Array 1 247913-244346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000003.1 Rhodomicrobium sp. Az07 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247912 29 100.0 32 ............................. TCATGGGTCAGCTGTTCGTGATTGCCGGGCTT 247851 29 100.0 32 ............................. CCGCCGTTTCCCCATGAACAACATCGCACACG 247790 29 100.0 32 ............................. CAACAGCAAACAAAACTTAGCGAAGATGCAGA 247729 29 100.0 32 ............................. GCTAGTCCGATGCCGAGGTCCGTTTTCCCGCC 247668 29 100.0 32 ............................. CGCCGGCATTGCGCCCCCGACGCGCGGGGGCG 247607 29 100.0 32 ............................. TCATGGGTCAGCTGTTCGTGATTGCCGGGCTT 247546 29 100.0 32 ............................. ACGGTGCAGACATAAATATAGTTCTCGTCGAC 247485 29 100.0 32 ............................. CGTTGCGAGCGCTTTAAGCGCGGTTGTCAGAT 247424 29 100.0 32 ............................. ATCGCGGTTTCGCCCGCCAGAAGCGGGGAAAT 247363 29 100.0 32 ............................. CCTTATCGCTCTGTCAAAACGACTGGTGATGT 247302 29 100.0 32 ............................. ACCGCTGATCTGGCTCGTGCTGACTTCAACCT 247241 29 100.0 32 ............................. CTCTTTCAGCCTCTCGGTGAGCTTGACGTACA 247180 29 100.0 32 ............................. GTTTGAAGGGCGCGGGCAAGCACATCAAGCAG 247119 29 100.0 32 ............................. ACACATTGGTTTTGTCAAATGTGTAGCAAAAT 247058 29 100.0 32 ............................. CTGCCCACAAGAGTAAGCGGCTCGACATTTAG 246997 29 100.0 32 ............................. CCGCGCGGGAACGCGCTCACCGTCTCGCTTTG 246936 29 100.0 32 ............................. CTTGCGGACGCGCTCGTCGTTACTTCAGAAAA 246875 29 100.0 32 ............................. GGAGCAGCCCGGCCAACTCATCGGCGAGCGCG 246814 29 100.0 32 ............................. GGGCTTCTTTGGTATGCGCTCAAATCGGGCGC 246753 29 100.0 32 ............................. GGGTTGATGCGCGACAGCGAGACGCGCGCTCC 246692 29 100.0 32 ............................. TCCTGGCTGTGGCGGTGGCTGTCCCGCCAGAC 246631 29 100.0 32 ............................. GCGGCCCACGTGTCGGGGTGGATACGCTCGAC 246570 29 100.0 32 ............................. ATTATTTCACCAGTTCTCGTCCGTGGGAGCAA 246509 29 100.0 32 ............................. CGATCCGCCGCCGACGTGAGCCCCGCCAGCGC 246448 29 100.0 32 ............................. AAACCCCGCGCTATGGCGGGGCTTTCCAGGCT 246387 29 100.0 32 ............................. TCAGGCAAAACCGCGTTTGCTCTGGACACTGA 246326 29 100.0 32 ............................. TCTTCGCCCGGGTGGTAGCCGCCGCATTCGGC 246265 29 100.0 32 ............................. GCCGCGCGGCGCCAGCGTGGGGGGGAGTGATT 246204 29 100.0 32 ............................. GCCTCGGATTTCGCGGTTCCGAGCAAGAGAAA 246143 29 100.0 32 ............................. CGCGCGTATCGGGACTCCTTCTACATCCGCGA 246082 29 100.0 32 ............................. CCGTTCGCCTTGGCTGCCTCGACGTTTAAGGT 246021 29 100.0 32 ............................. GAACGGACCGAGCTTTTTGATCTCATGGGCGC 245960 29 100.0 32 ............................. CCGAGTATCCAGAAGCCGATTTGCAGCGCGAC 245899 29 100.0 32 ............................. CATATGACATGCTCGCGGCATTCAAGGCGTTC 245838 29 100.0 32 ............................. TTGCGTCGCGCCAGTTGTGGGGGCGCGTGAAG 245777 29 100.0 32 ............................. GAAAACGCAGCGAGGTGGTCTGATAATTCAGT 245716 29 100.0 32 ............................. TTAGTTGAGGGCCAGTCAGTAAGTCGCTACTA 245655 29 100.0 32 ............................. GTCCATGCCTGACGGTCGATTTATTTACGGAC 245594 29 100.0 32 ............................. GGCAACGAGTGGACGCGCGTGACCCGCAACAT 245533 29 100.0 32 ............................. GAGGTGGGCGGGACTTGGCGGCCCCGCCCGAT 245472 29 100.0 32 ............................. CGTCCCGTGAGAACCGGGCCTCGATCCGGCTG 245411 29 100.0 32 ............................. CCACTCCGCCTGTTCTGGCGTTGGCTCCATCC 245350 29 100.0 32 ............................. CCTGGAAAAACTCGCGAGGCCAGCGGTGATAT 245289 29 100.0 32 ............................. CCGAGTCCCTCACTTCTGATCCATCGATAGAG 245228 29 100.0 32 ............................. CGTCACCTTACCGAGGCGCTTTCCGAGCCGAT 245167 29 100.0 32 ............................. ATTGCGCCACGGGGTAATCTGCAGGGTAAACA 245106 29 100.0 32 ............................. TCGAGCGCGATGAGCGCGTTGCCCATGTTCTC 245045 29 100.0 32 ............................. GTGTTGGCAAAGTCCACAAAGACCGCCGACGA 244984 29 100.0 32 ............................. CACACGGCTGCGCCGAAACTCGTGGTCGGCGG 244923 29 100.0 32 ............................. CGTTAGCCCTCGGCGGCGGGAGCCGTTACGCA 244862 29 100.0 32 ............................. GCAAATACCCCTATGAGGGCCTGATCTCCGAA 244801 29 100.0 32 ............................. CCGCGGCGGTTGTCGCGGCGGGACCGGATAGG 244740 29 100.0 32 ............................. GCCGAAAAATAAAGGGGAAACCGATTTATAAT 244679 29 100.0 32 ............................. TTATCGAAAATTACGTGCCGCCGCTTGGCCAG 244618 29 100.0 32 ............................. CTTGGCCTGTGTATCGCTGTGAGCGCTGTACG 244557 29 100.0 32 ............................. GCCCGGCGCGCGATGCGGCAAGGCGCCCTTGC 244496 29 96.6 32 ..........G.................. CCCCCTTGGGCGAGCCCCGCATGAATTGCAGC 244435 29 100.0 32 ............................. CCCGCCACCTCGATGAGCGGCGGATGCACGGT 244374 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 59 29 99.9 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CGCCCCCGACGCGCGGGGGC # Right flank : AGCAAGACGGCCAGCTGCCAGGAGATCGCTCTGTGTTCCCAGCATCCGTTCGATGCGGACCGGCAAGGTTTTCGGGAAAGGATCGCGAATGACAGGGGAAACCAAGACGCGCCTTGCCGTGATGGCGCTGGTTTACATGATGGTGAACGCCGTGCTGTTCGGCGCGGGCATGCTGCTTTTTTTGAACGGCGAGTCGATCGGCCCGCACGATCAGGCGAGCGCGGGAATCTGGAGCGTCGTTGCGGCGAGCTTCATCCTTGCCGCGCCGATTGCGTGGTGGCTGACGCCGAGGCTCAGGGCGCGGCAGGGGCGCCGCGGAGTGTCCGAACGGGATCGTATCGAGGCGGACGGCAAGAGATGACAGCGCGGCATCAGGCGCGCAAAAGCCCCCGGTTTTTACCCGGAGGCTTTTCATGCCGCGTGGCGAAAAGGGCCGTTCACGCCGCAGCGCTTGCGGACTCCGCCAAAGGCTCGCCCGCGTGGGCTCCGGCAAAGCGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84232-84081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000002.1 Rhodomicrobium sp. Az07 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84231 29 82.8 32 AC.A.GG...................... GCCTCCAGTGTGTCGTTGGTGAACCGGCCCGC 84170 29 100.0 32 ............................. GCAATTTCGCGTCCACCGCAGGGCAGTATGAC 84109 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GAGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CGCTCAGAATTCAAGCACATGGACTATTTCTACTTCCACAACTGCATCTACGAGGGCGTGTGGAAGAACAACGCGCGCCGCCACACCGAGCGCGTGCCCACGTGGGACGTGATTCACACATACCCGTCCGATTACAAGGTCATTTTCGTCGGCGATGCGGCGATGAGCCCGTATGAGATCGCGCTCGCGGGCGGCTCCGTGGAGCACTGGAACGAGGAGTCCGGGCAAGTCTGGATGCAGCGCATGCTCGACACGTTCAAGCACGCGGTCTGGCTCAATCCGACGCCCGAACGCTATTGGAGCGAAACGCCGTCGCTCCAGATGATGCGCCGCATCATGGAAGGCCGCATGTATCCGCTCACGCTCGACGGCATCGAGGCGGCCATCGCGGAACTGCTGCGATAACGCGAGCACGGCAAGCCGAAAGGCAGACCGAGCGCCGGAGCCTCGGAACCTATCCGATTCGGCCCGGTTCGATCCTTATCGAACAATCGCACGCC # Right flank : CTCTATCGCGGCTTGGACTGGACCGGTCTGACGCTTCCCAAGGAACGCCCAAACCGCGACGAGCAGGAACGGCCATTCACGGATGACGAAGTGAGGAAGCTTCTCTCCGGGCAGCCGCGCGAACGGTGAATGGAATACGTGGCGGCTCATCCCCGCGTGGGCTTGTTCGTGTCTGGCTTGTGGGCCGCGGGCCATTCACCGCTGAGGCTGCGATCTTGGGCAGGTCCGCGATGAACCTTCCCGCGACTTTCCGCGTAATGGCCTCGACCATCGGGGCCACCGCATGGGCCCTTGTCCAATCTTCCAGTTACCGCAATGTCCTTTTCTCGTCCCACTTGGTGCGTTCCTTGCGGCTAATAAGCATTTTAACGGTGAAGCTGCCGAAAGCGATAAGACCCTAAATGATCAGGCGGTATGCTTTTTTCAGCTTGCCCAGGCGGCGGATCTCGGCGCGCTCATCATCGGTCGAAAGGGGCAACCGACCCGGTTTGAGTTCAACG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5592-4526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000028.1 Rhodomicrobium sp. Az07 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5591 29 100.0 32 ............................. GAAAACTGGACATACGGGAACGATGAAAAAAC 5530 29 100.0 32 ............................. GCGGCGAGCGACGCGGCGGAAAAGGCTTGGCG 5469 29 100.0 32 ............................. GTGATTGCCCACACGGTGGGCGACGCGCCGCA 5408 29 100.0 32 ............................. GATGGCCTGCTTCTGCCAAGCCTCGAAAAGCG 5347 29 100.0 32 ............................. GCTGATTGTAAGCGTTCATTTGAAGGTTGCCG 5286 29 100.0 32 ............................. TCGCCGCGCGCCTACTCCGCAGAGTGGCTGCA 5225 29 100.0 32 ............................. TTGTCTCCGGTCATGCCGGACTGTCCTGCGTC 5164 29 100.0 32 ............................. GCGGCGTAGGCGTAGGGGCCGAATCCGGTCTG 5103 29 100.0 32 ............................. TCCTTCCACGCTTACGTGCAAGCACTGGTGGA 5042 29 100.0 32 ............................. GAAATACTGCGTGCAGAGAATGGTCGGCGGAG 4981 29 100.0 32 ............................. CGATAGGAAAGACCATGTTTCCCGAGGATTGG 4920 29 100.0 32 ............................. CCTGCATCGGCGAAACCTCGGAGTGGTACACG 4859 29 100.0 32 ............................. ATCGGCGTAGTCGTCGGCAACAATCTCATATC 4798 29 100.0 32 ............................. CACTCCAGCGGTTCGAGAGTGCCGCGCGACTG 4737 29 100.0 32 ............................. TGTCGGGAATGCCGCGCAGCACCTCGCGGCAA 4676 29 100.0 32 ............................. CTGAGCCGGATGTGGACCGGGACAAGCTCACA 4615 29 100.0 32 ............................. CTTAATGTCGGTAGATCCGAGGATCGCGATTT 4554 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GGTTCCCCCGCAGGCGCGGGGATAGACCC # Left flank : CCCGGTGGCGACCTTGAACGTCTTGTTCGCAGACGCGCGGCGGACGCCTTTGCGAAAGAGCAGGTCATCCCCTCGATGATCGACCACATCAAGCAAGTGCTTGGCGAGGACGAGTCGTGAGCCTCACCGTGGTAATCACGCGCGATGTCGAGATGAGATATCGCGGCTTTCTGGGATCGGCGATGCTGGAGATCGCGCCCGGCGTTTACCTGTCCCCGAGGATGTCGAAAGGGGTTCGCGAGCGGGTCTGGGGTGTTCTTCACGATTGGCACGGAAGTCTTGGCTCCGGTGCCATCGTGATGGTTTGGCGCGACAAATCTAAACCGGGAGATATCGCGATCGAGACGCTCGGAACACCGCCGAAAGACCTTATAGAGGCGGATGGGCTTCTCCTTGCTCGGCGCCCAGCCGGGAGTGATTCGGGCGTGCGTTGAAATTCGGGTTTTCCAGACTCGAGGTTCTTTGATATTGTAAACGATGTCATGAGCTTAGGCTCTAGA # Right flank : CTCGGAAAGAGTGTAGCCGTATTTGCGGACTTATGTAGCAAACGCAGGGAAGAACGATTTTAGCAAGCATGCTCCGGTTTGTTGTATTTTGTGCTTGCTAGTAGGCATGGAATCAGACATCTGATGTGCATGCTTGCTAGGAGGTTCTTCCGTGCCAAATTCAATTCAAAGCAAAGGTGGGAAAGCACGCGCCGAGTCCCTATCGCCCGACGAGCGGCGAAAGATTGCACGGCAAGCTGCGCAAGCTCGATGGAGTGCGTTCGATCAACAGAACGACGGGCCACTTCCCAAAGCGATTGCATCGGGCGTACTGCGAGTTGGCGAAATAGCATGCGCCGTCCTAGACGACGAACACAACACAAGGGTTCTTACTCAATCTGGTTTTCTAACTGCCATCGGACGATTCCCCAACCCTAAGAGCGCTTCAAATTCGGACCTCGCCCAGTTGCCAGCTTTTTTGCGCGCTAAGAACTTAGAACCTTTTATTTCCAATGACTTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGGCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 3309-3480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000004.1 Rhodomicrobium sp. Az07 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3309 36 100.0 32 .................................... TCCTGGTTCTCGCATTTACCGCGAACATGCTG 3377 36 100.0 32 .................................... GTGTACAAGATGTGCACAGGCATGCGTACGAC 3445 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 3 36 100.0 32 GTTACACAGCACGCCCAATGGAGGGTGACTGCGACC # Left flank : AACCGCTGCCAGCAGGCCTCGCCCAGTCGGTCGCGAAATTTCTGCTGAGCGGTGGTGGGCTTCTTGTCGCCAGTCGGCTTGCATGCGATCTTGTCGATCGTCGATATCCATTGAGCGATGACGAGTTCATTATGGCTTGCAGCAAATTCGGTGACTTCACGCTCAGCCCGTGGGGCCGAATTGGCGATCAATACCCTGCGCAGCTTTCCGTCGCGTTCCTTGCTGCGGCTCGTTCCATAGGGGTGAACAATTTTCATGAACAGGCTCCGACAAAATCGATCGGTAAAAATGCAGTCCGGATATTCAGGATACAGTCTATCACACTTTCTGGCGTTCCGGAACGAGGGGCTGCCGAGTCAGCAAGTCATTGCAGCAGCGAGGTATACCAGAAAAATATCGGGCGATTTCTTGCAGCAAACGCCGCCAAAAGCGGGGGGCTGGCGGAGAGTCGTCAAAACAGGCTTATTGCCCAAGGCCGATCAATGGGTTATAAGGGAGGG # Right flank : CCACGCCGCCAGCAAACTCGTTTGGACCGAAGTTACAGAGTGCGCCCACTGGCGGTGCATCATCTCAGGGTTGGCGGGGCACGAGCGGGCACTATTGACGCCAGCGCGATTCAGGCGCGGCGGCCACAAAAGCCACAATTTTAATTATGTCTTGCCCGGGAGCATCGCGTGTGCTCGGTGCTCATTTTTCAGTCTAATGATTATTAGAGGTTGTCCGTGGAATACAATCTTCTTGTGCTTGGCCCGATGGAGAAACGCGAGGGAGACATCGTAACCGGCAGAAGTATTACCCGACGTCTGGGGGAGATACTCCAGCAGATGTCTCGAAGTCTTCAGTCAGCAGGGGCGGCTTTTCGCGTGATCACGCCGGACGCTCCAAGCCAGAATGTCATTGTACAGATGGTGCTCGATTATGTGGAGCAGGCTGATCTTGTCGTGATCGACCTGACGGGAGGACGGCCAAACGTCGCCTACGAGGCGGCGATCATCCACGCGCTTGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACAGCACGCCCAATGGAGGGTGACTGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 81066-80047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000005.1 Rhodomicrobium sp. Az07 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 81065 32 100.0 34 ................................ TCGCTCCCAATGCCGGACAGCCGGGACGCAAGGA 80999 32 100.0 33 ................................ ACGAACCTGTCCGACAAGTTCGGGGCCGCGATC 80934 32 100.0 34 ................................ CGCGCGAGCTTTTGACGTTGGCTGCGACACGCGC 80868 32 100.0 34 ................................ AGGGGTATTGATCCTCTAGGTCGCTACATCCCTA 80802 32 100.0 33 ................................ GGAGATCGTGCCTTGACCCTCTCAGACCCTGCC 80737 32 100.0 34 ................................ TTCGGCAACTGGTTCGCGCGGTGCGACCTCGAAC 80671 32 100.0 34 ................................ TGAGAGCGTCCAGCGCTACCAGATGGTCGGGCGC 80605 32 100.0 34 ................................ CGCTGCACCTCGCGCACGCCTTCGCCGCGGTCGC 80539 32 100.0 34 ................................ GCCGATACCAGCCCTTGGATTTGAGAAAGGCCGT 80473 32 100.0 35 ................................ CGCCCGCGCGAAGCGCCACCGACTCGTCGCAGGCG 80406 32 100.0 34 ................................ AACGGAAGTGGCGAGCGTTAAGCTATCTTCCGAG 80340 32 100.0 34 ................................ TGGTTGGGCGCGGTTCCGTTAGGGTCGACGGGCA 80274 32 100.0 35 ................................ GCTGACGAAGCCGGCGGAGAAATAGAGCTGCGCGA 80207 32 100.0 32 ................................ TTCTGCCTTCCTTAACCCACGCGAGCGCCTCG 80143 32 100.0 33 ................................ GCTTGATGGGCCGGGATCGCCCTTGAAGCGGTC 80078 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : TACGACGTCAACACGATCGAAGGCGACGGCAAGGCGCGCCTCAGATCGGTGGCCAAGGCTTGCCGCGATTTCGGACAGCGCGTGCAGTTCTCCGTCTTCGAGATCGAGGTCGATCCAGCACAATGGACTCGCCTGAAGGCGCGGCTCGAAGCCATCATCGATCCCAAGTACGACAGCTTGCGCTATTATCATCTCGGAGCGAACTGGCAGCACAAGGTTGAGCATGTTGGCGCGAAGCCCGCCGCCGACCTCGGCGGTACGCTGATCGTTTGACGAGGTATCGGCTCCGCTGGCTCAAACCGTCGGTCTTTTTTTTAAATCGGGCGCGAACCCCAAGCGTATCGTCGCTTCCCGGCCGGTTCGCGCGAGAAAGGCTCTTTGAAATCGTAAGCTATTCCTTCGGGGCGATGGGGAAACCTTCGACTCCTGTGCTGCTTGAGCCGAGGTTCGCGCTGATCGGGGGCTTTTGGAATAGACGTCAATGCGTTAAACAGGGAACG # Right flank : AAGACCTTGGCTACATATCGCCATTTGCCGCTCTCCACGTGGGCGCGTCAGGCCAGGTGCGTTGCGGCTTCATCACCCGTTCAAAAGGCGCACCTGGCGCGCGCCGCGCCCGCTCGCTGTACTGTGTTTTTCCTGACCCTATGAAAGCTCTTCTATTGCCTTCAGCGCTGAGGCTTTGAGGGCGGGGAGATCGTCTCTCACAGTCGCCCAGATCTGGACACCGTCTATGGCATCATATTCGTGACGCAGGCGGTTGCCGAGGCCCTGAATCCCTGGCCATGGCAAGCCGGGGATGATGTTTTGGTCGCCGCGCTTGCGGATTCGGTCAAGGGCTTCGATAAGCCGTTGCAGACAGCGCTCGACGGCGTCTCTCGTCTTTTGCGTCGGCTAGGAAAGCGCTCTCTTCGAGACCTGCGACATAGGCCTCGATGACGTCGATGTTCTCGACGACCTGAGCGAGGTTTCGTGTTGTCTTAGAATGCGACGACGCGGTCACGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 406-4236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000036.1 Rhodomicrobium sp. Az07 contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 406 28 100.0 33 ............................ CCCTCATGGCTGACTACGACTCCGGCGTCATCA 467 28 100.0 33 ............................ CCACCACAGCCACACCTCTTGTGCAATCAGTCG 528 28 100.0 33 ............................ CTCCTTTTCCTCGGCCGTCATGAGTTCGTGAAA 589 28 100.0 33 ............................ CCCGGACAAGCCGAGCGTCCTGGGGCTTGCCCA 650 28 100.0 33 ............................ CGTGGTGAAGCCGGTCTGTGCGCTCTTGCGCAC 711 28 100.0 33 ............................ CGTTACGTCGCTATCTTTGACGCCATTGAGCCC 772 28 100.0 33 ............................ GTTTTTGCGCCCCGCGTTGCGGATCGAAGAACC 833 28 100.0 33 ............................ CTTCCTGCTCAAAGATTCTATGAGCGGATTGCG 894 28 100.0 33 ............................ TGTGCCGGGCGGGGCATGGACAACATTTGCGGA 955 28 100.0 33 ............................ CGTGTTTCTCAGGATGTCGCGGGCCTCGTCCTC 1016 28 100.0 33 ............................ CGCCGCATGGCTGATCGCCGAAGACGGGGCCGC 1077 28 100.0 33 ............................ CGCGGCTCCCTGTTTCCAGAGAGTAAAGCCTAG 1138 28 100.0 33 ............................ CCCAACGGCGCGGGGATACGACCGCTATGCATC 1199 28 100.0 33 ............................ TTTAACCGCCAGCTGCGCGGATCGTCAGACGAC 1260 28 100.0 33 ............................ CGCGTATCGCTATCGTCGCCGCCACGGACGCGT 1321 28 100.0 33 ............................ CTTCTCCATTGTCACCGCGCGTTACACGGCAAT 1382 28 100.0 33 ............................ CAAAAACAATGGCCGCAAATCCTCATGTGGTGA 1443 28 100.0 33 ............................ CTGGCCTTAGAGGCTTGCCCTTGCTCGTCAATC 1504 28 100.0 33 ............................ GCTTCGAGCGCGGGCATATGCGGCACAGCATAG 1565 28 100.0 33 ............................ GCCGGCACTTCGGCGGTCGTGGTCGACACCGTC 1626 28 100.0 33 ............................ CCGCCGCTTCCTCGCTTTCATCCCGCCTGCCCT 1687 28 100.0 33 ............................ CGTTCTGAGCGTCCTTGAGCGATGCGACCGGCG 1748 28 100.0 33 ............................ CGGCTTGTTGACCGCCGGTGTCGTCGGCGGCGT 1809 28 100.0 33 ............................ GGCCCCGAAATTGAATAGCCAAACGGAGCTTTT 1870 28 100.0 33 ............................ CGAAATCGCCTCATGGGAAATCGGCCCGTGCGC 1931 28 100.0 33 ............................ CTGAATAATTCCAGCCCCGAACCTGGGCGGCTG 1992 28 100.0 33 ............................ CGACTTCTCGGCCCACGGCTTGATGGCATTCGA 2053 28 100.0 33 ............................ GCGGGAAGGGTGAGCGAGCCGTTAAGCGCAAGC 2114 28 100.0 33 ............................ CATCGTACCAATTCAGCAATCCTGCGCCGGAGC 2175 28 100.0 33 ............................ CCGCGTTTTGCTGGAGTGATATTGGCCATAATC 2236 28 100.0 33 ............................ CTGACGCAACACCCCTACCACAACCTAGAGACG 2297 28 100.0 33 ............................ CCCCAATATGCGCCGCCGCGATCATAGCCGCCG 2358 28 100.0 33 ............................ CTCGCTTCTGAACCAACTCGTGGACGCTGGCAC 2419 28 100.0 33 ............................ GTTTTTGCGCCCCGCGTTGCGGATCGAAGAACC 2480 28 100.0 33 ............................ CATCAGCGCTTCGGTGCGGGCCGTGCCAGCCTT 2541 28 100.0 33 ............................ CCGGAGATACTACCGTGCGAATCGATCCGACGC 2602 28 100.0 33 ............................ GGCTGTGCTGTCGAAGATCGTGGCGAGCGCTTC 2663 28 100.0 33 ............................ CGGTCCATTTCTGCGCGCCCTTCTTGATCTTCC 2724 28 100.0 33 ............................ CGAAGCAAGCGGAAGCGATGGCGGAAAACGAGG 2785 28 100.0 33 ............................ CATCCGATCCTTTATGCGTTCGGCGCGATCTGG 2846 28 100.0 33 ............................ CCCGACGCCGTTTGTCGCCGTCAATACCAACAA 2907 28 100.0 33 ............................ GTTGATCCTGAACAACGCATACGGGAAGTTCGC 2968 28 100.0 33 ............................ CGGCGCTTTTTTAAGGAGGAATGAGGATGGATC 3029 28 100.0 33 ............................ CACTCCGGCGACAACACTACCACCGATTGCGAC 3090 28 100.0 33 ............................ TTTTGCCGTCAGTCGGCGCGCCTTCCAGTTTGA 3151 28 100.0 33 ............................ CGCCTCTTGCCGCATGGTGCAGCGCGGTGTACG 3212 28 100.0 33 ............................ CGGTTGGTAGATTCATCGAAGCTGCACCAATGC 3273 28 100.0 33 ............................ CGGCATTGGATCGTTCAGATCGGGATCGACCGT 3334 18 53.6 0 ...............AGA---------- - Deletion [3342] 3352 28 100.0 33 ............................ CCGATCAGGTCCACGAAACACACTTGCCGCGCC 3413 28 100.0 33 ............................ CTTTTGTCTATGAGGTTCCCGTCAGCTATTCCG 3474 28 100.0 33 ............................ GTAATCGAGGCTCGATTAAAGCCGCCGCGCAAG 3535 28 100.0 33 ............................ CGCCCCGAAAATATTCTGCCGACCTATAATCGG 3596 28 100.0 33 ............................ CTCGTCCGAGATGTAGCAGGCGCCCTTGAGCAC 3657 28 100.0 33 ............................ CCACTTCATCGGGCATCGACCACTGGTTGATCG 3718 28 100.0 33 ............................ TGCACAGTCATCGGCGGGAGGTTATAGCCCTCG 3779 28 100.0 33 ............................ CTGCAATGTCATCGGGCCTCCTTAAACGAAGTC 3840 28 100.0 33 ............................ CTCACCTCTTTCTCTGTTTCCAGTGCCCGCGTG 3901 28 100.0 33 ............................ GTTCCTTTCCTGCGATTGTACCTATCATATTCA 3962 28 100.0 33 ............................ CGACTGACTTTCCGTCTCGGACATTCCTATCGT 4023 28 100.0 33 ............................ CTGGCGTGGAGGCGTCGAGGTCACGCACACAAA 4084 28 100.0 33 ............................ CCCTTTCTCGGCCATCTTCTCGACCTGGCCGAC 4145 28 100.0 33 ............................ GTATCCACCGCGGTTGCGGAGATCCTCATCCCG 4206 27 89.3 0 ................-...C....C.. | C,G,GC [4226,4229,4231] ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.1 32 GGTTCCCCCGCAGGCGCGGGGATAGACC # Left flank : CATTTCCGCGCCGTCGCAACCCGATACGACAAGCGCGACGACAATTTCCTCGCATCCGTCAAGCTTGCGTCAGTCCGTATCTGGCTGCGGGCTTACGAGTCGGTGACCTAGAGCGTCAAGGATGATGCGGGAGAGTTCCCCCGGCTTGAACAGGTTCCCCGGCTTCGACGTTGGCGCTGTGTCGCCGCAAATGCGCAAGGCTTCTGTGATGGTGGCAAGGTCGCTTCGCGTCTCCTTGATCCTCTTTTCGAGGTCGGAGATTCGGCGGCGAAGCTCTTCCTGCTTCGCCTTCAATCCCGAGATGATGTGAGGTTCGGCCATCCTCTTGTTTTAGAGGACAACTCACTGACTCTCATGGATTTTCTTCCCTGCGTTTGCTACATAAGTCCGCGTATTTGCTCGACGG # Right flank : GAGACCAGTGGGGGTAATCTCGATCTCGGCCAGGTCGTCAGCCTCGGCGTCGGCCAGACCTTCCAGCAGATGCACCGGCACCATGACCGTGACGCCATTGTTGAGGTTGACGACCAGACGACCTTGATGGCGGTCATACTCTGCGGCTACAGCATAGCCGCCCTGCCGAGCCTCTTCCCCACGGGCTAGGAAGTGTGGACATTTATCGGATCCACAAGATGGTTGCTGCGAGAGCGATCATGGAGCGGTAGTTTCGGGCGGTTTTTTCATATCTCGTAGCGATGCGTCGAAAC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGGCGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 600-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000007.1 Rhodomicrobium sp. Az07 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 599 28 75.9 32 CG....AT.-...G..T............ GACGCCGATTTCCAGGTCATTCCGACAGCGTG C [580] 538 29 100.0 32 ............................. ACGACCGCTTCTGAGAAGAACTACATGTTCCA 477 29 100.0 32 ............................. AGATCGGGCTAGTCGTCCGGTCATTGCCGCGC 416 29 100.0 32 ............................. CTCGGCGGCACGACACGCAATGCCGTCATCGG 355 29 100.0 32 ............................. GTCACTTGCCGAGGGCGTCGCTGATATAGGTG 294 29 100.0 32 ............................. CCGCCGTTTCCCCATGAACAACATCGCACACG 233 29 100.0 32 ............................. TGCATGGCGAAATCAAGATCGAAAGCAAGGAA 172 29 100.0 32 ............................. ACCTGCCCGCGCGCATCCTCACGACCGGCCAT 111 29 100.0 32 ............................. CAACAGCAAACAAAACTTAGCGAAGATGCAGA 50 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : AAAGATATTCGGCGGTTCATCCCCGCGTGGGCGGGGAACACCCGGCAGCAACCGCTTCAGACCTAACCCATTCCGGTTCATCCCCGCGTGGGCGGGGAACACAAGAGATGGAAGACACGCTTCGTACAGAGAACCGGTTCATCCCCGCGTGGGCGGGGAACACGCTCTTATCTCGTGCTGCTACAGAAGCGCGGCCGGTTCATCCCCGCGTGGGCGGGGAACACCGTGCTCGCGGCAGCGATTTCGGTAGACCCGGCGGTTCATCCCCGCGTGGGCGGGGAACACGACATGGCCAAGATCAACGCACTGACGCACAGCGGTTCATCCCCGCGTGGGCGGGGAACACGTGATGTACGAAAGTAAACCAGGGGACGCGGCCGGTTCATCCCCGCGTGGGCGGGGAACACGTCGTAACGTTTAGTATTTTCAAGCGACAAATCGGTTCATCCCCGCGTGGGCGGGGAACACCAACTCGAAATTAGGTGTACCTCGCTCACGGA # Right flank : GGCTAGTCCGATGCCGAGGTCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4687-2218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZG010000007.1 Rhodomicrobium sp. Az07 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4686 29 100.0 32 ............................. CGCTTCGCGAGCTTCGGTTACAACATCGTCGG 4625 29 100.0 32 ............................. CGCAATCTGCTCGACGTTCGCCTTGCCGTAAA 4564 29 96.6 32 ............................C CACTCATGGCGCAGCATGGCGCGCGCGACAAC 4503 29 100.0 32 ............................. GCCGTGGCGTCCTCCCGGGATAGGTATAGGCC 4442 29 100.0 32 ............................. GTCAACCATGCGCTGGCGGGCGTCGAAGGCGT 4381 29 100.0 32 ............................. CAATGACTTTCGTCCTAGGCATAGACCCGGGG 4320 29 100.0 32 ............................. TCCTCGAAATCCTCGTGGAAGTTTGGGGCTTC 4259 29 100.0 32 ............................. CCATAGCCGTGATACGTGACCTTGATCTGCGC 4198 29 100.0 32 ............................. ATCCATGGGGATTTCGTCGAGCAGCATGTAAC 4137 29 100.0 32 ............................. CAAAAAGAAAGCTCGCAAACGTTACCGCTTGC 4076 29 100.0 32 ............................. CACGCGGCAGAACCATTGTGCATCATTAACAG 4015 29 100.0 32 ............................. CGCGGGGCGAGTCGCGTGGAAGGCCAAGACGG 3954 29 100.0 32 ............................. GACACGGGCACAGCCTGGCAGGGGCTTAACAC 3893 29 100.0 32 ............................. CGCTCGGCGTCAAGGCGTGGGCAAAGCACGAC 3832 29 96.6 32 ............................C AACAGCAAAGGAATAAGACCATGGCACTCGAC 3771 29 100.0 32 ............................. TCGTGGAAAACTATGTTCCGCCGCTCGCACAG 3710 29 100.0 32 ............................. ATTAACAGTCAATGTATTAGTTGTGATTAAAA 3649 29 100.0 32 ............................. CTCATTTTCGCTCTGTATTTGAGCAATATTGC 3588 29 100.0 32 ............................. GCGGCCAAGTGGGCGCGGCACTTCGCGGACCT 3527 29 100.0 32 ............................. CCCTCGGCCGTCTTGGACCCGATGTCGCCGCG 3466 29 100.0 32 ............................. GTCTTGCCGTCGTAGCTGTGGGGCTGAATGAT 3405 29 100.0 32 ............................. GTGGTGGTGATGGGCTTCCACATCGCTGCGCT 3344 29 100.0 32 ............................. GAATTGCTCAAGTCATGCCGCCTGAAAAAGTG 3283 29 100.0 32 ............................. CGTCGATGACTGGGCGCGCCGTCCAGAATTCG 3222 29 100.0 32 ............................. AACATGACGGCAAAGGCGCATTTGGCGTCACA 3161 29 100.0 32 ............................. CGAGGATCGTCGCATGACCAGCAAAATAGTCG 3100 29 100.0 32 ............................. ACGATGTCGAGACCTGTTGGCGGGCGATGGCC 3039 29 100.0 32 ............................. AACGGGGACGCTATCGCCGACACGGCGGACGG 2978 29 100.0 32 ............................. AAACTTTTTGCCGACAGCCTGTGCGCCGCCCG 2917 29 100.0 32 ............................. GAGCACATTCCGCCTGAGAAGGTGGATGCTGT 2856 29 100.0 32 ............................. GAACGGTAGTTAGAGCAACTGTTCGTGTTTTC 2795 29 100.0 32 ............................. ACCGCTACCGCGCCTGTTGTCGAAACCGCCGC 2734 29 100.0 32 ............................. ACGAAACAGGACGCTCTTTACGAACGGGCTTG 2673 29 100.0 32 ............................. TGATCACGCGGAAAGACGCCGCCGATCTTGCA 2612 29 100.0 32 ............................. GCCAAGGGCGACCAGGCGGCGCAAAAAGCCGA 2551 29 100.0 32 ............................. GTTATTTCCATCGTGGACGCAGTTTTAGTGCT 2490 29 100.0 32 ............................. CGAACTGACCCGCTGAAGTGCCCTCGGCTGTG 2429 29 100.0 32 ............................. CGGGTGAAGGATGCTGACGGTCACTATATCAA 2368 29 100.0 32 ............................. CCCATCAGCGCACCGCATACGCGACGACGAAA 2307 29 100.0 32 ............................. AGCGGATACTACGGATTCCGAACCGTTCCAAA 2246 29 86.2 0 .....................GG....AC | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.5 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CATCATTCCGCTGATCGAGGACGTGCTCAAGGCGGGCGGCCTTGAGCCTCCGGAAGAAGCGCCCGAGGGCGTGGAAGCGGCAATCCCGCGCGAGGAGGCATCCGGCGATGATGGTCATCGTAACTGAGAACGCGCCGCCACGTTTGCGGGGTCGGCTTTCGCTCTGGCTGCTGGAGGTGCGCGCGGGGGTGTATGTGGGAAATTACTCCCGGCGCGCGCGAGAGCGAATGTGGGGCGAGGTTTGCGCGATGATCGGCGAGGGCAACGCCGTGATCGCCTGGACGGCGGTGAACGAGGCCGGGTTCGACTTCGCAACCGTGGGTGCGAACCGGCGGGAGCAGGCCGATTTCGACGGGTTTCTGCTGGTGAAGTTCAAGCCCGCGCCGCCTGCCGAAGACCCGCTGAAGCCGCCGTTTTAAACCGCTGGAACGAAGCGGGAACTTCGGTGGCGTTCTTTGACATCGTGATTCGTTCGTGCGATCAATTCGTTACGAGGAAGA # Right flank : AGTTGCAGCCCGTTGCGCCGCGATCCGGGCGACGGTTCATCCCCGCGTGGGCGGGGAACACATCGTAAAGAGCCGCCTGAATCGTGTTTGTCACGGTTCATCCCCGCGTGGGCGGGGAACACTGCGGACGCGGAAGCAGCGAAGAAGAAAAACACGGTTCATCCCCGCGTGGGCGGGGAACACGCGCCATGGTCCGCAAGTTCCAGGGCGACAAGCGGTTCATCCCCGCGTGGGCGGGGAACACGCCCGAATGTGAGCATGCTCACCGCCTCTTTGCGGTTCATCCCCGCGTGGGCGGGGAACACTTTCGACTGTCATTTTCGTCTCCATCGTCGGGCGGTTCATCCCCGCGTGGGCGGGGAACACGACTGCATTGCAAACCGGATTTGGACCCTACGCGGTTCATCCCCGCGTGGGCGGGGAACACGAACGAGCAGCTACCCCTGTCCCATAGCGCACCGGTTCATCCCCGCGTGGGCGGGGAACACCGGATACCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //