Array 1 130882-130324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000001.1 Listeria booriae strain FSL L7-1299 NODE_1_length_459768_cov_59.249967, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 130881 30 100.0 36 .............................. ACTTTTGCCTTTTTGGATTACGAGGAAGTTAAGTTA 130815 30 100.0 37 .............................. ATGGGAAACTATGCCGTAAGTGCTAGGGCATACCTCG 130748 30 100.0 36 .............................. AAAAAATTGTCGTTGGTTAATTCACGGGGCGATACG 130682 30 100.0 36 .............................. TTGCATATGAGCGAGAGATTTTATTAGGAGGTCAAA 130616 30 100.0 36 .............................. TACTTCGATTATGAACACTTTTGGTATAAGATAATT 130550 30 100.0 35 .............................. TGTTATTTTTCGGCCAAAAGACTTACCGAGTGAGA 130485 30 100.0 37 .............................. CCTTCCATGTGACGCTTTGGCGCAATCGTCCCGTGTC 130418 30 100.0 36 .............................. ATTACTTTTAATAGCTCACTTAGTTTTATCTGATCC 130352 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAGATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTTTTGTGGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCACTTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 63519-64066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000008.1 Listeria booriae strain FSL L7-1299 NODE_8_length_182511_cov_58.897392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 63519 30 100.0 36 .............................. ATTTTGAAGGCGGTTCTTCCAATCGTTGGAGGGATT 63585 30 100.0 36 .............................. AAGGACAAACCAAGTGGGATAGAGACCGCAAGGCAC 63651 30 100.0 36 .............................. ACTTTTGCCTTTTTGGATTACGAGGAAGTTAAGTTA 63717 30 100.0 36 .............................. GCTATTTGAACAAGCTCAGTTGGGGTACACTTCCGA 63783 30 100.0 35 .............................. AAGGACTAAGCGCTAAGCTAAACATGCCTGCCCCT 63848 29 96.7 36 ..........-................... ACCTCTACAGAATCCTCAGTTGGGGAGTACTCGCTT 63913 30 100.0 37 .............................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 63980 30 96.7 27 ........................A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [64037] 64037 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAATGACGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATTGGGTACCT # Right flank : TTAGTTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAATAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATTTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCGTCATGTTTCTGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1087-1380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000014.1 Listeria booriae strain FSL L7-1299 NODE_14_length_64977_cov_53.689638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1087 31 100.0 34 ............................... CCGAGCCTTGCTGGCATGATTCTGTCCATGAAAC 1152 31 100.0 35 ............................... TGTTTTGTCATTATAAAACCTCCAATTTGAATTTA 1218 31 100.0 35 ............................... GACATCCTTCAAAGTGAACATGCCCTTATCAATAA 1284 31 100.0 35 ............................... GATACCACCCATCGCATTGAAGGATACGCCAATTT 1350 31 96.8 0 T.............................. | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 AATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CAGCTCAACTCCCCTATTATTAAGAGCAAGTTCAAATAGCTCAATGAAACTAGTAACAAGCAGAAAGGTTACAGCTACGATGACAAAAGTTAGCAAGGCAAGTGCAGCTGTTGATCGGACTAGGATTAGTTCCAGGTCTTGGTTGGATAGCCGCGGCATTTTCTGTGTATGGTATTATAAGCGAATTTAAAAATAAGACCGCTTACATTATAATCAAACAATACGCCAACAATCACCAGTATAGGAATGATTTGTATGTTTATAAAGATAGCAAACGAACAAAATTATTAAATAAACAAACTGGAATTCCACAAAGACATTTTTCTTAAATGAATACATTAAATTTATGAGGCTGGTACTTTAAGTATCGGCTTTTATTTTTAATACTTAAGCTAGCCTCATATATTCAGGAAATGTGCAGATAATCGCCTATGGGCTATGTTCGCATATTTCTTAGGTAAAAACGATTAGGCGTCTACATCATGATTATTAATTGACTT # Right flank : CTGGTACCCCATCAACGCTTACTTCCATCATACCTCAAACACCCGAATCTGTCGACAGGCAGCCAAATCCTAAATTTCCACTCTCAAACCTTACAATCTGAACTTCGAAAATAGGCTTAAACTCTTTAGTCCCAATACATAACAAAAATCTGTCGATGCCCCCATTATTTTGCACTACTGGAGGTCGACAGATTTTTTCCGCGTTATTATGAATCAAGGCTTTCTGTAGAAATTATCTTGTTCTTCCCGTCTTGCACAATCATCGCGCTATTCGCAGGGATTATTTTCTTTTCGTATTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTTGTGCCGAATGTTGTTTTCTGAATGAGGCGTTCTTTATCTAGCACTTCAAATCAGGCTTCCCATGCTAAAATGCTTCCTATTTTTAATATTATTGGATGCATTTTGGAATAGTCGTCATGGATTTAGTTTACGATTTAATCTTAAGAAACTGATCATTTTTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 5814-4933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000014.1 Listeria booriae strain FSL L7-1299 NODE_14_length_64977_cov_53.689638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5813 30 100.0 34 .............................. ACTTCCCTACCTGCTGGATATAAGGTAGTTGATA 5749 30 100.0 36 .............................. ATATCAGGCTTCGCAGATTGTTAAGAATAGGACTTT 5683 30 100.0 37 .............................. ATGATGGCTGGTAAAACTATCAATTATTCTGTAACTA 5616 30 100.0 34 .............................. AGGCGGGAACGTTGCGACTGGAAGAAGACGAACG 5552 30 100.0 36 .............................. GTTAACTTAGCAAAGCAGCGTTTAAAGAAGATAAAA 5486 30 100.0 35 .............................. AAGACCGTAACCCCACTTTCGATTACGGCAATTCC 5421 30 100.0 36 .............................. GTATATACGATAGCTTTTTGTGCTGCAGTGTTTAAT 5355 30 96.7 35 ............G................. AAACTTAGTCCGCAATCTAATCAATTGCGATTTAA 5290 30 100.0 35 .............................. GATGAAGCTACTAAATTAGTTACAGAAGTTATTTC 5225 30 100.0 35 .............................. ATGTAAATAATGCTAAAAAAGATGGTAGCTTCCTA 5160 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 5094 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 5028 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 4962 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 96.4 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTAGGGTTTGCTGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAGGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : GCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAGAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACTAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 227686-227451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000004.1 Listeria booriae strain FSL L7-1299 NODE_4_length_316437_cov_59.454045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 227685 36 100.0 30 .................................... TTACCGGCTACAATTGTAGACAAACGAACA 227619 36 97.2 30 ..........C......................... GCGCAAAAGGTGCTGGCGTTAACTTCAATG 227553 36 100.0 30 .................................... CGAGTGATACAAAAACATACGCCAAAGCGA 227487 36 86.1 0 ..........................TG.A..C..A | A [227456] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCCTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTGAATAGTAATTTCCCGTACTAAATCAACAAAAAAACACCATAAACCGTATCTTACACAGCGACCTACAGTTTTTCCCGTTCTTTCTTATCGGAGAAACGGGGATTCTGATGGTTGGATGAAATGTACTCGTTGTGCTGGTGCTGGTTTCAACGCTTATAATGTTGGCTGCGTGGCAATTTTGTGGCAAATAATTTTAAGATGGTGAGAGGTTTTGTTCGTCATCTTCTTTGTTGTGTGCTGACTTGTTCTCTTCACAGCCATTGTAATTGGAAATATTATTCCTCACTTATACACAGCAGAGGTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATCATGCATACAAGTACAACGGAACAGACAGTAGTTTTAGTCCTCTTCTGCTTTGAGGTAATATACTCACCTATTTCACATACAATAACATA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 231481-231114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000004.1 Listeria booriae strain FSL L7-1299 NODE_4_length_316437_cov_59.454045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 231480 36 100.0 31 .................................... AATTTAAAGTTGGCGATCGCGTGCAAGTAAT 231413 36 100.0 30 .................................... GTGCTTTTGCAGATACTGGAGCATCACAGG 231347 36 100.0 30 .................................... GGATATTTAAAAGCCCGACATAGTTCGATT 231281 36 97.2 30 ......................G............. AAAAATGGAACAACGCTTACTTGTTGCTGC 231215 36 100.0 30 .................................... AAGGCGCATTAGATAAATTGAATACCGCTG 231149 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.7 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAAACTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCCACTCTCTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 44142-43717 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSH010000017.1 Listeria booriae strain FSL L7-1299 NODE_17_length_46888_cov_56.900002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44141 30 100.0 35 .............................. AAGGCATACTTGCGTGGTGCGATTGCAAAGGCCAT 44076 30 100.0 38 .............................. CAATTCTATCATATATGGCAAATGATTCAGGAGAATCA 44008 30 100.0 36 .............................. TACTTTTTCTACGTCCTTATCGGTATATCCAATATT 43942 30 100.0 36 .............................. ACAGTGCTAGCTAGGCGTGAGGCTCCTTCGTCATAA 43876 30 100.0 35 .............................. GTCGGATGTGCGATCATACTAAAAGAATTCTTCCA 43811 30 100.0 36 .............................. AATCAATTGCACACCTGCATTTAAAATTTGAGGCGC 43745 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGATGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCGGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATAATTGTGCAAAACGGGAAGAAAAATATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGAGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : AATAGGGCATTAGTAAAACGAATTGAATAACAAGAGGGTTAATATCCATTAATACTGAACAATGGATATTAACCCTCTTAATCTATTGGCCTCTATGTTGAAAATTTTTAGTATGCAGTTAACAGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACATTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCGAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTCGCATAATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //