTGAACCTATAACGAATATACTATATGAACAAGGAGCTGGAGGAGCTGTAATAGAAGACCCAAAAGACTTTTTATTCCAAAAGAAAAATGAACTAGACTGGGATTATGTTGAAGAAGAAGTATTTAAAAAGAATGAAGAAGATGATGTTCTTATAAAAACTTATGTTTCTGAAGAAAAAAATGTGATGGAATTTGTCGAAATAATAAAGCAAAAAGTTTTAGGATTAAAAGATTTTGGTATAGATATAGGTGAAGGAAGTGTATCATTGGACCAAGTAAATGAAGCTGATTGGGCAAATGCATGGAAAGCAT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGATTAACTAAGTGGGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 43-597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000124.1 Clostridioides difficile strain BfR-CL00201 124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 43 29 100.0 37 ............................. TGTTTTCTTCTCTCTGTTACTTCATCTTTTGTATCTA 109 29 100.0 36 ............................. AACATAGTAATATATGACCAGACAGGTAGAATAATC 174 29 100.0 36 ............................. ACAACAGCACCATACAAAAACCCATTTCTAAAAAAC 239 29 100.0 35 ............................. ATTTCTGTCTTTACTGCTGTAACGTATTGGTATGG 303 29 100.0 37 ............................. GACTTTGAAGAAAATAATTTAGTTATATCTTGGGAAG 369 29 100.0 38 ............................. TAACCTTTTTATTGTTGTTGTTATTCTTATTGTTATTC 436 29 100.0 37 ............................. TTTATCATTGTGTAATGCTCTTTAGTAATAGAACCTA 502 29 100.0 38 ............................. TTTACTGCATTTATACCATCTACACCTTTTATTTTATT 569 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGGG # Right flank : TAAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTGTATGATATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAGTAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 973-747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000015.1 Clostridioides difficile strain BfR-CL00201 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 972 29 100.0 37 ............................. TAGATTTTAGTCGTTTTTAAATTTTTCTCGTAATATA 906 29 100.0 36 ............................. ATATAAAAAGTCACTATTTCAGTTTCTTTACTCTGC 841 29 100.0 37 ............................. TCTATAGGAATTGCAATAGCTGGTGTTGTTGGCGGAA 775 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTTTATATCAACTATGTGGTATGTAAAA # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTTCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAACAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCAGAGAAATGAGCAAACACATCATCTCTACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 39-723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000128.1 Clostridioides difficile strain BfR-CL00201 128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 39 28 100.0 38 ............................ GTTTCATACTTTTATCAATGTTTAAATCATCAAAAATA 105 28 100.0 38 ............................ CCTCTTTATTTTTAGAGAACATCCACTTTGTTATATTA 171 28 92.9 37 .......A...C................ TGTTTTTTATGAACATATAGTTAAGCTTCCTATAGGC 236 28 92.9 38 .......A...C................ TATTGAAAACAGGAGAAATTGCAGTGTTTGGAGGTGTC 302 28 92.9 39 .......A...C................ ACAAATCGGTTATTTTTGGACACAAATCAGACATAAATC 369 28 100.0 38 ............................ TAATTAAATTATATTGCTATTTGGACGTTTTTTCAATC 435 28 100.0 37 ............................ TCCATACTTCTTTATTGCAGATGCGGCTTCTTCTGGC 500 28 100.0 37 ............................ TAATTTATCCTCTACTGAAAATTCTTCTTGTATCTTA 565 28 100.0 38 ............................ TAGCTGGAACTACTAAAACTGGTGTAGTAACTTTTAAA 631 28 100.0 37 ............................ GTAGTATCACCTAATCCTAACTCTCCATAATTATTAA 696 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 11 28 98.1 38 TTTACATTCCATATAGTTAATCTAAAAC # Left flank : GAAAAACACAAATATCTACTTTGCAAGCTTTGTTATCAT # Right flank : AGTTGTGTAGCTTAAAGGAGAGAGCTGAGGAATCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACATTCCATATAGTTAATCTAAAAC # Alternate repeat : TTTACATACCACATAGTTAATCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 524-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000104.1 Clostridioides difficile strain BfR-CL00201 104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 524 29 100.0 36 ............................. TTTAGTCTCAAATTCTATATTAATAATAATAGTCAC 589 29 100.0 38 ............................. AAATTTTACAATGTAATAAAACTACATTAGGGCATAAG 656 29 100.0 36 ............................. TTATTATCTGAGACTTCTTACTGTTAGCTTCAAATA 721 29 100.0 37 ............................. ATACGAAAAAGCAATATCATAATCACGTATGTTATCT 787 29 100.0 37 ............................. ATAAAAAAACGTATAATAAAAATAATTTCTATCTCTG 853 29 96.6 36 ............................T TTCAAAAGTTATAATATAATAGACTAAAAAACTGAT 918 29 93.1 37 ................A...........T ATTATTTCCCCTCTATCACCATTTAATTTAGGTTCAT 984 29 93.1 39 ................A...........T CGTATTAACACCTGTTCGGCACTATCACAATAAACACAA 1052 29 93.1 0 ................A...........T | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 97.3 37 GTTTTATATTAACTATGTGGAATGTAAAC # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTATTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCATTAAAAAACTTTCATAAAAACAAAAAGAACAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAC # Alternate repeat : GTTTTATATTAACTATATGGAATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 138046-138472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000002.1 Clostridioides difficile strain BfR-CL00201 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 138046 29 100.0 37 ............................. TCAATTAAATTATTATATTTTAATGCTCTTTTTAATC 138112 29 100.0 38 ............................. GCAGAGTTGATAGTACTATTAAAAGAAGAAAAGTTAAG 138179 29 100.0 36 ............................. CTATAACTTTTATTAATTTTTGTTTCATAATCTTTC 138244 29 100.0 38 ............................. TTAATCTTTAAAATTAAATATAAAAATAAGCTAGACAT 138311 29 100.0 36 ............................. TTAATAAAACTGATAGTAAAACTACTAATAATAAAG 138376 29 96.6 39 .................A........... ACTTTTAAAAATTATTTAGCGTTATATTGCTGCATAAAA 138444 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 38 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTAATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAACCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAGCCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTATTGGTCTCTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATCCTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 342007-342494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000002.1 Clostridioides difficile strain BfR-CL00201 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 342007 29 100.0 37 ............................. TACGGAGCGACCGTGCTTAACACTGCAATAGCATCTG 342073 29 100.0 36 ............................. ACTTATGAAAAAAAGAAAAGGGGATTGGGACAGCGA 342138 29 100.0 37 ............................. GAAAATCAAACTCTTGTGTGCATCGACGAAGGTGGTA 342204 29 100.0 36 ............................. GTTATAGTCTTTTGGATAACTACCCAATTAGGATTT 342269 29 100.0 37 ............................. AAAAATATTATAGATACAAAAAAAGATTCAGAAAACA 342335 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 342400 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 342466 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 95.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGCGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAATGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 44631-45389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000022.1 Clostridioides difficile strain BfR-CL00201 22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 44631 29 100.0 36 ............................. CGACCTTGTGGTTCCATAGCAACTATATACTCGTAC 44696 29 100.0 37 ............................. TATAAAAAGTCACTATTTCAGTCTCTTTACTCTGCAA 44762 29 100.0 38 ............................. TAATCTATCGAGGGCAAAACAGGAGCAGGGTCAACAGC 44829 29 100.0 37 ............................. ACGTACGTTGCATGTTCTTTAACAAAAGCATCTAATT 44895 29 100.0 37 ............................. ATGTATTTTTCATAATTTATTAAAGCTAATAACATGA 44961 29 100.0 37 ............................. GGTAAAAACATAAGAAATTATCCAAGCAGTAAAACCA 45027 29 100.0 37 ............................. CTATAAAAATATATCACAGAAACTAACCTCCTAAACT 45093 29 100.0 39 ............................. TTGCAAACAGACGCTAGTTTAAGTGATATATCAGCTAAG 45161 29 100.0 35 ............................. AGTCCAGACCCGTCTCCAGACCCTAATCCTCCTGT 45225 29 100.0 40 ............................. GTATATGTCATTGCGACTGCTGAAACAGATAATGTAGCTA 45294 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAT 45361 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGAATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGATGGGAATGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 47213-45473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBMH010000026.1 Clostridioides difficile strain BfR-CL00201 26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 47212 29 100.0 35 ............................. GCTCTTGTCGCAGTTGCTCCTGAAATTATTAATGT 47148 29 100.0 36 ............................. AAAACAAAAGGAGTGGTAAAAATGGCTAAGAAAAAA 47083 29 100.0 37 ............................. CTATGACGTAAATAGTCTATACCCTTATGTGATGAAG 47017 29 100.0 38 ............................. TGGTTGCGATTGGATTATTAGTAGCTGGACTTGTACAT 46950 29 100.0 38 ............................. TTTTAAATATACCAAGATTTCCTAAAAAAGTAGAAAAA 46883 29 100.0 37 ............................. ATCAATTCTATTTTTATCAGAAAGCGTTGAACGAGGA 46817 29 100.0 37 ............................. TGGATAGATGCAGAGGCTGACAAAACTAAAGTAGTAA 46751 29 100.0 38 ............................. GAGCCTGTCATACCTGCTATGAAAACATGCTCGTCTGT 46684 29 100.0 37 ............................. AAATTTCTTGCTATTTTACAGTCATTGTCATTGTCGC 46618 29 100.0 37 ............................. TTTTTAATTATTATGTCATCACCTAGTGTAACCTTAT 46552 29 100.0 37 ............................. CACATTGGCGTTGAAGCTGTTAGCAAAGCATTAAAAG 46486 29 100.0 36 ............................. GTAGCCTATTGTTTGGCTTCCTGACATTTCGTAAGA 46421 29 100.0 36 ............................. TTTTAACTATATTAAATAAGCGAATAATTAAAAGGG 46356 29 100.0 35 ............................. TTTAAATGGTGTGAATGGTGAAAGGCACACAACAC 46292 29 100.0 37 ............................. CTTCCTGTAGGTGCTACCATTAATACATTTTTACCCT 46226 29 100.0 36 ............................. AGGAGATAACTTCTATTAAAGATAACTTTGATGTGG 46161 29 100.0 37 ............................. ATGTAAAGTTTAGCAAATTCAATAGTATCCATATTGT 46095 29 100.0 36 ............................. TGGACACAACAAAAATTTTTCAAACCTTTTAAAAGA 46030 29 100.0 36 ............................. AATTTCTGTGCTAAAAATTTAGTTACAGAATATAAA 45965 29 100.0 37 ............................. CCTGTAGCACCTTTTATTATATTTTGAACGCTACCAC 45899 29 100.0 36 ............................. AGTGAATGTGACCAATTTTGTGACGAATTATCAGAG 45834 29 100.0 39 ............................. TAGAAAATAACGTCAGTAGTATTAGCAGGTAAATCTAAA 45766 29 100.0 37 ............................. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 45700 29 93.1 38 ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 45633 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 45567 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTTGAAATTT 45501 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ======================================= ================== 27 29 98.9 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAATATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //