Array 1 53770-55445 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000015.1 Marichromatium gracile strain DSM 203 Ga0244650_115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53770 29 100.0 32 ............................. TGGCAGGACCATCATAGAGATCGACCGTGATG 53831 29 96.6 32 ............................G CTTGCCCACTTGCGCTCCCATTTACGGACGGC 53892 29 100.0 32 ............................. TTGGCGGCAACCCCAGCGAAATCGAATCGCTC 53953 29 100.0 32 ............................. GGGAAGGTCACGCGCGTTGCAGTCACACCATT 54014 29 100.0 32 ............................. CGATCTGCCTTCTTGACCCATTCGACTCGAAC 54075 29 100.0 32 ............................. TCGATCTCGTTCAATTTCAGGCGCAACTAGGA 54136 29 100.0 32 ............................. AGCGCCGGAATGCGGGAGATGAAATCAGGCGC 54197 29 100.0 32 ............................. TGTGAGTGTCCCGAGGCCCAGCCCTGGAATGA 54258 29 100.0 32 ............................. CGATACCCGCACTCGGCCTTGAGGATCTTCTT 54319 29 96.6 32 ............................T GTGACGACTTATGCGCGGTTGGTGCGCGAGGC 54380 29 100.0 32 ............................. GGGGTGCGGGTCAGGGTCATCGATTCGAATGG 54441 29 100.0 32 ............................. AGGTGGCGACACGGGCGGCGACACAGGTGGCG 54502 29 100.0 32 ............................. GGCTGGGGCTGCCGCTGCTACGTCGAGAGCCT 54563 29 100.0 32 ............................. CGGGCCGGCTACACGACCGGCCGCACCGTCCA 54624 29 100.0 32 ............................. GCTGCACTCGTCGCCGGCCTTGAGGTCGGCGC 54685 29 100.0 32 ............................. TACGACACTGGCGCAATCAGCGTGACCTTCTC 54746 29 100.0 32 ............................. CGCGCATAGGTCGTCACGTTCGCCGCGCTCGG 54807 29 100.0 32 ............................. GTCGAATGGTCTGCTGCTCTTGCATCTGGATG 54868 29 100.0 32 ............................. CGTTTTACTTCCGTCTGTCAAGACGAGGCCGA 54929 29 100.0 32 ............................. AGGCTGGCGAAGTCGTGATCCGGTTTTGTGGC 54990 29 100.0 32 ............................. GTGCGGAACCCCAGGCCGTTGATGGCGTTGGT 55051 29 100.0 32 ............................. GTGAATACCCCGATCGAGATGGGTGGTCGTGC 55112 29 100.0 32 ............................. CCGAATGATGAAGGTTCCCCGCCAGTGGACCC 55173 29 100.0 32 ............................. TGGGCACCCGATGCGCGCGTGCAGCTCTGCCA 55234 29 100.0 32 ............................. GGAGTCGAACTGCGCCGCATCGACGATGGTCG 55295 29 100.0 32 ............................. GAGCGCTGGCCGCCGGCCTCGCGGTCGAATCC 55356 29 100.0 32 ............................. ACATCACCCGCCGCCCCCCGTCCGACTCCGGC 55417 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Left flank : GCCAAGAAGGCGGAAACCGACTCCCAGACAATCGATAGGCTCGTCAGGCGTGAAGCGGCTACCGTGTTCCGCAAACAGGGAGTCATTCCTATGATGATCGAGCGGATCAAACAAGTTATCCGCATGGAGGAAACCGATGCCTCTGGTCATGGTCGTGACTCGTGACGTAGCCGATCGGTATCGAGGGTTCCTGGGATCGCTAATGCTAGAGGTCGCTCCAACGGTCTACATTTCGCCACGAATGAACTCCGGAGTTCGCGTTAGAACCTGGAATGTTCTCAGCAATTGGCACAAGAGCGAACCACAAGGAAGCATCGTTATGGTTTGGCGCGATGTAAGCGCGACAGGTGGAATCGAGATCGCCACGCTCGGCACACCACCGAGGGAGCTAATCGACGTCGATGGCCTGTGGCTAGTGCGCAAATCATCGTAAAAAGGCTCTTTAAAAACAAAGCCCAATCACCGCTTTCGCAATTAATTACAAAGACTTAAGCAAAAGA # Right flank : TGAGGTTCCCCCGAGATTCGCCGCCTACTCGAAGCGTTGCTATGGCACGGACGCGCCCCGCCTGAAGTCATCATCGCCTAGCCTGATTGGCGATAAAGGCATAGGGCTCGTGCGAAAGCTTGCCACTATCGAGTACACGGAGTTGGACCACCGCGAACATGCGCGGCTGTAGCAGTAAGGGTTATGTCTCTCCCCATCGCTCACAGCCCCCCACCTGCCTCCACCCGCCCCGCCCGCAGCAGCGGTTCGAGCTGCTCGGCGGGGAGCGGGCGGCAATAGTAATAGCCCTGGGCGACGGTGCAGTGGTGGGCGAGCAGGAAGCGGCGCTGGGCCTCGGTCTCGACGCCCTCGGCGATGCGTTCGAGGCCGAGGTTCTCGCCGAGGCCGATGATCGCCTTGAGGATGGCGATGGCCTGACGGGGGAGTTCGGGACGCTCGTCGATCTCGGCGAGGAAGGAGCGGTCGATCTTCAGCGAGTTCACCGGCAGGCGGTTGAGATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCTCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 165394-169573 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000004.1 Marichromatium gracile strain DSM 203 Ga0244650_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165394 29 100.0 32 ............................. CCACTATGTTCATCGCCGGCCAGGAATACAAG 165455 29 100.0 32 ............................. TCTTTAGGGCTTCAGCTCGTCGACAAGATCGG 165516 29 96.6 32 ............................A GCAGCAGCGTCGTGCCGCGTTGCTGGTCCCAG 165577 29 100.0 33 ............................. CACGGTCGGCGAAGAGGGCCAGGGGTCGCGTCA 165639 29 100.0 32 ............................. CCCTTCGCCGGCCCCTGCCAGGTCACCGTGGT 165700 29 100.0 32 ............................. CGCCTGCCCGACGGCGACACCATCAGCGGCGC 165761 29 100.0 32 ............................. CGTCTGTGCAGCAAGGCATCGCTTGAGACGCG 165822 29 100.0 32 ............................. TCCCGGCGGGTCATCGTCGATGGCGCCGCGCC 165883 29 100.0 32 ............................. CCGTCGAACGCGGTGTTGGGGCGCCCCGGGTT 165944 29 100.0 32 ............................. GCCAACTGTGCTTCGTCAAGTCTGCACTGCCC 166005 29 100.0 32 ............................. TCTCCGGCTCGATCACGCACCACTGAAACAGG 166066 29 100.0 32 ............................. ATCATGACGCCGGCCACACAGATGCACGAAGC 166127 29 100.0 32 ............................. TTTGTGTGCCTGGCCCATACGCGCGCACGGTC 166188 29 100.0 32 ............................. GCTATGCGCGCGCCCGTGCTGGTCCGCGTGAG 166249 29 100.0 32 ............................. GTCGAGGCATTCATCCTTGGTGATCTGGTAGA 166310 29 100.0 32 ............................. GCCTTGTTCGGCGCACTCCTGCTCGAGCGTGG 166371 29 100.0 32 ............................. GTAATCCATCGCTTCTGCTCTGGCGCGTAGTC 166432 29 100.0 32 ............................. TGCGTCCTGGCGGTCTGGTCTGCCTGATCGTC 166493 29 100.0 32 ............................. CAGGCCGTCGCCAACGGTCGACCAAGCGCCGG 166554 29 100.0 32 ............................. CAGTGCTTGAGCGGCGTCAACGTCCATGTCTG 166615 29 100.0 32 ............................. TCGAAAAGGTTGCCGAGCGCCTGGCGCGGTTG 166676 29 100.0 32 ............................. GCGCTATCTGGTGGTGTAACGCTTAAAACGCA 166737 29 100.0 32 ............................. TCCGTTGGCTCCGGTTTCCAGATGCGTCTACG 166798 29 100.0 33 ............................. GACTTTTCGGATTGGCCTTGCGCTGGTCGAAGA 166860 29 100.0 32 ............................. GCTTTGCGCGGCTTGGTGTAGAGCTTGCGTGC 166921 29 100.0 32 ............................. TAATACGGAAGTGATGCGAATGTAATGCGATG 166982 29 100.0 32 ............................. CTCGCGGGCGCGTGTCCATAGCCACGCATATC 167043 29 100.0 32 ............................. GCGCGCTCGCGAACTGCTTTGGGATACGCGCG 167104 29 100.0 32 ............................. GCCATGTCGAACTCGAGGGGGGTGTCGACGTC 167165 29 100.0 32 ............................. GCAGTTCTCCGCGCCGCGCCTTCGCCTTCGCG 167226 29 100.0 32 ............................. GCCTGGGCCGCAGAGCGCGAAGAGCAGATCAG 167287 29 100.0 32 ............................. GCCGGGACGCGGACGTGGCGCGGCTGCGAGAG 167348 29 100.0 32 ............................. GCGCGGACGGATCGGACAATCTCGACGACGGC 167409 29 100.0 32 ............................. GTCGAGCGCTTCACCGGGCTTCGCGTCGGCAG 167470 29 100.0 32 ............................. CAGCGAAAGGCGATCGAATAGGGTAGACATAG 167531 29 100.0 32 ............................. TCGTACAAGCGATTCTTGGCGAACTACGATGA 167592 29 100.0 32 ............................. ACATCCTTTGGCCCGATTTCAGCATGAAGGCT 167653 29 100.0 32 ............................. TCTCGCCCGAGCATGCGGCCTGTTTCCGCGTG 167714 29 100.0 32 ............................. GAGCACCACCAATGACCAACACCACATTCCGA 167775 29 100.0 32 ............................. TTGTCGATCAGCCGGGATCTTCTCGATCAGCC 167836 29 100.0 32 ............................. CGCGCACACGCACACGCGCCGCTCGCGCACGC 167897 29 100.0 32 ............................. ATGCCGTGCCGCCCTGCAATCTCGCGCAGGCT 167958 29 100.0 32 ............................. TTCGGTGCGGTCGGGGTGTTGCGTGTGCCGGT 168019 29 100.0 32 ............................. ATTGCGGCTGATCTGCTGATAGCCGAGCACCG 168080 29 100.0 32 ............................. AAAAAATGGCTGAGGCGTGGCCCGGTCGTGTG 168141 29 100.0 32 ............................. CTCGGCCAGGCGGCGGCGCGTCTTGGCCTCGT 168202 29 100.0 32 ............................. TTCGGTGCGGTCGGGGTGTTGCGTGTGCCGGT 168263 29 100.0 32 ............................. ATTGCGGCTGATCTGCTGATAGCCGAGCACCG 168324 29 100.0 32 ............................. CCTCGCTGACCCGGCGAGGCACAACCCACAAG 168385 29 100.0 32 ............................. TAATGGGCTTTCAGACTACCGTCATTGACGAT 168446 29 100.0 32 ............................. CAGGCTGGCAGACCTGGAGCGAGAGACACACA 168507 29 100.0 33 ............................. CGATGCTTTGTTGCACAGGCGTTTGCGACTCAT 168569 29 100.0 32 ............................. CCATAAACCACCAGGGGTGCACCCCGCACCCC 168630 29 100.0 32 ............................. CTCGAGGTTATCGAGGCCGATCGGCTCGAGAC 168691 29 100.0 32 ............................. GCATTCAACAAGCCGGGCGGGATGTCGTCGTC 168752 29 100.0 32 ............................. GCGTATAACGGCTATCCATACCTAGGATTTCA 168813 29 100.0 32 ............................. CAGGCCGGGCGGGATGTCGTCGTCCTCGCCGG 168874 29 100.0 32 ............................. TTCGCCGACGCACTCTATAGAGGGCCGCACAG 168935 29 100.0 32 ............................. GTCAAGCGGCGCTCTGGCCGCCCTTGCCCTCA 168996 29 100.0 32 ............................. GTGTTAGGCTTCCCTACATGAAAACGACCTGG 169057 29 100.0 32 ............................. CCGCAACTAATGCGCAACCGAGGGAGACCACC 169118 29 100.0 32 ............................. GGCGTCGATTTCCATTCGCCAGGAAGACTTGC 169179 29 100.0 32 ............................. ATCGACAGCTACCAGGGCGACGAATACGTGTC 169240 29 100.0 32 ............................. CCCTGGCATGGCTTCGAGCGCACTTCGACGCA 169301 29 100.0 32 ............................. TAACGACACGCTATTCCGTCCCTGGATCTCGA 169362 29 100.0 32 ............................. TGCGATGTCTACGGTCACGCACTTAATCCGCT 169423 29 100.0 32 ............................. AATAAACACACCGCAACCGTGATCGCGGCCAA 169484 29 100.0 32 ............................. ATGGCGGTGATGCGGCCGGTGACGTCGACGAA 169545 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.9 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : AAGCTGATCCCGATGATCGAGGACGTCCTGGCCGCCGGCGAACTCGCGCCACCACCACCGGCGCCGGAAAACATCCCTCCAGCCATCCCCACCCCGGAAGGACTCGGTGATGCTGGTCATCGTCACTGAGAACATCCCACCCCGGCTGCGCGGACGGCTGGCGGTGTGGCTACTGGAGATCCGCGCCGGCGTCTATATCGGCACCCCCTCCAAGCGACTGCGCGAGTTCATCTGGGAGCAGCTCCTCGCCGGCGTCGAAGACGGCAACGCGGTCATGGCCTGGAGCACCAACACCGAGTCCGGCTACGACTTCCGCACCATCGGCGAGAACCGGCGCATCCCCGTCGATTTCGACGGACTCAGACTCGTCAGCTTCCTCCCCCCACCCCCATCGGACCCTTCACGATGATCGAAAAACCAACCCCTTCGATAGACCCCGAAAATCTGGTAGATTTAGAGGCGCGTATTTTTCTTCGCTGAATCATGCAAATACGCGAAGA # Right flank : GAACATCCTCCCCTACTTGACCCAGCTCACCACATCACCGCACCACCCGCCAGCGCCGCCACCACCGGTCGCCCCACTCGAACAGGGCGAGGCCGGCGAGGATGGTGAGGCTGCCGAGCCAGATCCTCGGGGTCAGCAGCTCGTCGTTGACGAGGTGGCCGAGGAGCAGGGCGAGCACCGGGGTGATGAGCGGGATCAGCGCTACCCGGCTCGCCTGCATGTGGTGCAGCACGAAGTAGTAGAGGATGAAGCCCAGGGTCGAGCCGAACACCGCCAGGTAGAGGATCGACCAGAGCGCACGCGGCGGTAGCGTCGCCGGCGGCGCGAAGCCCTCGGTCAGCCCCCAGCTCAGCAGGAACAGCGGCACCGCGATCAGCAGCGCGCCGGTGGTGGTCTCGACCGGGTGCAGGCGCGTGCCGATACGCTTGATCCAGACCGCGCTGGCCGAGTGGATCATCACCGCCACCAGCACACCGCCTATCCCCACCAAGGCCTGACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60982-61522 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000005.1 Marichromatium gracile strain DSM 203 Ga0244650_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 60982 37 100.0 35 ..................................... CACTCATAGCGGGCGACCCCCATACTTGAAGATAT 61054 37 100.0 35 ..................................... TGTGCAGCGGATCACCAAGCGGAAGATTCCCATGG 61126 37 100.0 36 ..................................... CGTGGTGATTCGGTCATCCCCGGTGTCTTTCATGAT 61199 37 100.0 35 ..................................... CCTAGCGCCGTGCCTCGGCGATCAGTTCCTCGGTG 61271 37 100.0 35 ..................................... GTACTTTCTCACCAAAGCCCGGAACTTGGGGTCGT 61343 37 100.0 34 ..................................... TTGGTGCTGTAGAGGATCGCCGCGTTGTTGGTGA 61414 37 94.6 35 ......................G.....A........ CATTAGACCAGCGTCCAGAGTTACTCGCTGATCTT 61486 36 83.8 0 ............A.T......C........G.G.-.. | A [61514] ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.3 35 GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Left flank : CTGCACCGCTGGCTCATCCACGAGACCTGACCGACGATGGCTCGCAAGCAACTCTTCCTGCTCGCCTATGACATCGCCGATGACGGTCGGCGCAACCGAGTGCACCGCGAGGCCACCGACCTGGGCATCGCGCTGCAATATTCGGTCTTCCTGATCCCGGCGACGGTCGCCGAGATCGATCGGTTCGTTGTACTGATAGGAGGGATCATCGATCAGCGTGCAGACGATATCCGGGTTTACCCCCTGCCTTCCCGACTCGAGGTCTGGCGTCGAGGGCGTCAGTCGCTTCCCGCCGGCATGGCGTTGGAGATGGACGGTCCCTTGGGCGATGCCGTGAGCAGACTTGTCGGGAACCGTGAACTCGATTAAGTTAGAAGACGTTCGAGCCGCCTGTGGAGCCTTCGTCCCTTGCCCTTCTGCACGTCAACTTTTTCTGTCACGAAAAAATTGCGAACCACCCTTGTAGGTGGTTGTTCGGAAAGGCTTTCTGGCAACTGGCA # Right flank : CATCGGCGCAGTGATTGGTGGCACTCTTGCTCGGCTCAGCAACAATAAGAAGCCATAAAAAAACCCGCATCACGCGGGTTTTTTTATGGCTGTTCGGTTAATGATTTCAGATTTAATTTCTGGCTTCCTTTATCATCTCAAAAAATAAATTCATTATTGGCCGGTCGCGGCGGAATTCGAAGATGTCGCGGACATGGATATCAACGGGGGTGCCGTCATCATGATCGATACGAATGACGACCCCGTAGGGGGTTTCCTCCATGCTGATTCTCTCGTTGAAGAACGATTTTTTCAATTTTACGTGTGGAATGGATTTTGTCTTGCTGACTGGAATGTTGCCGTCCGAGAAAAGGAAGAATGAGCTGTTGTAATATTTATTTTCCTGATGATTGTTTGAGTGATCTTTTTTCATTTCGAATCCTTTTTTCTGCTCGTCGTTTTCGATGATTTGGTAATGATTCGATGTCCAAGCTTTTGACTTTGAAAACTTTTGTCTGAGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAGAGACCCGATCTAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 402556-404528 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000002.1 Marichromatium gracile strain DSM 203 Ga0244650_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 402556 32 100.0 34 ................................ ACGAGCTGTATCAGCGACGCGCGCCGGATGATCT 402622 32 100.0 35 ................................ CGGCAACGCTCATCACTCTGGAAGCAATAGCCCCC 402689 32 100.0 36 ................................ ACTATGGTGGATAATGCAATGATCACCATGACACCA 402757 32 100.0 35 ................................ ACCCGGCAGAATTGAGCGCCCCTCAGGCGCAGCCG 402824 32 100.0 35 ................................ CACCATTACGAGACCCTGATTATCGAGTATGCCAT 402891 32 100.0 35 ................................ GCGTGCATCGTCGTCGGCGACGTGCGGGACAAGCG 402958 32 100.0 34 ................................ GAGATCGACGTCGGCCAGTTGCAGCATTCCGGCC 403024 32 100.0 35 ................................ ACCGTGCCCGTGGATGAAACGGTCGCGATCGGCCT 403091 32 100.0 36 ................................ CGAGCGTCTGACGGCGCATGCCTCGATCAGTGTAGC 403159 32 100.0 34 ................................ AATTAACCCCGGTGAGCGTCGTGCGTTGAAGCAT 403225 32 100.0 36 ................................ TACGGGGCGCTGGAGACCAGCCCCGCCCGCCACGTC 403293 32 100.0 35 ................................ TGCGAGATCGCGGCCAGCGCTGTGGCCACCGGCTG 403360 32 100.0 35 ................................ CTCTCGTCGTCGTCGGATAGCAGCTCGCGCAGGAC 403427 32 100.0 35 ................................ GATTACTCGTGGCGCATGCCGCGCATCGACCGCCT 403494 32 100.0 35 ................................ CCGAATGGGCACGAGACCAGCGCCGAGGCAATCGC 403561 32 100.0 34 ................................ GCCGGTGCGGCGCCCGGCGGCATCCCGGGAATGG 403627 32 100.0 35 ................................ CGACGAACTGCTCGGGCAGAGCGCCGAGCCAGGAC 403694 32 100.0 34 ................................ GCCAGTTGCGGGTGGCCGTGGTTGGCGGTGGCGG 403760 32 100.0 36 ................................ GACGAAATTCCCCACCTCGATGGCGGTGGCGGTGGC 403828 32 100.0 34 ................................ CTTACTCACGGTCGCGAGGAAGTGCTCGCGGTGC 403894 32 100.0 35 ................................ GCTTAGCCCGCCGCCACCACCACCGCCAATTCCGC 403961 32 100.0 34 ................................ ATTGGGGCGTATTGCCTGCGGTGCCTGAATCAGA 404027 32 100.0 34 ................................ AATGCCACTGGCGAATACGAAGCTGATAGTTACC 404093 32 100.0 35 ................................ ATCGAAGCGCAAGAGAATTTTCTGGCTTCGCCCCG 404160 32 100.0 34 ................................ GTCGATCTCGCCCTCGGCTCGACCCAGGAAGGCG 404226 32 100.0 37 ................................ GCGACGAGAGGGAGTTGCAAGTGATCCGACAGCTACG 404295 32 100.0 35 ................................ AGACCTGGTGCCGAAGGCTTCCAGGATGCCGGCCA 404362 32 100.0 35 ................................ CTTATCCGCCGACTGCCATTCGTGGGCTGACGCGA 404429 32 100.0 36 ................................ ACCCATTGAACTGGCGCCCTGGGCGCTGTGAGGAGG 404497 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 100.0 35 GTCGCGCCCAATACGGGCGCGTGGATTGAAAC # Left flank : GCCCTGTCTGTGGAGGTGAATCCACCATGATGGTGTTGGTCAGCTACGACGTCAGTACACGTGAACCGGAAGGGCCGAAGCGGCTGCGGCAGGTGGCCAAGGCATGCCTCGATTATGGGCAGCGTGTTCAGTTCTCGGTCTTCGAGATCGAGGTCGAGCCGGGGCAGTGGGCCCTGCTCAAACAACGGCTGCTGGATCTGATCGACCCACAGCAGGACAGCCTGCGTTTCTACTACCTCGGCAAGCACTGGCAACGCCGTGTCGAACACATCGGTGCAAAGGAGACGCTCGACCTTCATGGCCCCTTGATCCTCTAGCGGGAAAAACGCGAACTACAAGTGACCGGAAAATCCCCGGGAGGTTCGCAAGTTTTTATCTTTTTGATTTTTTTAGCCTTTTTGTCTTTGCTCGATCTCCGAACTTGGCTAATCGAAGATTTTTCGCCGGTTCGCGAAATTGGCTGAAGTGTCTTTTGCATTTCAGCGGGTTACGATAATGGA # Right flank : CTGGCTGCGCCACCTGATCGGTGCGCCGACGGGCGCGTGGATTGAAGCCGGGCGGTCAGTGTGGTTGATGTGTTGAGTGCGTGGGGCGCCTTAAACGGACGGCGCGAAACATGCCTATATGCCGAAAATCAGTAGGCGCTGCTGTTGGTTCGCAGTGCTCGCGGTGTTCGCGATGGACTGTGTGTTCCGCACCGCACAGCTAGTTGGTTTGGCGATCTGTCTCGTGCTCGTCTGCGACATACCGTCTGGATCCCTGCGGTGTCGGCGGAGTACCATCGGTCGCGCCCTTGCCGGAGCGGCGCGCGCGAGCGTGTCGGGACTGGGACTGCTCCGGGGTCTCTCCGTCGCGGCTGCGGCGGTCGCGCGTGACTCGCGGGGACCGGCTGCGGCTGGCGGGAGTGCCGCGATCTATCCTGAAGCCACCACCCCGACAAGCAGAGACCACATGCCTACGATCGGAACCCCTTTCTCCCCCAACGCGACCAAGGTCCTGCTTTGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCAATACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 2 489656-491808 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000002.1 Marichromatium gracile strain DSM 203 Ga0244650_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 489656 37 100.0 35 ..................................... CGCTGGGCGGCGACACGGCGGCGCTGGCTCGCGCG 489728 37 100.0 35 ..................................... TAGCCGCGCGCGAATGCCGTCCAGTCGCGCCGGCG 489800 37 100.0 36 ..................................... CGCAGCGGGGTAATCAGCATCGTGCCATCGGGGAAA 489873 37 100.0 36 ..................................... ACCAAGCGCGCGGTGTCCGGGTGCCCGATCGCCGAT 489946 37 100.0 38 ..................................... ATCGCCTCAACCTCGACATCCGGCCGCGCCATGCCGCG 490020 37 100.0 37 ..................................... ATCGAGGCGGTCGCCTCGTGGCCGTCGGCTACGGGCG 490093 37 100.0 36 ..................................... ACTTTCGAGACTCAAGCCCGGACGATTGTCCGAGCG 490165 37 100.0 37 ..................................... TCGAGGATTTCGGCGCGGCCGTGTTGATCGAGAACAT 490239 37 100.0 36 ..................................... AAGGATTGGCCGAGAGCTTGGGTCGGTTCAGTCAGA 490312 37 100.0 35 ..................................... ACCAGGCCGGGATAGCGCGCGGCCAGCGCGGCGCG 490385 37 100.0 37 ..................................... CAGGCTCACGTCGCCGCCGCGGACATCGCCATTGGCG 490458 37 100.0 36 ..................................... CTCGGTGATAGCCATATCAATACCCCCCCACCAGCA 490532 37 100.0 36 ..................................... GCGGCGAGGCCGCGGCGAAGCTGGATGCGTTGGGCG 490604 37 100.0 36 ..................................... CGCGACGCTCGCGAAATAGACGACGCTGCTCGGGAT 490677 37 100.0 35 ..................................... CCCAAGTGACCGCGCCGAACTCGATGCCAACCTGG 490749 37 100.0 36 ..................................... ACACCCTGGGTCGACGCGCCGGCGACCTTGGAAGAG 490823 37 100.0 34 ..................................... AAATGCTGGCCACCGACTGCACGGGTCAGCGGCT 490895 37 100.0 36 ..................................... ATTAGTAGTTGCATATCAGACCGCGAGCCTGAAAAA 490968 37 100.0 35 ..................................... CTGAATTGGGCTGCTGTCATTGATGACGGTGTTGT 491040 37 100.0 37 ..................................... ACCAGGATGCGGCGCAGATGGTGGCCGAGGCGGAAAG 491114 37 100.0 35 ..................................... CAGGATGAGCCGCACGGCCCACACTGGGCCAAAAA 491186 37 100.0 36 ..................................... ATCCTCCCTCGCCTTCCAGGCAGCGGTGAAACTGCC 491259 37 100.0 36 ..................................... CGCAACACTCGCGAAATAGACGACGCTGCTCGGGAT 491332 37 100.0 38 ..................................... CTCTTTCACAATGCGGCCCAGACCGAGAGAGAAAACAC 491407 37 100.0 36 ..................................... GAAACTCGAGGTGTGTGGCGCGCCGCCCGTGAAGCG 491479 37 100.0 36 ..................................... GCACACATGCTGCTCACGCGCCCGCTCACCGTGGCG 491554 37 100.0 35 ..................................... ATGAGGTACCAGCAGACATAGGCGGCTTTCGCCTG 491626 37 97.3 35 ........T............................ GCGACGATGAACTGTCGATGGAGATCGTGCTGATC 491698 37 94.6 37 ...T....T............................ ATGACCGAGAGGCTATGGATGGTCGGGGTCGAGACGA 491772 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 30 37 99.6 36 GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Left flank : GCTGTGGCTTGCCGACGGCACCATGGCGCCACTGGACTACAAATACACCCCGCGCCGCGAGCAGGTGTTCAAGACCCATGAAACACAGATCCTGCTGTATGCGATGCTGATCACCGAGACGTATGGGTTGCCGGTCGAGCGTGGGTTCGTCGCCTATATTCGCGACGGCAGCCATCTGATCGAAGTGCCCGTGAGCACGGTGAGGATCACGCAGACCCGGCATCTGATTGACGAGATCTTTGATATCATCGAGACAGGCAGACTACCGGCGCGCACCCGCTCGCCCCTGCGTTGTGAAGACTGCTGTTACAAAAATATCTGCGCTTGATCGCCCGTGTATTGCAAGTCTTTGAATGTTTTGATTTTTTGTGAGTTTTTTCGATGCGGGGAGCGCTTTTTTCAGGTGTTTTTCAGCCGATTCCCACTCTGAAACGCACTTTTAGAGCACTTGTTTTTCAGGGTTATGTAACTGAATTTTATGATTTTTTAGAGAATTTGCG # Right flank : TCGGGTGGCATGGTTCCGGACCGGGCGGGCGCTCAACCGCTCGTCTCCCAGATCGGTCGTGATCAACTCGGCGGCGGCCCAAATCATCTCACGCGTTCTGCTCTGCTGATGACTACAAGGCGATCAGGATAGCTGGTGGCGGTAGATAAGTATGTGTAACGAGATGAGTTCAAGAACTAGGCAGTCAAGCGGGTGAAATCGGCTCTCAGCTATTGATCCCCCGTCGAGTTCATGCAACATTGGCAGGCGAGTCAGAGTCGCGACCAGACGGGCGCATGAGACCAACACCTTGAGGGACGAAAAAAGGGAACCTCAGGAGGAAATAGGCATGTTCGGGGCAATGCGGGAACTGGCGTTATTGGAACTGAACCGTCGCTGCGGAGAAACCGCGCTTGGCTTGTCTGAGATCCGTGCGCGACATGGCGAGCAACTTGCTCCACTTCTCGTCGAGGCCGCTGAAAAGGTCGCGCGCGTTTATCTGCTACAAGCAGTTCCGGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 69981-68266 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDC01000008.1 Marichromatium gracile strain DSM 203 Ga0244650_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 69980 37 100.0 36 ..................................... TAATAACTGGTGGTTTGGATGGTGGAGTATCCTGGT 69907 37 100.0 36 ..................................... TCTCAGGGGGATGGAGATGCGGCGATCACCCTGCAT 69834 37 100.0 35 ..................................... AGGTTCCCGAGTCGCTGCTGGGGGCGACCGAGCGG 69762 37 100.0 36 ..................................... ACAGGATCCCGCAATCCTGTAAAATACAAACCATCG 69689 37 100.0 36 ..................................... TGGAGCGGCGACTTGCGCTGGATCATGTGGTGTACC 69616 37 100.0 35 ..................................... AGAGCACCGGCTATGTCGTAGGCCCTGGATCTCTG 69544 37 100.0 35 ..................................... GAGGGCGTGATTGGGGCGGTCTTGTCGGCATACTC 69472 37 100.0 36 ..................................... ATTAGCGCCTGGGCGTTTGCGTGCATCGCGTGGTGT 69399 37 100.0 36 ..................................... CCATTGCTGGTGCTGGGGGGAACTCAGTGCTCCAAG 69326 37 100.0 36 ..................................... CCTCGGTAGAACCATGTCTCGGTGGTTCCTTGGCAC 69253 37 100.0 35 ..................................... CGGATCACGTAGGTCTTGTCGACTTTGCTGCGGAC 69181 37 100.0 36 ..................................... ATGATGTGGAGCACTTCCGTTTCGGATGAGTCGCGC 69108 37 100.0 36 ..................................... CGTCTGGCGCTTGTGCGTATCCGGTAAACCAGCCGC 69035 37 100.0 37 ..................................... CGCGCCAGGGTAAGCGCGGCCTCTTCGCGGCCCGCGG 68961 37 100.0 35 ..................................... CCGATGTCGGTGACCTTCAGCCCGGCGTCGCGGAG 68889 37 100.0 38 ..................................... ATGTGGACATGCTGCGCCTGCTGCGGGCGACCATGCGC 68814 37 100.0 36 ..................................... TCGGGTACATGCGGCTGGAGGTGTACACCACCGGGG 68741 37 100.0 37 ..................................... CGCCTCCGGGTATGTGACGAGCAGCAGCCAATCGGCT 68667 37 100.0 37 ..................................... CCGACCGCCTCCATCTTGGGATCGTCGATCCCGGCGC 68593 37 100.0 35 ..................................... TTGTCCGCGTAGGCGACCTCTACCGCGTAGACAGC 68521 37 100.0 35 ..................................... AGGCGGAACGGCGTGCTGCCGTCAGTCGCCGCGTG 68449 37 97.3 38 ....................................T GCGCGGATCGCCACCGAGGCGCGCTCGCGAATCCGGCG 68374 37 100.0 36 ..................................... GCAGGGATCGCTGCCGGGTAGAGATGGGCGAGCACG 68301 36 94.6 0 ..............C....-................. | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.7 36 GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Left flank : CCGCCAGGGTGCCCCAGGGGAAGTCACGCCCCAGCACCCGGTAGACGCCGGTCGAGATCCAGAAGCGCGACAACGCCCCGAGCGCGCCGCCCCCGGCGATCGCCACAAGTTGCAACACGGTATCTTCCCGCCAAAAGGGATAAGTCTACTATGGACGTCCGGGCCTTTGCCCGGGCGAACGCCCCGCCCACCCTGGCCACTGCCGCACATCCGAAGCGCACACACAGAGGACACCGATCGCACCGACTTGATATTATCGGGCCACGGCAATACCACTGCCCGCAGCGACCTCGACTCAGACTGCTGAGCAAAAAATATCACCGACCCTCAACGCCGCTGACGCAACCTTCTGATAAAAAAGACATAAAATCAAAAGCGTCAATGTCAGCCAGCGAGAAAACAGGGCATACATCGGTGCAAAACATCTATTTTTCGCCACCCAAGAGCCTCGGCAGAAAAGACCAAGTGCTTGTTTCAAAATGCTTTTTAGGGAATTTGCG # Right flank : CTTGGATGCGCCAAACGCTGTTTTGTTGCGATGAGAGGGTGAGTAACGGGCAACTCAACCTGCGAGATGACATAGCGATGTAGGTTGGGTTGCTGTTTTTCAGCAACCCAACATCGGTCGATGGCGCCAGCACCAGCCAGATCGATCTCAATACATCGAGTCAGCAGTGTTCGAGCAATACGCTGAAATCCCCCGCCAGATAACCCTCACGCACCGTCATGGTCGCATTCAAGGTATCAGCGAGCTGTTGGATCTCGGCGGGCCGGCGACAGTTGTAGATCAGCGAGGTGTCGCGTCCCTTGAGCAGGTTGAATACGAAACCGCGACGGCTGGCGGCGAGACAGTTGCGGATGAAGCTCTGGGTCTCATCCCAGGTGAGGATGTTCATGGCGCCGCTGCAGACGTAGTAATCGGCCTCGGGCAGCGGATCCTGGAGCACGTCGCACTGGCGGATCTCGCAGCCGGTGCGCGCGCGCGCCGTCTCGATCATCGGCGCCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGCTCAATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //