Array 1 2821373-2820551 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCZU01000001.1 Escherichia coli strain EC_37 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2821372 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 2821311 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 2821250 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 2821189 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 2821128 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 2821067 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 2821006 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 2820945 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 2820884 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 2820823 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 2820762 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 2820701 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 2820640 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 2820579 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2849665-2848355 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCZU01000001.1 Escherichia coli strain EC_37 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2849664 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 2849603 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 2849542 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 2849481 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 2849420 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 2849359 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 2849298 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 2849237 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 2849176 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 2849115 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 2849054 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 2848993 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 2848932 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 2848871 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 2848810 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 2848749 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 2848688 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 2848627 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 2848566 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 2848505 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 2848444 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 2848383 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //