Array 1 3211662-3213459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024243.1 Escherichia coli O128:H27 strain 90-9281 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3211662 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 3211723 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 3211784 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3211845 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 3211906 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 3211967 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 3212028 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 3212089 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 3212150 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 3212211 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 3212272 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3212333 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3212394 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 3212455 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 3212516 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3212577 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3212638 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 3212699 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 3212760 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3212821 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3212882 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3212943 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3213004 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3213065 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3213126 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3213187 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3213248 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3213309 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3213370 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 3213431 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3228961-3229722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024243.1 Escherichia coli O128:H27 strain 90-9281 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3228961 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 3229022 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 3229083 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 3229144 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 3229205 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 3229266 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 3229327 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 3229388 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 3229449 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 3229511 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3229572 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3229633 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 3229694 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCATTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //