Array 1 309233-306605 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065632.1 Clostridium perfringens strain FDAARGOS_931 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 309232 29 100.0 36 ............................. TGAATTTCGACATACCAATGCCCATCAGTATGCTTG 309167 29 100.0 36 ............................. ATGTTTACAATAGAAAATACAGTAGATGAATTTTTT 309102 29 100.0 36 ............................. GAAGATGACTTCTCAGAAGATGTAGGAATAGATTTA 309037 29 100.0 36 ............................. GAAGAAAGCATTAAGTATGGTAAAACCAATGGAGAA 308972 29 100.0 37 ............................. TCATTATAATGGTTCTCATAAATAAGGATTTTTTCAT 308906 29 100.0 36 ............................. CTGGAAAATCTGTAATTACCCCAAGTCCTGTATAGG 308841 29 100.0 36 ............................. TAGCTGAGGGTGTTTTAAATATGGATATAGATGAAA 308776 29 100.0 37 ............................. TCATAAGACAAATAAATTTCAAATCCTTCAATATTAG 308710 29 100.0 37 ............................. AAACTAAATAGATGGATAGTAAATGAAAATGTAGAAG 308644 29 100.0 37 ............................. ACCTGTAAAATTTCTTTTTCATAAGTTTTGCTCTAGC 308578 29 100.0 37 ............................. AATGAAACATGGTATTACAAAGCTAGAGCAGTAAATA 308512 29 100.0 37 ............................. TCATTATTTGTATGCTGGCAATCAAAAGGAAGTATTG 308446 29 100.0 37 ............................. TCTTTATATACAAGATATTCAGGTCTGTACTTTTCAA 308380 29 96.6 37 .......C..................... GAAGGAAAAGAGAATTTTGGTAAGAAACTAGACTTTA 308314 29 93.1 36 ........C.T.................. ACTAAATATTTAAATAATAATGTTAAATCACTTATA 308249 29 100.0 36 ............................. GTAGATGCATTAAATTGGTATTTCCCCAATGAATAT 308184 29 96.6 37 ...........G................. GGAGGCGCTTTATTTAGAAACAATGGTAAAGATGCTA 308118 29 96.6 37 .................C........... ATTGGAATTGGAATCATGGGTACTATGATTGGGTTAT 308052 29 100.0 36 ............................. GTTTCAATAGAACCAAAATTAGATCTACTTATATTT 307987 29 96.6 37 ..........T.................. ATATCTTGTAGTGTCTTAGAATATAATTGAACACCTG 307921 29 96.6 37 .................C........... TCTAAAGTATTTATTCTACTTTCTGTATTAGAAACTC 307855 29 100.0 37 ............................. GTTTGTATATGCCCTTTAATTGCTAACTGTTGTCCTT 307789 29 100.0 37 ............................. TAACTAGTTCTTGTTATAGTAGCTTCTCTTTGTGTAG 307723 29 100.0 37 ............................. TTTATCGTTTCATAACTAAAAGTTATCAAAAACTCTG 307657 29 100.0 37 ............................. CCAGAGCCAACTCCCTTTTTTGATTGTTGGGCTGAGG 307591 29 100.0 36 ............................. GCAAAATTAGGAGAAGATAAGAAAGTGAGTGAATAA 307526 29 100.0 36 ............................. TATAAATCTAATATCTCGGCCCAACAATTATAAAAA 307461 29 100.0 37 ............................. TCTAGTACGCTAGAATCAATTTTAAGCGACTTTCTTT 307395 29 100.0 36 ............................. GTGTTAATCCATGGAGTAGTTGATACTAAGAAAATT 307330 29 100.0 36 ............................. TAGATATATTTAAACTTTGCTACACATTGCATCTCA 307265 29 100.0 36 ............................. TTTTAGGGGGATGGCTTTTTTCTCCATGTTTTTTTC 307200 29 100.0 35 ............................. AATGCTAAAACAAGTACAAAACAATATGTAAATGA 307136 29 100.0 37 ............................. TTAGAAATATAGTCTAGCTTAGTGGCAACTACAGTAT 307070 29 100.0 37 ............................. GAAAGTACGATGATTGAGTTTAACTCCGAAGTTTATG 307004 29 100.0 36 ............................. TTAAGTAAGAAAGTATTTTCAGATTTATATGGACAA 306939 29 100.0 37 ............................. TAAGAACAGTTAATTGAGAAGTTAGGCGTTATTTCTA 306873 29 96.6 94 ............................T TAATATTAACAAGGAAACAATAATAAAGAGATAATATATTTTATATTACTCATAAAAATGAGTGTTGATTTATTAATAAAGTTTACTTTGTTTT T [306853] 306749 29 75.9 41 A...............T...T....GGTA TTAGTTATAAATTTTAAATACATATCATGATAAAGTTCAAT 306679 29 75.9 18 A.T.........T..AG...A.......T AATCTTGAAATAATTGTT Deletion [306633] 306632 28 86.2 0 A...............G......-..G.. | ========== ====== ====== ====== ============================= ============================================================================================== ================== 40 29 97.8 38 GTATTAATTTCACTATATTAGTTATAAAG # Left flank : ATTTATCAATAGAAAGTAATCAATCAAATTATTTAACAGATACAAAACCAAAAGCAATTATTTTAGGAGAATACTCATGGGGAAATAATATGTTCCAAGGATTAATAACTAAAAATGGAATTAATATTGATGGATTAAAAGAAGTTTTAGATGAATATGATGACTACAGACTAAGTAAAATATGGATTGGATTAAGCAATACCATAAAGTCAGAAAGTTTCAATAATAATATAAAAGAAATAAAAGAAAAGTTAATAGATTATGATGTAAAAGTAACCTCTGTAGGAAAAGTTTTCGATGAATATTTAGAATATATAGAAAAAACTTTAGAATAATAATTTTTGCAGTAAACCTAATTAAAAGCAAAATAGATATAAGCCTTGAAATAACTAAGCTTTAAACAATTTTTATAAAAAGTAAAAAAACATTACTTAAGGTCTACTGCAAAATTAATGAATTAATACATTTAAAAGTAAGTAATATAGCTATTTTAAGATGGG # Right flank : ATATTATTTATAAAAAAATATTTATTAAGGTGAATTATATGGATTATTATATTTTAAAGAATTATAAAGCGAAATTAGATGGAACGACAATATATCAGCACTCATTAAATTTAGTAGATATTCTATCACAATTGAATGATATACATGAAATAGATGATATTAATACTTTAAATAAGTGTGCAATGTTACATGATATAGGAAAATGCGTTAAAGAGTTTCAAGATAATATTGAGAATACTCATAGAAAAGTAAGACATGAACTATTGTCCGCAAGTTATTTAAATCTATCATTTAAAGAAAGACTAATCATTTTATTACATCATAAAAAAATAGATTACTGGAAAAGTGTAATAGGTAATGAGTGTTATGTAGAGGAGCTTGAAGAAATAAAATCTGAGTTAAATTGTGATTTCGAAAATATAAATAATTTTTTAAAGAGTTTATATAGAAGAAATATAGAACAATCATTGAAAGATAAAGAACTTATCCTTATGTTAGGA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTTCACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //