Array 1 39-797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000246.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence246_087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. TAATCAATCCAAGCGGGTTTTCCACTCATGTC 100 29 96.6 32 G............................ AAATGATCGGCTTGAGATTTCCAATCGCTTCC 161 28 93.1 32 G......-..................... CATTAATATCCGGCTTTAAGCTATCTGCTTCA 221 29 100.0 31 ............................. TTAATTCATCTATCTCATTTTGCTCTTGTTA 281 29 100.0 32 ............................. TCATTTACTTCTTCTTTTTTATTCTCAATTGC 342 29 96.6 32 T............................ TAACAAAATCGGGCGTATATGATATACTTGAT 403 29 100.0 32 ............................. GATAGCATTTTAGACGGCATAGAATCCGAAGA 464 29 100.0 32 ............................. GATAAGCTTCACTGATAGGTTGCATAGGGCGT 525 29 100.0 32 ............................. CAGCCATAAGGTTTTAGCTCCGACTGGATAAC 586 29 100.0 32 ............................. GTGTTAGGATTTGTTTTATTATGGTTGTGTTT 647 29 100.0 32 ............................. CGTGATAAGCGCTATCGTGCAAATGCTTTTCA 708 29 100.0 32 ............................. GAAGTTGGATCTTGAGCAGGTAGAAGATGTAG 769 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 AGGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : AAAGACGCTAAGTAATCATAGTAACTCTTAGCATTCGTA # Right flank : CAGTTAAAGATCCCTACAAAAACAGCATTTTTAATTCACCATTTTCAAAAATTTATTCACTTTTGTCGATAATTGATATATTATTTTCGCATCTTCCAGAGCTCGGTGAGGTACATAATCATCAAATCCATAACTTACTAAAGCTGTTTTTAATTTATAATCACTGAGAAGCATTTTTTCTCGTTTAATATACCGAATTAAATCATGAGGCTTATTTGATAACTTTATTAAGTCATGATCCTTTAAATATTTATTCAAAAAGCGAAGATCAAAGTCAAGTCCGTAACCAACTATAGGAAAATCTTCTATAAAGTCTACAAACTCCATTAATGAATCCTTTAAAGGTTGACCATTTTCATCTAATAAATCTTGAGTGATACCAGTTAACTTAATAATATCTGTTGGTAATTCCTTATCGTATTTAATTAATCGATGAAAATTTGTTAGTTTTCCTCCATCCAGCTTAACTGCTCCGATTTCAATAATTTGATTATCGTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 265-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000287.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence302_292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 264 28 100.0 33 ............................ ATGACATGATGCGCTGGTATACGAATAACGTTG 203 28 100.0 34 ............................ TGCCAGCTTTTCCGTCTTCTTTGATTTGTTTTGG 141 28 100.0 33 ............................ TTGGTTCTTCAAATAGATACGATAGCTTAAACA 80 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 4 28 100.0 34 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : TTTCCAACACGAAAGCATAAAAACGTTG # Right flank : CTTAATTGAACAAAGGATGCAAAGAGGGAAGACAGGATCACCCCCGCTTATGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 56-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000297.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence315_085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 56 27 96.4 34 ......-..................... GTTTTATATGAATGCCTTATACGTGAAGATTATA 117 28 100.0 33 ............................ TGTTCCTGAGGTGGATCAAGGGTACGGCGTATA 178 28 100.0 33 ............................ GTTGCTTTTATCGGTTGTTCTATGTCCCCGCTG 239 28 100.0 33 ............................ CGTGGGAAAAGAATTTCATATTGAACAAGTATA 300 28 100.0 33 ............................ ACAAATATACTAAATACAATGTTACGTTCGTTA 361 28 100.0 33 ............................ TTAATTCGCTTTATTCGCAAATGATTGATAGAA 422 28 100.0 33 ............................ GTAATTGTTTTCTTGTCATTAGCTACCTCCTCG 483 28 100.0 33 ............................ ATGATCTATCAAAAAGTGATAAAACAATTTTTA 544 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : CCCCCGCTTATGCGGGAAAGACTCAGTTAAAAGTGGAGGTTTTTCCCAATTTTAAG # Right flank : TGGGTTAAAGGAGCGCCGTAATTTTGTACCCCGGGATCACCCCCGCTTATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 119-884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000043.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence043_075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 119 37 100.0 36 ..................................... AAGCTTCTTTTTCTTTTTTGACTTCTAGGAAATTTT 192 37 100.0 35 ..................................... GTTGTCGTCCAAATAGTCAATAACGGTATCTAGGA 264 37 100.0 38 ..................................... GTAGGTTCTTCGTATTCAATATATTCGATAACCGTATC 339 37 100.0 36 ..................................... TCATCGACAATAATTTCGTTTTCATATGTTATCCAA 412 37 100.0 35 ..................................... TGTTTTTCCGTGTATTCGTCCATATGGTAAAGCCC 484 37 100.0 38 ..................................... TTCACAGTGTTCCATAAATTATTTTCATTGTTATCCTC 559 37 97.3 35 A.................................... ACGATTTTATTTTCATATGTTATCCAATTTTCTAA 631 37 97.3 35 C.................................... CCATATAGTTCTTTAAGTTCTTATTCATGTTTATC 703 37 100.0 36 ..................................... AAGTCTGTTAGGATTTCTTGGATATCACTTTCCTTT 776 37 100.0 35 ..................................... GCTGCAGCAGCCATGTTAACCGTTCCGACAGACCT 848 37 94.6 0 G...................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.0 36 TAATAGATCCTTAACCCCAATAGATGGGGACGAGAAC # Left flank : ATATAAAATATTGGTTAGTTTTCAGGCATCAATTTTTGTTTCAAGTGAGTAACTGGCTAATATATGGACTGAAAAAAAGAGCGCTGAAAGCTGGTGTTAATGCTTTTAATACAATATCT # Right flank : TATATTCACGATCTGCTTTACCATTTAATAAAAAATAAGCTCTATTAAATGAGAATGAGGAGTAAAAAAAGGAGAGACTAATAATTGAATTTATTTGGATTTGAGATTGGAAAAAAGAAAAAAAGTAGAGAACAAAGACAAAAAGAATTGAACAAGAAATATATTAATTTCAACCGACACCCAAGATACGAACAACTGCATTACCAAACTGAATTGTTTCAATATGGTTGGCTTGTAAATGTGAGAGATGAAAAAGAACTCGGAAAGGCAATGTTAAATGACAAAGCTTGGTACTGTATTAGATATGCAGGGGTTTATAAGTCAGATACAAAGAACAAGCCTCGGAATTTAATACGGATTGGGGATTTAAATCGAGTTGAGATTTATAGTGAAGAGAACTAGGTTTATGGAAAAATGAAAGCGATATAAATTTGTTTTGAGATTGAAGAGTCGTTAATAAAAATTCTATATCCGGGAAAAGCTTAGTATGTAAGGAGTGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATAGATCCTTAACCCCAATAGATGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 156-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000036.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence036_084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 155 28 100.0 33 ............................ ACACAAAAAGACGTACAGCTAGGCAATCTAGGG 94 28 100.0 33 ............................ GTAGAACGAATGGCAGCATACTTGGTAATGTAA 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : TTACGTACAACAAATTCTTTGGAACGCTTAAATCGGGAAATCCGACGTCGGGAAAAAGTCGTTTCGATCTTTCCCAACGTCGTTTCCGCTGAACGTTTGATTGGCGCCGTTTTAATGGATATACAAGAAGAATGGCAACAAATGCCCAAACCGTTTTTTCCAAGGTCCTGTCTTAGAAGAAGAGTTCCCTTTCTCTACGGATTGATCTTTAAAGAAAACGAAGAACGATTTGACAATGAATGAAGGCATGGTATTCGCGGTAAGCGAAATGGGCGCCTGTTCTTAGGTTGAAGAACCGAAGAAGCCGCCCAAGATCACCATGCCTGAATAGATTCGTTGTCAAACCCGTCGGCTACCTGATCTTATTCGTCGTTTCTAGAAAAATTTAAACCATAAATAAAAAGAATCCTTATCAAATGATTAGAAAATCGTTCAACAGACAAAGCGTAAATGACATTGATATTTTTACACAAGATTTTGGGCTTGACCGCGAAAGACTA # Right flank : CTTCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 540-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVT01000076.1 Tetragenococcus muriaticus 3MR10-3 WGS_Sequence076_086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 539 29 100.0 32 ............................. TTCCAAAGTCCACGCGCAAGATTGACAACGGT 478 29 100.0 32 ............................. GCCTTGTTCCGGACGGTACCAACAGCTGATGT 417 29 100.0 32 ............................. TGTTTTGCTTCCTCAATACTTGGCATAAGCAT 356 29 100.0 29 ............................. TACCTCATTAATACTTCCTCAGTCCAATC 298 29 100.0 32 ............................. ATTTGATCGATCTTTTGGACAATATGCTGAAA 237 29 100.0 32 ............................. TTATGAATTTCTCCGAAAGGGAAATGTATGAT 176 29 100.0 32 ............................. TGCAAGAGTTGGTAAGAAGTCAATCGATTTTG 115 29 100.0 32 ............................. AGGGTAGAAAAACTCAATCGTGTATCGTTGTT 54 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 AGGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : TTTTCGTAAAAGTTTGGACGAC # Right flank : CGCCCAATTTTAGCTTATTTAAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //