Array 1 14408-15106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKNY010000039.1 Klebsiella pneumoniae strain UEB_24 NODE_39_length_40440_cov_43.485972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14408 28 96.4 33 ..........T................. CTGCGTTAATACCGCCGTTTGTCTGATTCAGAT 14469 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 14530 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 14591 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 14652 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 14713 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 14774 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGTGGTAC 14835 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 14896 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 14957 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 15018 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 15079 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23860-25596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKNY010000039.1 Klebsiella pneumoniae strain UEB_24 NODE_39_length_40440_cov_43.485972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 23860 28 100.0 33 ............................ CGTTTAGTTTTTTGATGGAGGGCGGCGTTGTTC 23921 28 100.0 33 ............................ TTGCGTGCCTTGCGTTAATACAGACATGTTTTG 23982 28 100.0 33 ............................ TGAGTGCATATTATGTTTATCGGACCCGGCGGG 24043 28 100.0 33 ............................ CGATGTCCAGGTCGGCGTCCGGATGAAAGGCCA 24104 28 100.0 33 ............................ CGGGGATCGTTATGTCTTCTCTTTCTGGTTAGA 24165 28 100.0 33 ............................ TCCGCCTCTTGCTTCCGACCTGGTAAAAGCGAT 24226 28 100.0 33 ............................ CCGGATTCGATGAAATTTCCGGTAACTCAATGA 24287 28 100.0 33 ............................ TTTCACGCTGCCGCTGATGGCGTGGCTGTGGGT 24348 28 100.0 33 ............................ CGGATCCCACGCGGGCTGTATTCTCTACATCGG 24409 28 100.0 33 ............................ CTTCACTTCCTCGGCACGTCAGCCGCGACAGCG 24470 28 100.0 33 ............................ CAGGTCGATATGCAGAGAAAGGTTGCATGGGTA 24531 28 100.0 33 ............................ CATCATTGCCCGCGCGGCCCTCAGGCACGAGGG 24592 28 100.0 33 ............................ CAGCACAGTGGGAAAGCGACATTCCGTTAATTA 24653 28 100.0 33 ............................ CAACCAACCGACGACGGACCTCAACGCCGCGCA 24714 28 100.0 33 ............................ CGCAACTTTAGCGGCGCTGTATTCTGCGTCGGT 24775 28 100.0 33 ............................ TACCGGATCAAGTTCTGGCAGGTCGATGACGAC 24836 28 100.0 33 ............................ CGAGGGTTTGAGCGAAAGAGCGGAGCTTTTTAC 24897 28 100.0 33 ............................ CCCCCAATAAGGCAGCTGATTTCTTCGGCGTTT 24958 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 25019 28 100.0 33 ............................ TATGCTTTCTGCTGCTACTGACGCAATTGATCC 25080 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 25141 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG G [25163] 25204 28 100.0 33 ............................ TGGATCGTCGGCAGCTCACTGCTGGATATTGCG 25265 28 100.0 33 ............................ CAATTACCGCGACTGCGGGAATGCTCTGAAGAT 25326 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 25387 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 25448 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 25509 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 25570 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGGCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACTGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67656-71832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKNY010000022.1 Klebsiella pneumoniae strain UEB_24 NODE_22_length_98061_cov_65.326710, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67656 29 100.0 32 ............................. TATGGGACGTTGCCCACGTTCACCCGCCAGTG 67717 29 100.0 32 ............................. GCCAGTAGGCCGAAGCTGAACGGGGGAAAATC 67778 29 100.0 32 ............................. ATCTGCGGGCAGAGTACGAGCGGCTCAGCCGA 67839 29 100.0 32 ............................. ATTTTATTCCGAGCGCAGCATATTTCGTCCGC 67900 29 100.0 32 ............................. AAATTGCAGAAAAAATCAATGGGTTGACAAAT 67961 29 100.0 32 ............................. AATGATATCACCGAACTGGCGCAGAGAGAGAA 68022 29 100.0 32 ............................. CAAACTCTGTCCGACCGCCTCAAAAATAAACG 68083 29 100.0 32 ............................. TTGTCCGCCCGCCAGCGCTCAATAGGGGCTAC 68144 29 100.0 32 ............................. GCTATTGGCGTTACACGGAAGAACAACACGAG 68205 29 100.0 32 ............................. GCAACAGCGCACTGTTGAAATCGCTGCAGGAC 68266 29 100.0 32 ............................. CGCGTGCGCTGGTGCCTTGAAATTTTTGCAGC 68327 29 100.0 32 ............................. GACTGCTGGCGCTCACCACCGGAGATATTCGA 68388 29 100.0 32 ............................. GCGTGTCGCCGTTCGGGCGGGCGTTTAGCACC 68449 29 100.0 32 ............................. TGCTTTGCCCCTTCGTGGCCGTTACCGACACT 68510 29 100.0 32 ............................. TTTGCTTCGGTTAATCAGTCGCATATTCACCT 68571 29 100.0 32 ............................. ATCTTCTTCGTCTCGGAATTCTAAAGAATCCC 68632 29 100.0 32 ............................. GGGTGGGGATAACTGCGGTCGATGAGCTATTC 68693 29 100.0 32 ............................. GTGCAGGCACGAAAAAAGCCGACGAACTGCAG 68754 29 100.0 32 ............................. TGTTTTTTGTCAAATGATGAACTGTTTTTTAT 68815 29 100.0 32 ............................. ATATTCCCGGCGCCGGTGACATTCCGCGTGAC 68876 29 100.0 32 ............................. TTCGCCTTTCTGTCTGCAGAGGCGCGGACAGG 68937 29 100.0 32 ............................. TAGCTGGCCGTTTCAGTTGCGCGTGCGTCTGG 68998 29 100.0 32 ............................. CGCATCGCCGAGCTGGAGTCCCGCACCGTCAC 69059 29 100.0 32 ............................. GTTCATCTCTGACCTTGAGGATGAATCCCATC 69120 29 100.0 32 ............................. TGGTCGAGATCATCAGTAGGCCACTCACCATA 69181 29 100.0 32 ............................. GTGCCGAGTCGCCCGACACCGGCGATCATGCC 69242 29 100.0 32 ............................. GTAGTACGGGTAATCGTCATTGCCGCCGTACA 69303 29 100.0 32 ............................. CCTAAAGACAAACCATACCGCATGCTCGACAG 69364 29 100.0 32 ............................. TATGTATGCCCAGTAACTTTTACATTCTGAGT 69425 29 100.0 32 ............................. ATGGTCTGCGGCCGCATGGTACCGAAGAAAAA 69486 29 100.0 32 ............................. CGGGCCAGCGCTTCAGCTTCTTCTGCTGGGAG 69547 29 100.0 32 ............................. AACCCCTGATTTCCCCAGAGTCGGCAGTTTCT 69608 29 100.0 32 ............................. TCTGGTCTGATGGCGTTTATAACTACAGCCAG 69669 29 100.0 32 ............................. CGAAAGAGGCGGTAACAAAAAAACTATCACAG 69730 29 100.0 32 ............................. AGGTTAGTTGCCCATCGTACATTTTGATTACC 69791 29 100.0 32 ............................. GATTCCGGTCACTCCTGGTCAGCAGCTGGTGT 69852 29 100.0 32 ............................. CCTAAACACCAGGATTTTCTTTACGCCGAACG 69913 29 100.0 32 ............................. TCCCGGACGTAATCCGTTATTGGGCGAACGTC 69974 29 100.0 33 ............................. GGAGCCCGTATTGATTGCGTCCTATCACCAGGC 70036 29 100.0 32 ............................. ACTGATATCTACTACCCGCATGACAGTCTTCC 70097 29 100.0 32 ............................. GCCTTGCACCATCTGATCCATGGCGCCGATGT 70158 29 100.0 32 ............................. CGTCTGCAATGATCGCAGTAGAGCCGGGGAAA 70219 29 100.0 32 ............................. CGAACCCCGCCGCCGCAGCCAGCGCGGCCATA 70280 29 100.0 32 ............................. CGGGAACAAAACCACCACGGCGAGGTACATCT 70341 29 100.0 32 ............................. GGTCGTAAAGGTGACCAGGGTGACCCCGGCCC 70402 29 100.0 32 ............................. GGATGGTAAGAGTGAAAAAACAACAGAAAAAG 70463 29 100.0 32 ............................. ATTTGAAAGATACGTTTCGGGATAGATGGAAT 70524 29 100.0 32 ............................. CCTACCGCCCTGACGTTCTGTTTCGCCAGGTT 70585 29 100.0 32 ............................. CGACGGCAGAGTGTCGTTTTATCACCGCGGGA 70646 29 93.1 32 ...C........................T GATGGACCTTAGCAATCTCCAGCAGGCCAGTC 70707 29 100.0 32 ............................. CGTCACAACGCCGGCGACAGTAACATCGTCCA 70768 29 100.0 32 ............................. AATCGGATGTTCATAATATCCAGCCCATTCCT 70829 29 100.0 31 ............................. CCGGCCCGTTCCAGTCGTCCCTGGCAAACGA 70889 29 100.0 32 ............................. AACGGAGTTTACAACCCAGGCGCCCTGATGAT 70950 29 100.0 32 ............................. CAAATCCTGGTGTCGTCAGCACAGACCTGACT 71011 29 100.0 32 ............................. GAGCAGTAACTGCCGTTAATGTCCTCACCGGG 71072 29 100.0 32 ............................. GCTCGGCGTAGTGCGTGCCGTTAAAGCCGATT 71133 29 100.0 32 ............................. TCTATTTTTGTTCTGGCCAGCGCGCCGGTGAA 71194 29 100.0 32 ............................. TGTATTGCTACCCGCACTAAAAAGGCGGCATA 71255 29 100.0 32 ............................. AGAACGGGATACCCTACATCTTTGATGCCTAT 71316 29 100.0 32 ............................. GGACGAGCTTTTCCGCCGCGCTGATAAAGTCC 71377 29 100.0 32 ............................. TTCGAGTTACGGGTGAGTGGAAAAAACGTAAT 71438 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 71499 29 100.0 32 ............................. GTTCTCTGCGCTGGCCTTGTCCGGTGCATCCT 71560 29 100.0 32 ............................. GTGATGGCGAAATCGATGGCGAACTGTTGGTA 71621 29 100.0 32 ............................. GCGTAACGGGACGCGGAACCGACAGGAAGCCC 71682 29 100.0 32 ............................. CAATCAACAGGTGCGGAACCGGTTCAAGAATA 71743 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 71804 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //