Array 1 81311-76720 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQA01000036.1 Vibrio cholerae strain A111010Z3 NODE_43_length_96931_cov_31.540354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81310 28 100.0 32 ............................ GATCACGTTGCCCCATAGATTTTTGAAAAAAT 81250 28 100.0 32 ............................ TAGAACACTTGGCTTTATTCGCTTTTTGTCAC 81190 28 100.0 32 ............................ TATCACCTTGAGTCTTGAGTTGAACTCTTCTT 81130 28 100.0 32 ............................ AACACTCAGAGATTGCTGGCCGTCATCCTCAT 81070 28 100.0 32 ............................ TCACATGCGGTTACGCTATTCCAGCCTTTATT 81010 28 100.0 32 ............................ TTTACGACACGCCATTAGCGCATCATTGTGAT 80950 28 100.0 32 ............................ TCTATTGTTGAGCACTAGCTTGCTGCATGGGT 80890 28 100.0 32 ............................ GACCTCGAAAGCATCATCAAGAACAGTAAAAG 80830 28 100.0 32 ............................ AGTAAGCCGGGCGAAGACACTCCTTTTGTGCT 80770 28 100.0 32 ............................ TGATAAACGGCATAAGGCACTTCAACAAACTC 80710 28 100.0 32 ............................ ATTGGTTAGTAATGTTGCGGCTACATCTGTCG 80650 28 100.0 32 ............................ ATTTGCACATTACTTTTCATCATGCGGAATAA 80590 28 100.0 32 ............................ TGTAAGATCTAGAGAGCCTCCGTACTGTTCAA 80530 28 100.0 32 ............................ TTGCCAATACCGATCCAGACTTCTAATTTTGC 80470 28 100.0 32 ............................ TTTTTATAGGCGTCTAACAGTTCAGACTGATA 80410 28 100.0 32 ............................ ACTTTCATTAGAAGAAGGCTCGGATGAAATTC 80350 28 100.0 32 ............................ CTAATGACCCATTAGCAGGTGCAATTGTGACT 80290 28 100.0 32 ............................ TCCGGTGATGTTGTTCTTAAACAGCACGTTTT 80230 28 100.0 32 ............................ TCACGCTGCTGCAGCATCTCGTTGAGCTTGCG 80170 28 100.0 32 ............................ TACGTTTGACTCTTGATCTTCATCATCACCGG 80110 28 100.0 32 ............................ ATTATGAGGCTGAATGGATGGAAAGATATTGA 80050 28 100.0 32 ............................ TTTCTCGGTGCGCCGAACCTGCCGAAGTTTGC 79990 28 100.0 32 ............................ TCGCTTGTGCTCATCCGCGCTAGAGCCGTTTT 79930 28 100.0 32 ............................ AAGCGCTGAAAATCCTCGCACCCCGTGTGCTC 79870 28 100.0 32 ............................ TTTAGAGTGGGCTTTGTATTTATCTACCGCTC 79810 28 100.0 32 ............................ GGAACGGAAACATCCCCTGTGACTTTATCAAT 79750 28 100.0 32 ............................ GGCACTCGTTACCCGCCACGCCGGATACTGTT 79690 28 100.0 32 ............................ TAAATTAACCTTGACGGTTAATGATTTTCTGT 79630 28 100.0 32 ............................ TAACTTAGTTATCAAGTACACAATTGACATGC 79570 28 100.0 32 ............................ ATATCGCGTCTGATCACTAAAGATAAAGTCAC 79510 28 100.0 32 ............................ TTTGAAGATGGCTATATCGCCGCGCTTAACTT 79450 28 100.0 32 ............................ TTGATCTGATTTAGCGCGTACTTTAAAGGCTC 79390 28 100.0 32 ............................ ATGCATCAATAACAAGCTGCTCACGGCGGCGT 79330 28 100.0 32 ............................ ATTGTTTGAGCAAGTGGAATGTTGTCATAAGC 79270 28 100.0 32 ............................ TATAACTACGTGCCGCGCGAGTATCAAAGAAA 79210 28 100.0 32 ............................ TTTACGACTTCAAAGCAGTTTCCGCACTTGTC 79150 28 100.0 32 ............................ TCATTAAATGCCGCCGTTTCTTCTCGCTTCGC 79090 28 100.0 32 ............................ AGAAAGCAGTTTTTGTACCCGTCCGCCTCTTC 79030 28 100.0 32 ............................ TGAGATTGCTTTACTTGGTTTACATGCAGATA 78970 28 100.0 32 ............................ AAGCTTTTTCAGCATAGCGGCAGTCAAAAAGA 78910 28 100.0 32 ............................ ATCAGGAATGCAAAAGCAATCGGGCAAGCTGG 78850 28 100.0 32 ............................ TTGGGTTTTTGCTGTGTCTACTACATCACGAA 78790 28 100.0 32 ............................ AGTATATTTAGCATCGCCATAGCAGCGGTCAG 78730 28 100.0 32 ............................ ACTAAAAACTATTGCCCGTTGTGGCTACATCT 78670 28 100.0 32 ............................ TTAATGCCTGCTTACGTTAAATCTAAGCATGC 78610 28 100.0 32 ............................ ATTATCACCGCCTGCAATGTTCCGGTGATAGT 78550 28 100.0 33 ............................ TCCAAGATTGCACACAACTCAGGTGTATTTGTT 78489 28 100.0 32 ............................ CTCGATGCTCGCGCCGCTTCCGCCGCTGGACT 78429 28 100.0 32 ............................ GTCTTTAGACGTATCATAAGATTTATTGGCAT 78369 28 96.4 32 ...........T................ GTTACCCACGCCATAAACTTGCGAATGATGAT 78309 28 96.4 32 ...........T................ GGAACCTTCCGTGGTGAGAAGGTGGAGCGCAT 78249 28 96.4 32 ...........T................ TACATCAACCAAGCACTGGAACAAGCCGACGA 78189 28 96.4 32 ...........T................ AACGTGATGGTATGGATCGAGTAACGCTTCTT 78129 28 96.4 32 ...........T................ GTGTTGAGCTTTCAGAACACGTCAATTATGAC 78069 28 96.4 32 ...........T................ TAGATGAGCCTGTCGTCGAAGAGCAACCAATT 78009 28 96.4 33 ...........T................ GATAATGGCCATCACCGAACAAACAATCTTTTT 77948 28 96.4 32 ...........T................ CATACGCTGAAATGGTGTTTAGCAAACATCAC 77888 28 96.4 32 ...........T................ ATCCAGTTGCAAGCTCAAACTGCTTTTTGGAT 77828 28 96.4 32 ...........T................ ATACGAGATAGCGCCAGCATTTGCATAGTTTG 77768 28 96.4 32 ...........T................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 77708 28 96.4 32 ...........T................ AGAAGAAAAACGCACATTCGATATTGATTCTC 77648 28 96.4 32 ...........T................ CTAAGCTCACATCAACAGACAGCTTACATAAT 77588 28 96.4 32 ...........T................ GAGCGTCGTGCTCGCCGAGATGCAGACAGAAT 77528 28 96.4 32 ...........T................ GCTACCCAAAAGCTTTCTGTTTTCATAAAATC 77468 28 96.4 32 ...........T................ AGTGAATCAATCTGCGAATTAGATCTGCGTCC 77408 28 96.4 32 ...........T................ GAAAAAGCGAAATCAAAGGGAGTGAGTCTCCG 77348 28 96.4 32 ...........T................ CGTTACCAAGGCGGTGGCGACACGAGAAACGG 77288 28 96.4 33 ...........T................ ACTGACGTTTATTCTCTGGCCTTTCCGTTATGT 77227 28 96.4 32 ...........T................ GCAAGGGGGAGGGTGGGTCAAAACCTCCCTAC 77167 28 96.4 32 ...........T................ TGTTAGCAGTGCTTGGAAATCTCAAGAATCCA 77107 28 96.4 32 ...........T................ TGAAAGGATTGTTTTGCGGTTTAAGCCCGTAT 77047 28 96.4 32 ...........T................ CACTGGCAGCAGCACACCATTCAATCGCACAT 76987 28 96.4 32 ...........T................ GACAACCCAAAGCGCAGCCTCACCCCACTTGA 76927 28 96.4 32 ...........T................ AGAGCGGAAAGCTCAGACATCATTCCAGATGG 76867 28 96.4 32 ...........T................ GCTAGTTCAGAGCTTGCAGTGACCGTCACCAA 76807 28 96.4 32 ...........T................ GCTGGTAACATTACAGACCAAACCGATCAGAC 76747 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 77 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //