Array 1 19392-18960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQE010000007.1 Listeria fleischmannii strain FSL L7-1629 NODE_7_length_141162_cov_34.353652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19391 36 100.0 30 .................................... AAGCGTTCTTGGAACTCGTTCCCATCCGTT 19325 36 100.0 30 .................................... ACCAAACACTTTACAACTCAAAAAGTACGT 19259 36 100.0 30 .................................... TTGTTCGACTAAGATAAATCATGGTAGATA 19193 36 100.0 30 .................................... TTTTCTTTATATTTTTTAGCAGCCAAATCA 19127 36 100.0 30 .................................... TTTTTTATACTTATTTTCTTTCCTCACCTT 19061 36 100.0 30 .................................... ACGAAGACTTGGTTCCAGAGTTGTGACAGA 18995 36 88.9 0 .............................AC...TT | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TTAAAAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGTCAAATCGGATATGTTTATATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCGCATTCGCTCGCGGATGGTCGTAATTTATATACACGTGTTTGCGCCTATTACCCAGATCAAACTATTCCTAGCTACAACGAATTTTTGGGGAGACTAAAAATGATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATCCAAATGAATGTAAAAGAACTGGTTTTAATTAAAATCATTAATGAGCTATTCCAGTACTTTGACCTTATTCCAGTAGCAGTATTACAACACAGTCAACTAGAGTATGATTTTTTATATGAAAGCTGATAAATTTTATGATAAACTAAAATAACAGTAGTTTTAAAAATCTAAAACCAATTTGAG # Right flank : ATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTGTTCTCAGATATTCTTATGATTTCATGTAAATAAAAAATGCTAGAGGCAGACTATTCGCTGCTTCTTTATTGTATCCAAATAACTATGTCTAAATAGAACTAAAGTCTATCTGCTGTGTTCAAAAGCCTGATTTTATACAACTTTTTATCTAATTGACTCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTATTCATCAAGAGTTTCTCTAATTAAAATAAGGGGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTGCCAAAGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAGCAAATCGCAAAGGCAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAAGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGAA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 87719-86907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQE010000007.1 Listeria fleischmannii strain FSL L7-1629 NODE_7_length_141162_cov_34.353652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 87718 30 100.0 37 .............................. CTAAGTGCGGACGGTTACGAAACGAAATACTATAAAA 87651 30 100.0 36 .............................. TTCGATAACGTCACACTAGGTTCGTTTATTTGTCTC 87585 30 100.0 35 .............................. TTAATAAATTTTTCAACCTCAGTCAAATGGTTGTT 87520 30 100.0 35 .............................. GTATATAACGCAAATCACAACCATTCTCAAGCATG 87455 30 100.0 34 .............................. CTTCTTGAAATGAACGGGTTTGAATCCCGTTGAC 87391 30 100.0 35 .............................. GACAACGGCTATGCGTTTGTAAATATACGGATGGA 87326 30 100.0 35 .............................. ATCGTTTCCGCATACGACTGGGTTGTGTTGAAGCT 87261 30 100.0 35 .............................. TGATGACAATAAATTCATCACAATATTTTTCGTAA 87196 30 100.0 34 .............................. CCATTTGTGATAGTTAAAAATATAAATGTGATTT 87132 30 100.0 35 .............................. CTTTTTAATGAATTTCATGCTGTTCTAGTAACAAA 87067 30 100.0 38 .............................. TAAGTTAATTTTGCTTTATCCATGGGGTTTTCTTTATT 86999 30 100.0 35 .............................. GTTTGTGCTTCAAACGTTGCTTTAACACCTGTAAC 86934 28 90.0 0 .............-.....C..-....... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 35 GTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : CTTATCAAGGTTTTAAAATGTGGTGGTGAATGATGTATATTATCTTAATTTACGATATTCCAAATGACGAAGGAAGTGCTAAAGTTTCACGCAGGATTTTTAAAACATGTAAAAAATATCTAACGCATATTCAAAAGTCTGTTTTTGAAGGTGAAGTTACACCAGCACTTTTAATGCAATTAAAACTAGAGCTAAATCAACATATTCGTAAAGATACAGACTCTGTTATCATTTTTAACGGTCGTAGCCAAAAATGGTTAGAAAAAGAGTTTTTAGGTGTTGAAGATGACAAGACATCCAATTTCTTCTAATCTGTCGATATGAGATAGCGTAAAATTCCGAGGGGGTCGACAGAAACGCGAAATTCATTCAAGGAGAATGAGTTTCGCGTTTTTTAAAATTTCTAATACATATAAATTCATGAATTTTGATAAAAAATTTAGTGGTCGACAGAAATACCCTTTTGAGGTAAGATGGGAGTAAGGTTCATAAGAGCACCT # Right flank : TCTGATATGCGGATTAATCAAAAATCTACCCCTTTTGTTTTATTCTAAAATATTCATCAAAAACAAAACCTATTCCAGAGGCTTACGAACGGATTCCTCTACGAACAGGTTTTGTTTTTGAGTATATAAGATGTAATTTCACTGCGTTTTAAAATGAACAAGAATGTAGGTTAACAAATTGCGCGTTTGCGTTTTTTTCCGACACGGTCCATTTGAACAGCTTTTTCAATGTAGCTGGATGCAACAGGGACTTTACACGCCGTGTCACCCATGTCGACGTAGACAGTGCCTATTTTTTTAGCAACGGCTTCTGCTTTTTGAAGTAGTGGGGGATAGTAGGTTCCGGTGGCGATGACGAAATTGTTCATGGTGTATCTGACGCCGTTTTTGGCGTTGTGGATGGTTTGTTCGACTTTTTCTAACAAAAGAAGTACTTCGTCTTGATTAATTTCTTCGTTTGGTGCAATGGAAAGATAATTTGCGTAGCAGCTCCAGCCAGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //