Array 1 77169-77018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027023.1 Streptomyces sp. WAC00288 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77168 29 100.0 32 ............................. CGGGTCCGGGCCCTGATGCTCCAGTGCGCCAT 77107 29 100.0 32 ............................. CGGACCTGGTACCTCTTGCTCGGTACCAGCCG 77046 29 89.7 0 .............T......A.......G | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : TCACGTTCACATGGACCGAGTGCACCGCGGCGGGCGCGGCCCGGAACTCCCGGGGCTCCGGCGACTCGATGAGCTCCTGGTAGTAGACGGGATCGAGGTCACCCTCGTCCTCCCAGACCGTTGACAGAGCCAGCAGCGCCCGCGTCGGCGACTGCATCGTGTGACGGTCGGCGAGGAAGACGACACTCAGGTATTCGTCTTCGTCCACCGCGGCAAGAACCTCATCAGCTGTTGTTCCCGACCAAGCGGGCGCGTCGACCACCTGCACCCTTGCGGGAAACTCGCCGTCCGGCCCCCACGGCCGGCGAAGCTCCCCGACCACCGCATTCCACGACCCGTCGTCGCTGAAGTCGGTCCTGATGACGAGAGCGTCGAACATGTCGCGTCCGACGATCTCAGGCAGCACTCGCTCAACGCCCTCCGGCATCGTCATGCCCAGGACTCTCCCACGCCGCACCGACAACCAGTTCCCTCGGGAGTGATCCAGAGGAAACGGCCTA # Right flank : GACGTGCAGGCCGTCGGCCAAGCCGCTGGCATGGGCGGTCTCCAGCGGGTCGTATCTGGTGGCGCGGGCGGCGGTGGCGAAACCGCGGGGCGGGCAGTGGCTGGACCAGCCGCCGGACAGGCCAGCGACGTTGGCCAGGCGCTCGACCGAGGCCCGTCAGTTCTTCCAGCGACTTCTCGACGACGTCGGATCGACCTACCGGGTCAATGAGGATGAGGGCGGACTGGAGAAGCGAGTCGCCTCGGCCGTACGCGATGCGGTTCGGCAGACCACCGCAGAGGCGGCGGCTCAGCAGAGCGCCGGCTCCGCAGCCGACTACCCAATGATCACGTGGCAGGCCGTGTACGGGCGGAACCCGGATCCGGTGTGTGCCTACAGCGAGGCGATCGAGTCAACGGCCCGTGCCACGCACCCGCAGCTCGTACCGCTCGCCTCGACAACGGCGCCCAGGGCCGGCAGTAGCGGCGCCCTGACCGGCGGCGGACTGCTCTTTGTCACGC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79494-79343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027023.1 Streptomyces sp. WAC00288 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79493 29 100.0 32 ............................. GTGCACCGGGCGCTCCGCGAGGAGGGCCTGAT 79432 29 100.0 32 ............................. TCGGAGGCGGAGCGGCTCGCCGAGCAGCTCGC 79371 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Left flank : CTGGGACGACGGCAACACCGTCGTCAGCAGCGGCCGCAACTGGAGTGGCACGGACCACCTTGACATCATCCCGGAGACCCCCAAGCCCTCGAAGCGGCCCGACCCGGACGACACCACCCCAGGGGAGTCAACCCCATGAGCCCCGGCACCACCGTGATCGTCCTCATCGCAGCCCCGCCCTGGCTCCGCGGCCACCTCACCCGGTGGTTCGTCGAAGTCGCCGCCGGCATCTTCGTCGGCAACCCCAACCCGCGCATCCGTGACCGCCTCTGGGCCACCCTTACCGACCGCATCCACGACGGCCAAGCCGTCATGGTCGAACCCGCGACAACCGAACAGGGCTGGACCACCCGCACCGCTGGCCGCGACCGCTGGACCCCCGTTGACTTCGACGGCCTCACCCTTATCGCCCGCCCGCGCCAAGACGGACAGGTGTGGCGTCCCCAAACTACGTGAAACAGAACAGCATGATCGCGTAACAACACCACAGGTCACCAAGT # Right flank : CCGTCGATCCTCCACGACGGCAGCACCGCCTAGGGCGTTTCCTTCGGATCATCCGGTCGGATCGCTCTGAGTGGAGCCGCATGGGCGATCATTGAGGCGTGAGCACGGATTATTGGGTGGTCCTCGGGGACTCCGAGCGGCAGCAGTGGCGGTACGCCCCTTTCCGGACTATTGGGCCACTGGATTTTGGAATGAGTCGGGAGGACGTCGTCGCCGCCATGGCGAAGCAGGGCTTCACTGCGGAGCAGCACAATATGGGTGGTTGGCACTCGACGGGCCGCACACAGTGGCGAGCCGAGTTCTCGAAGCCACAGCCGCAGCCTTGGAGAAGTCGGCCAGCGGTGAAGTGTTACTTCGTCGAAGGGGCGGGGTTGACGTGCGTGCTGGTGGATGGACGGCTGGGCCCGCAGGTCACCCACGAGGGAATTCGCCTGATCGGCCGGATTCCTTCGGAGCTCTTGGAGGAGATGGAGTCCTACGCCGACCGGCACGAGGTGGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 90082-90413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027023.1 Streptomyces sp. WAC00288 plasmid p1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90082 29 100.0 32 ............................. CCCCAGGTCACGGGCGGTTTCACCCTGCAACT 90143 29 86.2 32 ......C..............A.G.A... ATCGGCGAGTCCCTCGGCTACGAGCTCATCAA 90204 29 82.8 32 C.GC..C.....................G AGGATCTTGTCCTCGGGGGTCACGCGAGTCGC 90265 29 75.9 30 ......C...............GCTC.TT ATGCACGGTCTGATCAATGAACGGCGAGTC 90324 29 82.8 32 ......C.......T..........CT.G GAGCGCCGCATCGACACGGTGTGGCGTAACCC 90385 29 79.3 0 C.....C.T................CT.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 84.5 32 GTCGTCTCCGCGCCCGCGGGGGTTGTCCC # Left flank : CCGGTTCGTCGGCAGCCGCCCCCATTTCAGACCTGCCGCTAATACCGGCGCGGCCTCCGCCGTGTCCATCGCCTGAAACGCCGGACAAGCCTTCCCGCAGTCATGAATCCCGCATACCCACATAAACCACATTCGGCCCCGGCCACCACTGACCTCGTCCAGTCGCCGCCGAAACGCCGCCGACAAGTACCGGTCCCACACCACTCCGGCCACGGCCGCTGTATCCAGCAGATGCCCCAGCAGCAGATGTGTCCGACCACCATTCCTCGCCGCCGACTTGCCCCACAACCGCGATACCCGCTCCACGGCCTCCGGCGACAGCCCCATCGCCTTCATCAACGCGACGACTGAACTCCCATGGTCTGCCATTGCTACCCCCAGCGCCAAAGTCCTGACACCCTAGGCCCTGGCACTGACAACGCCTCCAAGCCGGCCGCCGGAGCGAAATGCATGTAAAGGAAAACCGTAGCCGCTGCTAGCATCACCGCAGCTCAAGAAGT # Right flank : AGCAGGCCTCCTGCTCGCGTTCGTCGGTGCCATGTCGTCCCCACGCCCGCCGTCCGGCTCGGCGCCGCAGCGCCCGCTACCCCGCAGTCCAGCGTACCCGCCACCACCCCTCAGGGAGCCCCCTTGACCACCAGCCCCGCTTCCGGCGAGCAGCCCTCGCAGGAAGAGACCGGCCGGGCCCAGGCCCTCAAGCAGGCCGTCGAGGCCCCATACCTGGGCGCCCCGGCAGACCAGCCTTCCCCCACCGCATAGGCCCCGGGCCGGCAAGCCGCAGGACCCGGAGGTCGAGCACGGAGTGCTGCTGCGGGCCGCCGGCGTGGCCTCCGCCGAGGTCGTCGCCCACCGTCACACCTGGGAATGGCTCGCCGCCCGCGCTGCCGACCACGACCACTTCCGCACCCCTTCGGCCGTTGACGACCTGCCCGACGGCCGCATCAGGACTACCGTCTCCGGCCGCTCCCTGATCGCCCTGCTCATCGTGTTGTGGGAGACCCGGGAGA # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.23, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCTCCGCGCCCGCGGGGGTTGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9497-8856 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027025.1 Streptomyces sp. WAC00288 plasmid p3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 9496 30 100.0 31 .............................. GGACTCCGGCGCTGTAGGCGACGAGCTGGGG 9435 30 100.0 31 .............................. CGATCGAGGCCGTCCGCGGCGCGGTGGCGCT 9374 30 90.0 31 ...........ACC................ GCTCGTCGAACACGGCCTCACGGACGGCACG 9313 30 90.0 31 ........T...CC................ CGAAGTCGACCACGTCAGGCGCTCGTGCCGA 9252 30 83.3 32 ............CC...A.....C.....T GGGAGGTGTTCGAGGACGACCCGAAGACGGAC 9190 30 90.0 31 ............CC...............T CGCCACGACCCTGCTGTCCTTCGAGGACTAC 9129 30 86.7 31 ........T...CT...............G CCATCACGACGCGCCTCTCGCTTGGCGACAC 9068 30 93.3 31 ............CT................ ACAAGTACGCGCAGATCGGCCTCGACACGTT 9007 30 90.0 31 ......T......T...............T TCGCCTCCCACTCGGTGGACCGCTCCTCGAC 8946 30 80.0 31 ........T...CTT.........A....T CCTGGTTCGTCCAGGGCCCGGACCTGGGCTT 8885 30 66.7 0 ........T...CTT.........TGTGAG | ========== ====== ====== ====== ============================== ================================ ================== 11 30 88.2 31 CTGCTCCCCGCGTGCGCGGGGATGGACCCA # Left flank : GTCTGCCAGCCGCCCGGTCGTGGCTGACACTCGTGCACGTCGTCCCTCAGCTCTGGACCGGTGCTGTTGAACATGGGTGCTTCCAGCAGTGGGCGCTTGCTGCACGCAAAGACCAGATGACCGGAAAAGCCCATCGAACCTCCTCGTCGAATCCCAGCGCACCCTACGAGCTGCCACTGACATCACCGGTGCCGGCCGACTGCTGCCACCGGCCGACTCACCGGATCAACCGGCGGTAGCCGATGAGGACTGCGGCTATGCCGACGAACGCGAGGAAGTGTTCAGCTTTGCGTTCATAGCGTCGGTGGAGCCTTCGGCAGCCGGCCAGCCAGGACACGGTTCTCTCGACCATCCACCGATGCCGGCTCAGCCGCTGCGAGGACTCGACACCCCTGCGAGCGATGCGGTGGCGGATACCGCGCGGTTTGGGTGGTTTATCCGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGATGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : GTTCGGTGAACCTGGCACGGGGATGTTCGGATTCTGGTGTCACTGACGTGTGAGTGTATCGGTGCTGTTCAGGGCTGGTTGGTCAGGTCGATCGTGGTGACATCTCTCGGGATGTCGCGGTGACATGAAGTCGTATCGGCCGGTGTCGTGTTCGCCGTGTCTCCTTCGTTTTGTGATCTTGATGCTTGGGGCCTCGGAGTTGTCCGGGGGCGTGCGGGGCGTTTCGGCTTGGCGGCGCTGGTCACGTTGACCGTCAACGCTCCTAGAACACAGGCAAGTTGCTTGTGTCAAGCGCTCGGATTCGGGTTGGCGCTCGTACACGTGTGTCTGCTATCTGTTGATGCGGAGCGCGCCCGTACCGCGTCGCATCCTCGTGCACCTCGTGCCGGAGCCCTTCCGGAGAGCCCAGACCACGACCCCACCCCGCAGCCCGCTTCCCCGCGGGCCCGGGCAGGGGCCGTTGCTGCACGCAAAGATGCTGCGGAGGGCGGTCCTGCCCG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19951-18015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027025.1 Streptomyces sp. WAC00288 plasmid p3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 19950 28 72.4 32 T.A..T......T.T.....-.C..T... GGTCTCCCGGAGGCAGACGACGGCATCTCCCT 19890 29 100.0 32 ............................. CCCTTCACAAAGAAGCCCCGTCGGGTAATCCG 19829 29 100.0 32 ............................. AGCCTCCGCCGCCTGCGGATCGCCGAGCACTT 19768 29 100.0 32 ............................. TTCACGACGAGTCTGCCCTCCGGCTGGGAGGC 19707 29 96.6 33 ............................T CGGACCGTTACGGCTACGAACGGGAACAGTTAA 19645 29 100.0 32 ............................. AAGGAAGACAACCTGGAGATCCTCTCCGAGTC 19584 29 100.0 32 ............................. ACCACCGGCATCGAACGCCTCGACATCCCGCC 19523 29 100.0 32 ............................. GCCGCGTCCGGCGCTCCTCGGAACCGGGCGTG 19462 29 100.0 32 ............................. CACGTCGTGTTCCCCAGACTGTCGAAGACCGG 19401 29 100.0 32 ............................. TTTCCGCTCTGTGCACACTGCACGCACGCCGT 19340 29 100.0 32 ............................. CACCGTGTCCACGCTCGCCCTGCTCGTCGTCC 19279 29 100.0 32 ............................. CCCAAGCGCGGCCCGGCGCCGGCCGCCGCAGA 19218 29 100.0 32 ............................. GGCACCCCCTTCGAGGAGAGCTACACGCCCTC 19157 29 100.0 20 ............................. AGCGCGGCCGCCCTCGTCGC Deletion [19109] 19108 29 93.1 32 ..............TA............. CGGATGAATCGGGGCTGCAAGGGGCAAACGCG 19047 29 93.1 32 ..........T...T.............. GACGCGTTGCGCGCCTCCAGCCTCCTGAAAAG 18986 29 82.8 32 .....T.......T...A......A...T TCTCCGTGGCCTGCCGCGCGGGCGGCTGCGGC 18925 29 86.2 32 ........T..A.T...A........... GTGTCGGCCGCGAAGTTGTCGGTGGACCTGAG 18864 29 93.1 32 .............T............T.. TCGCCACGACCTTGCTGTCCTTCGAGGACTAT 18803 29 86.2 32 ........T....TT..........G... CCGGCTGGCGGTGGCGCGACGCTGACGTATGG 18742 29 82.8 61 ...T..T...T..T.........A..... GGCGGGATCGTGGGCCGGCCCGTGGTGGGCCTGGTGGGCGAGGCTGGCAAAGAGGTCATCC 18652 29 82.8 32 ........T..A.T..T........G... CGTTGGGAGTCCGCCAGTGACCCCGCCCGACG 18591 29 93.1 153 .............T..............T GCGACTTCCCCGGCGACCAGGCGGCGGTGTGGCTCCACGTGTTTGCGGAGTCGTCGCGTCTTTGGGGGAGTCGTACGGTTTGAGTAGTTTGTCTGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGGTGGGGTAGAACTGCAGGCCAGAAAG 18409 29 93.1 32 ............TG............... ATGCAGGTCGCCGCGTCCGGGGCGCTGGTACT 18348 29 93.1 32 ............TG............... TGGATCGGACCGGCCTCCAGCGCCGTCCGGTA 18287 29 93.1 32 ............TG............... AAGCCGCCCACCCGCATGTGACGGCGCGATCC 18226 29 96.6 32 ..............T.............. GAGACCCTGCTCGTCGTCGTACTCAACCAGAG 18165 29 93.1 32 ............TG............... AGGCCGTCAGGCCCGGCCTGGAGGAGCTGCGT 18104 29 93.1 32 ............TG............... ACCGCCCAGGAGCACCGCCCGTGACCGTCACC 18043 29 93.1 0 ............TG............... | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 30 29 93.9 37 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : TCAGACCGACGGGACCCTCACCTACGACCAGGAAGGCACTCTCCGAGCCGACCTCGCACGCCACACCTCTGACAGCCCCGTCCACAGACAGCAGCAGAAAGACCTGCTTCTCAATACCCTAGCCATCCCAGCCCACTGGTTCACCCGGCAGAAAACACCCCTGCCTACTCCCGAGACATGGCCGGCACACCCTGCGCCCGCCCTCAAATACATGAACGTCGCCCTGTTCGACCCAGCCAATGGCTCCTGCATCAGCGGTCCCCTCGGCCTCACTCTCCACCCGTCCACTGGACTATCCAGATGAGCCCCCACAAGGGGCAGCCGCGAGCGAACGTTCCTGCCGCTATTGTTTCTCACCTCCGGTCCAGCCGGAGATAGGCCAAGAGTTCATAGATTCTGGCCTTCCGCCTCACCACCGTGGGGATCACGTGCCGCCCAATCGGGCGGCACGTACCCACACCTGGACCGTCGGTTTGAGTGCCGTCCATCTTGCCGCACGC # Right flank : GACAGCGCGGGCGCCCTGCGGTGGCGCCTGCCTTTGGGAGGAAGTTCGCCCAGGAGGCGGAGCAGAAGCGGGCGCAGGCCGAGTCCGAGCGGCGGTGCGTGGCCGAGTTGGAGGCCGAGATGGAGCGGGAGCGTCAGGAGCGGGCGGCGGCCGAGGTTGCTGAAGAAGTGGACCGTCTGGCCACCGAGCAGGCCCGCGCGGCGGAGGTTGACGAGGAGACCGTCCGGCTCCGCGCGCAGATGCTTGCGGAGCATCCGTGGATGGCCGAGTACGCCGTGAAGTCTCAGCAAGAGGCCGCAGCGCTGTTCTGAGCGCCGCTCTGCCCCGCCTGGGTCTCTTCCCGGGCGGGAAGGCGTATTCGTTCGGCAGGGCGGCGGGACCTGATCGCGGTCGGCCCCTTCGCCGGGGTGAGCCGATCCCCGCGCAGCAGACCGGCACCTATGGCCCGGCCCGCCGCGAGACCGCACACCAGGACGACGTGCCCATGCCGGCCTCGGCCG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29579-28300 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027025.1 Streptomyces sp. WAC00288 plasmid p3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 29578 29 96.6 33 ....................A........ CACAACGCCAACGTGTTCACCAAGTCGGCCGAG 29516 29 93.1 32 ..............C.........T.... ACGCGGTGGTGGGCCAGGTGGACACGGGGCGG 29455 29 89.7 32 .............TC.............T CCTCCGTGGCCTGCCGCGCGGGCGGCTGCGGC 29394 29 82.8 32 ........T....TCA........A.... ATCGAGAACCATTTCGTCGTCGATCCCGCGAA 29333 29 86.2 32 .............TC.A..C......... TCGCCACGACCCTGCTGTCATTCGAGGACTAC 29272 29 86.2 61 ........T....T...A.....A..... GGCGGGATCGTGGACCGGCCCGTGGTGGGCCTGGTGGGCGAGGCCGGCAAAGAGGTTATCC 29182 29 89.7 32 ......T......TC.............. TGCACGTTCGCGATGAAGGTGGTGACGGTGTC 29121 29 89.7 32 .C...........TC.............. ATCGAGGGGAAGTCCATCTTCTCCATGTCGGC 29060 29 100.0 32 ............................. ATGTTCATGCGGTCCGAGCCGGGCATCTGGAT 28999 29 89.7 32 ..........T...C.............T CGCACCTGGCCGACCTCGTACCGGGGCCCCGT 28938 29 93.1 32 .............TC.............. GCGGTGAAGGCCCCGTCGTCGACGGTGGTGAC 28877 29 79.3 32 ...T..........C..A.......GT.T TACCGGACCAACGACCGGAAGGTGCTGGTCAA 28816 29 86.2 32 .......T.....T....A......C... CCGGCTCGACTGCGCCACCTGCACGTCGGCCG 28755 29 89.7 32 ....C..T......C.............. CGCATCGAGCAGGGCCACGCTGCGGGTACCCT 28694 29 100.0 32 ............................. GTCTCCTATTCCCGGGACCTGGCCGTCTCCCT 28633 29 89.7 32 ...T............T........G... GGTCCCGAGGAGCACGACGGAGACCTCGCGGC 28572 29 86.2 32 ............AT...A........T.. TTCTCCATGCTGCTCGGATAGAGGGCCAGTAC 28511 29 93.1 32 ....C.........C.............. GCCAACAATGGTGCTCGGCGGGTCCGTGAAGC CC [28501] 28448 28 82.8 32 ......TTT.....C......-....... GACACGCTCCCCGGCCCCGACGATGCCCGCTC 28388 29 93.1 30 ...........A..C.............. ACGGTGGCCATATGGAACGCGACCACCGCT 28329 29 93.1 0 ..........T...C.............. | T [28302] ========== ====== ====== ====== ============================= ============================================================= ================== 21 29 90.0 33 CTGCTCCCCGCGCCTGCGGGGATGGACCC # Left flank : AGGTTGGATGGACCCGGGACCTGGACCCCGAACTCGTCACCGGCTGGACAGAGGGGTACCAGGGTGCCGAGCGAGTGGGTGATGAGGAGTACTTCCTCTACGGCAAGGCCCAGTCGCCCACCACCCTGCGCCCCGAATACCTTCCGCACACTCTGAAGATCAGTCACACCCCGAACGCCACTGACGTCTACCTCCTCAACCCCTGCGTGCTCACCCCGGACGGAGAGTGGGAAGCCTGGTACCTTGCTCACTGGCTGCCCGGCGCGGTCCGTTACCCGTCCTTCTGGGACTTGATGAACGACGAGTACGAGGACTTCCACGGCGAACGCCGAGCGCAACAGGTTCACCCAGGCACCGACCGCACTGGCGGACGATCTACTGCTTAGACAGTCGCCCGTGACCGGCACGAGTGCCCCGAGAACCGAGCGCACCAGCTCTCTGAACTACGGTTTCAAGTTGGCGGAGGGGCACTGCTCGACACTCGCCGAGTGCCCGGTGGA # Right flank : GGTTTCCCTGGCAGGTGTGAGCTTCGGTCTTCGAGGTGCGAGCTATGTAGGTGGTGGGTTGTCGTGATGTGTGAGCTGTTGGTCAGGAGGATGCTGGCCTGGTGAGGATGAGGCCGCATGAGTAGGCGCGGGCTTTTCCGAGTCCGTTGGTCAGGGTTTGGGTGAAGTTTGCGGGGTGGGTGACGGTGAGGGTGCCGCGGATTTCGGCGCGGCTGATTTTGAGGCCTTTGTGGTGGTCGGATTCGACGGGGGGGAGCATGCGGATCGCGAGAGTGCCGCGGTCTACGTCGGCGCCGATGTGTCCGGTTGTGTTGTTCTGGTGCTGTGTGGGGTCTGTAGGGGGGAGTCGTGCTTCGAACCAGCGGCGGACGTGGTCGGGTCGGACGTGGGGGAGACGTTTGGAAGGTCCTCGGGTGGGAGTGGTGCCGGGGGCGGCTGTGGGGCGGACGGCGCGGACGGGGTTGATGACGGTGCGGAAGGTGTAGCGGTCGCCGGTAGCG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [21-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 31367-30542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027025.1 Streptomyces sp. WAC00288 plasmid p3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================== ================== 31366 30 93.3 31 ............CC................ GCCCCGGTCGGTGTGTGAGAGCCCGGCCGGG 31305 30 93.3 31 ............CT................ GTGGCCGGCCGGGACAGGACACGACGAAGCC 31244 30 90.0 31 ............CT...............A GGGCGCGGAAGAGGTTCCCGAGGAGCTCGGC 31183 30 90.0 31 ............CT...............C TGCCGGCCGAGTACGGGCGCGGGCCGGTCGA 31122 30 83.3 31 ........T...CTT..............A ACGTCCACGTCTGCTCGCGGTGCATGAGCCG 31061 30 90.0 31 ............CTT............... TAGGCGAGTGGGCGGCCGTCATCGGGGCTGC 31000 30 80.0 31 ...........CCCT...........T..A ACTCCGTCCGGATCGCCCTCGGCGGTCTGTC 30939 30 90.0 31 ............CC..............T. CGACTTCCCTGGCGACCAGGCGGCGGCGTGG 30878 29 76.7 95 ..........T.CT.....A.-.C.T.... TCCTTGGGGGACCCGTGCGGTTTGAGTGGTTTATCTGTTTCAGTGAAAGTAGTTCTGAGAGGGCTGTTGGTGGGGTAGAACTGCAGGTCAGGAAG 30754 30 100.0 31 .............................. TCGGCAGCATCTTCGTCAGCGTGTTCAAGGC 30693 30 93.3 31 ............................GT ACGACCTGGCGACGGTCGTCTTCGAAGGCAA 30632 30 100.0 31 .............................. TCGCCTCGCGGGAGATCCGGACGGTGATGTC 30571 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================================================================================== ================== 13 30 90.5 36 CTGCTCCCCGCGTGCGCGGGGATGGACCCG # Left flank : GGGTAGAACTGCAGGTCAGAAAGACTGCTCCCCGCGCCCGCGGGGATGGACCCCTGTCCAACTTCGAGATGGGCGCGGAACCGCTCTGCTCCCCGCGCCCGCGGGGATGGCTCCACCAAGGGCCGCAAGGACTGGCAGGGCAAGACCTGCTTTCCGCGCTCGCGGGTATCGCCTCGTTCTGTTGGTGGCGCGGCGGGTTCTGCGCTCCGCGGCCTGCCTGGCCGCTGCCCTCGGCCTGATCGTGGAGACGGCCCGGACTGCCCCGTTCGTTCTGACCTCTACGCCGGCCCGGTCTATGTCCTGCTCGCCCGGCCGCCGTCCCTATGGGGGAGGGCGGTTGTTCCTGACCGGAAGCGGGGGTCGGCTGGAACCTTGCTCTCGTCGGCATGAAGCGATCTGCCGTTTGGTAGGTGACGGAACATGTATGAGGGGGTTTGTCTGTTTCGGTGAAAGTGGTTCCGAGGGAGCTGTTGGTGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : ATTGAGCCTCTGCCAACCTGAATCCACAGGTCAAAGCGCTGGTGTGACAGCCTTCCGGGGTGCTCACATCGGTCGTGGGTGGCAGTCTGCGGCGTAGTTCGTTGGGCGGATCCTGAACGGTCCTGGTCAGGAGAGTGTGTCAGTGCTTGCCGTTAATCTTCCGCCGTGGGAAACACACCAGGTCGGGATGTTGGGTGCCGTTACGCATGGCGGGATCTGCTGCAGCGGTGGAGTGATGAGTGGCTCGATCCCGTGCTGCATGAGCAGGAACGGGCAGAGCCGTTTCCAGATGCCGTGCGCAGGGCCCGATGGCTGGGGACCACTGGAGTCACCAGCGGGGAACTCGGCGCACTCGAGAAGCGCCTGGGTGTCTCTCTGCCGCCGAGCTACCGGCAGTTCCTGCTGACCAGCAACGGCTGGCGCAGCACCACCCCGGACATCCACCGGGTCCTGCCGGCCCACGAGGTTGGATGGACCCGGGACCTGGACCCCGAACTCGT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGTGCGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //