Array 1 28975-29945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDL01000003.1 Riemerella anatipestifer strain RCAD0181 ZB100002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28975 47 100.0 30 ............................................... AATGTAAATCCAGATGATTTCACTTCGTTA 29052 47 100.0 30 ............................................... AACAAAGAGAGTGAATTGTTTTTATAGCTT 29129 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29206 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29283 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29360 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29437 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29514 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29591 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29668 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29745 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29822 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 29899 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 99.2 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 12196-13549 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDL01000014.1 Riemerella anatipestifer strain RCAD0181 ZB100013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ================================================================================================== ================== 12196 21 95.2 44 ................G.... GAGAGCAGTCCCAACATCGCTGTATTTCAGGAAAAAGGAAAGCG Deletion [12261] 12262 21 100.0 95 ..................... CTGTGCATTCACGAACTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAA 12379 21 100.0 95 ..................... TTATGCATTCACGAACTCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGAC 12496 21 100.0 94 ..................... TTATGCATTCACGAACTCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGA 12612 21 100.0 95 ..................... CTGTGCATTCACGAACTCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATC 12729 21 100.0 94 ..................... CTATGCATTCACGAACTCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGG 12845 21 100.0 95 ..................... TTACGCATTCACGAACTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTA 12962 21 100.0 44 ..................... GAGAGTAGTCCCAACCTTTCAGCCTATCTTTATTTAAAGCCATT Deletion [13027] 13028 21 100.0 44 ..................... GAGAGTAGTCCCAACGTTCCCTTTATAATTTTCTTCTGCTTCAA Deletion [13093] 13094 21 100.0 44 ..................... GAGAGTAGTCCCAACACTTACTTTTGATACAATTGAATACGAGT Deletion [13159] 13160 21 100.0 45 ..................... GAGAGCAGTCCCAACGGTACAAAGATTATAAATCTTCATTGGTGG Deletion [13226] 13226 21 100.0 97 ..................... CTGTGCATTCACGAACTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACAGTTTACACCAGCAAAAGGGACAAAAAGAT 13344 21 95.2 98 .........C........... CTTAAGCATTCACGAACTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGAT 13463 21 95.2 44 ...................A. AGAGCAATCCCAACTAGATGAAAGTGGTAATCTTAACTTTGTTC A [13479] Deletion [13528] 13529 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ================================================================================================== ================== 15 21 99.0 74 GTTGTGAATACCCTTCAAATG # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : GCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATGCAGCTGCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:-0.5, 7:-2.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATG # Alternate repeat : GTTGTGAATACCCTTCAAATGAGAGTAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [8-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //