Array 1 44185-42698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWOY01000003.1 Neisseria meningitidis strain NmHE84005 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44184 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 44118 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 44052 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 43986 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43920 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 43854 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43788 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 43722 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43656 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 43590 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 43524 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43458 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43392 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43326 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43260 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43194 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43128 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43062 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 42997 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 42931 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 42865 36 100.0 30 .................................... GTTTGTTTCAGCAATGGCAAGCATATTTTT 42799 36 100.0 30 .................................... TTTGCCTCGCTGCAATCGTAATTCTCGAAG 42733 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //