Array 1 1493-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNY01000012.1 Salmonella enterica strain BCW_4921 NODE_12_length_114614_cov_5.12011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1492 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 1431 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 1370 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 1309 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 1248 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 1187 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 1126 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 1065 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 1004 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 943 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 882 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 821 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 760 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 699 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 638 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 577 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 516 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 455 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 393 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 331 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 270 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 148 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 87 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19971-18174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNY01000012.1 Salmonella enterica strain BCW_4921 NODE_12_length_114614_cov_5.12011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19970 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 19909 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 19848 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 19787 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 19726 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 19665 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 19604 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 19543 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 19482 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 19421 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 19360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 19299 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 19238 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 19177 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 19116 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 19055 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 18994 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18933 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 18811 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 18750 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 18689 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 18628 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 18567 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 18506 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 18445 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 18384 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 18323 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 18262 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 18201 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNY01000013.1 Salmonella enterica strain BCW_4921 NODE_13_length_108417_cov_5.19536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 118 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 179 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 240 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 301 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 362 29 100.0 0 ............................. | A [389] ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGGAGACGCCAGATGAATTCTGCGGGACAAGAGAG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //