Array 1 296625-297013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGOY010000004.1 Pseudomonas cichorii strain WSXC14 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 296625 28 100.0 32 ............................ ACTCCAGGCGTTTCCCGTTGCTGAGGCTGTTG 296685 28 100.0 32 ............................ ATGACGCCCCTGCATATGGGGCTGCAAAGGAG 296745 28 96.4 32 T........................... ATTGCGACACTACCACCCGAAGCAAGGCCCGC 296805 28 100.0 32 ............................ AACGAGGATCGCCGCCGCTCAGGCGTTCGCCG 296865 28 100.0 32 ............................ ACGGTTCGCGGGACGCTTAAAGAGGTTGATCC 296925 28 96.4 33 ............A............... GCAGATTGCCTATTTGATCCTTTATTCATTGCT 296986 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.4 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTCGCTGTGCTGCCAGACCTGATCCCCCTCGGGGCACCACATAGCAAGACACTCAAGCGGTTGCAAAGCTTGAGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCCGGGTTTTGGTGATTGTCGGCCTGTAGGAGCGCGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGTACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCACACCTAACTGAGTAAGAGCGAATTCATTCGCGAAGACGGCATTCCAGACAATACACCTCCTTTGAATGTACCGACCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCCCCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCGCCCCTTTAAAATCAACAAGTTACGGCCCCCTCAAAAAAGAGGGTAAAACGGTCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATGAGGCAAGGTGTCTT # Right flank : CCACTTCATAACCGTCAAATCCTACACCCCACTCACACCCGCCCTACAATCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCCACCCTGCCCCCAAACTAACCTTCCCGTCATTCGCTGCCCATCAGCGACCGGGTTTGGCGACCTGGTTTAAAGATAAATTCCTCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTACATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTCCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCCCGCTTAATG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 308542-308870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGOY010000004.1 Pseudomonas cichorii strain WSXC14 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 308542 28 100.0 32 ............................ CGTAGCGTTCGTTTTCGATCATGTAGGTAATG 308602 28 100.0 32 ............................ TGCCAGTGAGGGTCGACGTGACCATTACTTAT 308662 28 100.0 33 ............................ TACCGCTGTGGGTAACTCGAACATCACGTTCAG 308723 28 100.0 32 ............................ ACGCCATCGTGTCCGATGATGATCTGCGACTT 308783 28 100.0 32 ............................ TACATGATGCGCGCCTCTGAGAAGCTGCGAGC 308843 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTCCGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCTTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAATACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCCCTGAGCGTGTTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGACATGCCCCATGTGGTGATGGAAGTGCCTCCCCAGCCCAGACGAGGAATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGGCGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCAGCCCCCTCCAGGCCCTTTTAAAATCAATGACTTATAAAAGTCTCGAAAAAAAGGGTAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : ACCGAATTGCTCCAGGACCTGAAATTCCCAACCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGCGTAGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGGACAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTTGCAGCCGTCGAAACCACCCGGATGCCCATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAGATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAAGGCCATCGAGAACCGGGAAGACATCGCGACGGAGATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //