Array 1 493028-491599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTO010000002.1 Corynebacterium sp. TAE3-ERU30 Seq2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 493027 28 100.0 33 ............................ GGATCAAAGCATGAAGAAAATCACGACTTTTGC 492966 28 100.0 34 ............................ ATAACGCGATGATCACTGATAACGCCCACGTCTA 492904 28 100.0 33 ............................ GAGATCGAGGCTCGCGGCCCAGAGTGGCAGGCC 492843 28 100.0 33 ............................ GTGCGGTCAGTCGGATACTAACCCGCCGAAGCT 492782 28 100.0 33 ............................ CTGCGTAGGCGGGGTGCGCGGCGGCACCGGATA 492721 28 100.0 33 ............................ CCGCGCACCCGCCCACATCACCGAATCGGGCTT 492660 28 100.0 33 ............................ GGTCCGTGACCACCATGGAATCGCGCCGCTGGG 492599 28 100.0 33 ............................ TCGCTGACTGGAGCATCGACGCCGAGGGACGAG 492538 28 100.0 33 ............................ CCACTTGGACCCACGCGGGCCGGTCTCACCGCG 492477 28 100.0 33 ............................ CATCTGGATCGCTTGATTTTGCTTCAGCAAGGA 492416 28 96.4 33 .......................A.... GGCACGGCGGCGCTTTATGGCGGCGGCGTAAAG 492355 28 100.0 33 ............................ GTCGGCCCCTACCTCGTCCGAGAATACGAGCGT 492294 28 100.0 33 ............................ CGCCGAGCGCGCAGCGAGCCAGCCCGCCGCCCT 492233 28 100.0 33 ............................ CAAGGAGGAAACATGAAGGACTACTACAAGGTG 492172 28 100.0 33 ............................ TACGCCGGGCTTCCCCGTGCCACGCTCCTACGC 492111 28 100.0 33 ............................ CGCGATCGCGGCGCGGCCCTCGATCAGCAGGTG 492050 28 100.0 32 ............................ TGTCCCGTATAGCTAGCTTGGCAGCCCCTGTA 491990 28 92.9 33 AG.......................... CTGTTCGAGCAGATTGAAGGCAAGGTGGATTGG 491929 28 100.0 33 ............................ GGGCTACTGCAACCTGCTGCACAAGCGCGCCAC 491868 28 100.0 33 ............................ GCAGGAGTACATCCCGTGGCAGGAGGCCGCGGA 491807 28 100.0 33 ............................ CTTGCGCGGGAACGGGAACATGCCCAGCGCAAA 491746 28 100.0 32 ............................ CGTTTTCCCGCACCGCCAGTACGCGGCCACGT 491686 28 92.9 32 AG.......................... CGTTTTCCCGCACCGCCAGTACGCGGCCACGT 491626 28 85.7 0 AG........................TG | ========== ====== ====== ====== ============================ ================================== ================== 24 28 98.7 33 GTTTTTCCCGCACGCGCGGGAGTGGACC # Left flank : TGTTGGATGGCGGTAAGACAGAGCTATCTGGAGGGTGGCTTGCCGCCAATGGCATCGTATTTAAACGAATCCAGGACGCCCCTCCCGTCAGCGTTGAGATGATGCTTCACGCTAGTAAAGGATGGCAGACCTCCCCAGAGCTTGGAGCATCTGACCATATTCTCGACCGGCTCTCGGATACAGCGCCCGACACGGTAAGAGTAGAAGAATATTTACCTATTGCCGTGGGCATAGCCGTGTCAGGGCGCCCATTGGCCCAACACGGAGTTGCTCATCTCAAAGGCCGAAAGAGGTTTCTTCCGCGCCCGACATATCCAGTAAGTTTATGGACTCTAGAAGTTCTATCGAGGAGACACCGTGGTTCTGGCCTGATAGCGGAGGAGGTGACGCGCGGGAAATTTAAGACTGTTGCTCCACCGGCCGTAGTTTAGTTCGTTCAAGGCGAATAGAAGTTGAATCTATACGCCGTGTTTGCTCGCTAAACCTGCTGTTCGCAGAGT # Right flank : CAAGCTCCTGTGTTTGCCTAGAAATCCAGTCGAGTTTGCCGAGTTCACCAAAAATGTGACCCATTGTGGAGCGTAAGGGGCATCGCAGCGCAAGGTGTCCATCTGTCGCGATTATGCTCAGCTGTCACCTCGTTGAAAGCATGCATGAAGCATCGTTTCCTGAAGCGGTTGTGCCTTGGCGGCGATGCTGATCTGTTCCTTGTAGCTTGTACGTCTGTGACAGGAATCGGTTGCTTGGCACTGAAGACTCTTTCTTACTGTGGTCGGGGTGCATATGGGCGGCCACCGATTACCGATCTAGATCTGAATACCACTTATCTAGTGATGTCCCAGTCCAGTTGAGTGGTTTTCCAGAGCGTTTTAGGTAAAAATTTGATCCCTCCCGCGTTAACTATGCCGTGGTCGTAGCGATACTTCGTTTGGGCTTCAGCCTAGAGTACGGCGGGTGCCGTTTTCAGAAGTGCTTGAATGGGCTGGTAGAGGAATAGGTGCGGCCCTAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACGCGCGGGAGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 391234-390229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUTO010000003.1 Corynebacterium sp. TAE3-ERU30 Seq3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 391233 29 96.6 32 ............................G TAACGATGACCGTGGAGGGGTCGGAGGCGAAC 391172 29 96.6 32 ............................G CCCCAACCCAAGAAAGAAGAAAGCATCGTGAC 391111 29 96.6 32 ............................T ACGCACTCTCCAGGGGTAGAACGACTGTTCGA 391050 29 100.0 33 ............................. ACTGCCAGCCACCAGCTGGTGATGAGCGGCGAA 390988 29 100.0 32 ............................. CACGCTCGCTGCTACCCGGCGCGCCGTATCTC 390927 29 100.0 32 ............................. AGCTCAGCCTCCATCTCATGGGTAATCCGCGT 390866 29 100.0 32 ............................. ACCATTAAAGCACACTGCTTTACTCCTTCGCA 390805 29 96.6 32 ............................G ACTCTCCGCAGACCTTTGCCGACGGTCTACGT 390744 29 100.0 32 ............................. AAGGGGCTATACGAACACCGCTCGTAGTCAAG 390683 29 100.0 32 ............................. AAGGGGCTATACGAACACCGCTCGTAGTCAAG 390622 29 100.0 32 ............................. TACCAGATCACCGAAGCCCTCGGGGAATACGC 390561 29 100.0 32 ............................. AGGCTGAAGCTATCACTGCCGAACACTACAAC 390500 29 96.6 32 ............................G TTTGATAGCGAGGTCGTAGCGGATGGCTCGTT 390439 29 100.0 32 ............................. TCCTCGAACTCGGTGTCTAGCCCGTCACGGCT 390378 29 100.0 32 ............................. AATGACTGCACATAACCTCGAACGAAAACACA 390317 29 96.6 32 ............................G TTCCTCGGCCATCGTGGGGAACTGCGAGCGCA 390256 28 89.7 0 ........G.-.................T | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTTTTCCCCGCACACGCGGGGATGAGCCC # Left flank : TGTCCTGACCGCGGATGCGGAGTTATTGCTATGGAGTGAATTGGAGCTTGTGTCCTCGGGTGTTTCCTGGGCTGAACCGGCGAGTTCATCATGATCGTTCTCGTAGTAACAGCGTGTCCTGCAGGCTTACGGGGAGATCTGACTAAGTGGCTCATGGAGATTGCGCCGGGCACGTTTGTGGGAACTCCTTCAGCCCGGATCCGTGACCTGCTGTGGGATAGGACCGTAGGCCTCTGTAAAGATGGACAAGCCCTTCTCGTGTATTCCGCTGACTGCGAGCAGGGCTTCGAATTCAGGACTCATCGCCACAAATGGATGCCTCGTGACTTCGAAGGCCTGACCTTGATGGTTCGCCCTGGAGCGACGGACACTCCACGGCGACGTACTGGATGGAGTAATGCCCGACGCCAACGCCGCACTTACAGATCGAGGTGAAAACTTCCCACTACAAGTTGTAGCTATTCTGAGCTAGGAGCTAATATTTCACCAGCTCACTAAGT # Right flank : TACCATCTCGTGTGGCCTAGCCCCGCTACCCAGTTATCTCTAAGGACTGCCACCGGCTGTGTATGCAGAGATAAAAGCGTGCGCTACGGGCTGCGAGGCGTGCGTGGTGTCTATTGCGCGTCGGTGCGCGGCGTGGAGGCCGCTCTCAGCCCGCACTGCCGTGTCGCTGTTGGGTGAACTGGTTCCGGTGGCACAGCCACCATTCAGTTAGTGGGCCTAGGCTCTTGTATTTGAGTGCTACAGGTGAACATCGTGTGGTGCGTGAATACGGGCCAGGATGAGAGTGCTCAAGCCAGGATACCTAGACTCCCCACGATCACCTTCTATGTCCTCAGTCATACTCATCGTGTGTATCGATCGCACAGGCGCCCAAAGAACACCACCTCAGAGCACGCCCCAAGAACAGCTGTCACCTCAGCCTGTAGCAGTCCCAGCCACAGATGGGATGCGGCGGTGGTGTCGCGGTATAGGCAGCCGTCGTGGGCGGCGCGCGAGGAGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //