Array 1 628-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGW01000104.1 Leptospira alexanderi strain 56659 Contig104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 627 29 100.0 32 ............................. CGCAATATTACTGCTGATATCTCAGTACGCCT 566 29 100.0 32 ............................. TTACATCACATAGGAATCTAATCCATCCCAAC 505 29 100.0 32 ............................. AGAAATTTTAAAACCTTAACACGGAGAAAACC 444 29 96.6 33 ............................A GAACGCACCGGAAGCCAAGGACTCCGCGCCTGA 382 29 100.0 32 ............................. TTATGACGATCCCGGTTATTCCGACGAAGCAG 321 29 89.7 0 ........................G.TG. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 CTATTCTCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTAGTTTTGATTTTGGAGAGGGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGACGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGAAGCCATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGACTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAACAGAATGGATTTTGACTTACAACACTAACCACTGATTCCTATCCACTGACATCTTGAAACATATGCGTGGGGTTGGATGGAAAACAGGATGGATTTTGACTTAAAACACTAACCACTGATTCCTATCCACTAACATCTTGAAACACATGCGTGGGGTTAGATGGAAAACAGGATGGATTTTGACTTAAAACACTGTCTTTGCCTGAAATACGTTGACCTTTTTTTCGCCTGAAAAAAAGGGAAAATGAACAAAAAACAAAAGTTAAACCATCTGCGAGAAGTATCGAG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 325-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGW01000031.1 Leptospira alexanderi strain 56659 Contig031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324 29 100.0 32 ............................. TTACCTAAAATTCGGTGTAGCGTCCATATCTA 263 29 100.0 32 ............................. GAATTAGATCGAAAACTTGAAACTGGTAAGAT 202 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTTTTCCCCACACACATGGGGTTGAACCG # Left flank : GAATCGTATGAAAACGGCGCATTTTATTCTATGTACGGCCCTCATTTCTGCTCAATGAACCTGACTCAGAAATTGCGATCGTCACACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATCGTTTTTTTACAACATTCAATTCATATAATTCCGATATACATAATATTATGATAAACAATTTCTCTCTTTCTAAACAAGTTTGTTCCCAACCCTTTCAAAATGATCGGTCCTCTTTCTTTGGATCCGAAATTCGTTTTCATGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTTATGCCCAAGCTAAGTCCAAATCGAAATCAGAAAGAACCTTAAATGATTCCGGTCTTTCAAGGTTTCTTGAAGAGGACAGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAACACAAGATCAGATCATACCTTTAAAAATAAACTCTAAGCTGACATAATATGTAAAATACTATACGAACTTTTAGA # Right flank : GAAAACAGGATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAATAACTAACATCTTGAAACGCACACATGGGGGTTGAATGGAAAACAGGATGGATTTTGACTTAAAACCCTGTCTTTGCCTGAAATACGTTGACCTTTTTTTCGCCTGAAAAAAAGGGAAAATGAACAA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACATGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 825-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGW01000095.1 Leptospira alexanderi strain 56659 Contig095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 824 29 100.0 32 ............................. TAGAATTGAAGAGAGCAATAGTAGAGGGTAGG 763 29 100.0 32 ............................. ACTCCCGAGGAAAGATTGGTTTGTTTGATCTC 702 29 100.0 32 ............................. CAAAACCACGATCATCGAATGTCTTATTTGTT 641 29 100.0 32 ............................. TTTTCGGCAACTAACAGCGTGCAAATGAAAAA 580 29 96.6 33 ............................A GAACGCGAGCGTATTTTTCTTTCAGATGAACGC 518 29 96.6 32 ............................C CTAACTTTTCGGCGGTTTCTTTGATCGTATAT 457 29 96.6 31 ............................C CAAAATCGACTCAGAACAATGTCTATGATTC 397 29 96.6 32 ............................C GATGTTTTCGTTGATATCTTCCCAAGCGGAAA 336 29 100.0 32 ............................. AGGAAATTGTAAACGCAGTTTACGACGTCGCA 275 29 100.0 32 ............................. GAGATTAATCCTCAATCTAATCTCCTTCCTGT 214 29 100.0 32 ............................. CGATGGAGAAAGGAGGATTTGCATCTTTGAAA 153 29 79.3 0 ..A...T.....TG............TG. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.1 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GACGTTCTGACTTTCTTCGAAGAACATAACGTTAAAGTTCAGACCGTTCTTACCCCAATGGTCGTAAGTATTGTGGAAGAGAGGATCATGTCCTTTCGAATTGTTTCTTCAGAAAGTAGAAATCGAACATAGAATACTCTCTACTTAACTCCACGATCATCATTACTTCGTTTTCTATATTCTGCGTTTCTATGGTTTGTAAAACCCGCATCACTTGGCGACGGCTTTTACTTTCACTCTTTTCAATTTTGTTTTTGGCTACTTTCCTTTTTTCCAGAAGAAAAAAGGTCAGCATTTTTTAGATGTTAGTTACTAATGACAACATCTAAAAACACAGGAGTTCCCGCACATAGAAGAACTCAAATTACGGGTAAAGTTACAAAAAGTTTCCTTAGAAGCACACGTTCTTAATAAGACGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTATCCTACACAAGTTTTTAGC # Right flank : GAAAACAGAATGGATTTTGACTTACAACACTGTCTTTGCCTGAAATACGTTGACCTTTTTTTCGCCTGAAAAAAAGGGAAAATGAACAAAAAACAAAAGTTAAACCATCTGCGAGAAGTATCGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 361-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGW01000100.1 Leptospira alexanderi strain 56659 Contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 360 29 100.0 32 ............................. AACTGGAAAGAGGCCAAAAGCCCAACAATCAG 299 29 100.0 31 ............................. TAGTATCTACTCTTCAGACTCATCATTTTCG 239 29 100.0 32 ............................. TCAAAACGCAAAACTACAAAGCGTCGTACTAG 178 29 100.0 32 ............................. TGGTTAGAGCAGCATGGGAAATACTAAATAAT 117 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : CTACCCGAAGTCTAAAACCCACATTCAAACCTCGGAATTCTCCGGGGTCTTTTTTATCCGTTTGGTCCTTAATTTCATAATTTGATTCAAACGTATCGGAGCCGGATTTTTCTGTAAGTTCAACCGGCGAAATCTTACTTTTTCGAATTTTACAAAAAAACACAACCGGCTTAGAATTTCTTCTTTTGTCGTAACAAGTTACACTACCCGAGTCTAGGATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGAGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTGATCTTTAGC # Right flank : GAAAACAGGATGGATTTTGACTTAAAACCCTGTCTTTGCCTGAAATACGTTGACCTTTTTTTCGCCTGAAAAAAAGGGAAAATGAACAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //