Array 1 108432-106768 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDK01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN005844 NODE_2_length_285381_cov_3.56454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108431 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 108370 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 108309 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 108248 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 108181 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 108120 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 108059 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107998 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107937 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107876 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107815 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107754 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107693 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107632 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107571 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107510 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107449 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107388 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107327 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107224 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107163 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107102 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107041 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106980 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106919 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106858 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106797 29 96.6 0 A............................ | A [106770] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125816-124690 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDK01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN005844 NODE_2_length_285381_cov_3.56454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125815 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125754 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125693 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125632 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125571 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125510 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125449 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125388 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125327 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125266 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125205 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125144 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125083 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125022 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124961 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124900 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124839 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124778 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124717 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //