Array 1 237098-238284 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUN01000002.1 Salmonella enterica strain BCW_3066 NODE_2_length_406798_cov_3.44678, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237098 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 237159 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 237220 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 237281 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 237342 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 237403 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 237464 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 237525 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 237586 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 237647 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 237708 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 237769 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 237830 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 237891 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 237952 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 238013 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 238074 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 238135 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 238196 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 238257 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 254966-256705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUN01000002.1 Salmonella enterica strain BCW_3066 NODE_2_length_406798_cov_3.44678, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 254966 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 255027 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 255088 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 255149 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 255210 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 255271 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 255332 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 255393 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 255454 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 255515 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 255576 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 255637 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 255698 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 255759 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 255820 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 255881 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 255942 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 256003 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 256065 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 256127 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 256188 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 256249 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 256310 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 256371 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 256432 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 256493 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 256554 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 256615 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 256676 29 100.0 0 ............................. | A [256703] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //