Array 1 70741-70059 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKT01000002.1 Akkermansia muciniphila strain GP21 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 70740 31 100.0 34 ............................... CGCTTCCGCTGGTGTAAGATAGTAGCGGTGGATG 70675 31 100.0 34 ............................... CGTCTGCCCGACCAGGGACCCGAACAGCCGCCCC 70610 31 100.0 34 ............................... CAGCCTGTGAAATTTCCGCTACTGTTCCGGCGGA 70545 31 100.0 34 ............................... CGATTACAATACACTGAAAACAAATCATCATAAG 70480 31 100.0 33 ............................... TTTTAGTTAGTGTTTCTTTTCTTTTCGTTGTCC 70416 31 100.0 34 ............................... CCTTGCATACCCTATCAGTAACGGTAAGCATGAG 70351 31 100.0 35 ............................... ATCAAGAATATGTTAGAACCCAAAGACTTGCAAAA 70285 31 100.0 35 ............................... TGCTGTCAGCCACACGGGCGAAACGGAAACAATCA 70219 31 100.0 34 ............................... CCCTTCAGATACACCTTTACCCGGCTACCGTCTG 70154 31 100.0 34 ............................... CTCCAGCATCACCGGGACGTCCTCGCCGCGGATG 70089 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.4 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 306200-302077 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKT01000004.1 Akkermansia muciniphila strain GP21 scaf-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 306199 33 100.0 35 ................................. CAGTCTGATATGCAATTCTGATATTTCTTTCATGA 306131 33 100.0 33 ................................. CTTTCTTTATATAGTGTTTGGTTTTGTTGTCCG 306065 33 100.0 35 ................................. GTACACCGCCCATGTGAGAGTTTCACCGTCTTTTA 305997 33 100.0 34 ................................. TATTGTTTTATTGTTGCTTACGTAGAGCGGCGTA 305930 33 100.0 34 ................................. TGCGTATAGGACGAGGGATAAGATACCCGCACCG 305863 33 100.0 34 ................................. TGATTAACCACGGCCGTAAAGTGCTTTGCCAATT 305796 33 100.0 34 ................................. CCATGTGTGCACCATGTCAAGGTCTTTAAGGGCG 305729 33 100.0 34 ................................. CTTTCTTTATATAGTGTTTTGGTTTTGTTGTCCG 305662 33 100.0 34 ................................. TCTATATGGTCCCACCAAGTTATGGGAACTATAC 305595 33 100.0 34 ................................. TTCTGGTTCAACTTAAACACAATACCATCAGTGG 305528 33 100.0 34 ................................. TTTATCGGTTGCGGTTTTTCTTCGGCTCCCAATT 305461 33 100.0 34 ................................. CGGAGGATTGATTTATGGCCGTAGGCATTGATTT 305394 33 100.0 35 ................................. CGGTCAATCCGGGTTTGCTGCGCCAGTAATCCGCC 305326 33 100.0 35 ................................. GGAATACCTACGTCGGAAAGCCGCGCCAGAGCAAG 305258 33 100.0 34 ................................. TTCGGCGACATACGGAAAACCTACAGGGCGGACC 305191 33 100.0 34 ................................. ATTTATTCACGACGCGAACTACATCGAGGTCAAC 305124 33 100.0 35 ................................. TGCTCGGTGGCAATGCGGCGCTGGTCCAGATACCG 305056 33 100.0 33 ................................. CGTCGTAGTCATGGCCCCCCGGATGGAAGTTAA 304990 33 100.0 33 ................................. AATGGCGCGGTCGTAGTCGATGATGACCAGGCA 304924 33 100.0 34 ................................. CAAATACATCCGGGCGTTGCCTGACCCGCATCAT 304857 33 100.0 35 ................................. ATCAGAGCGGGGTTCTGGCGCAGAATGTCCGTCAA 304789 33 100.0 33 ................................. CCGCTCTCCTTGGCGTCGCATCCAGGGATTCCA 304723 33 100.0 33 ................................. CGCTACTGCTTTGAAGGATGCCGCTTTTTTTAG 304657 33 100.0 35 ................................. GATTGAATGCAATGGCCTATTCTCTGCCCCGGAAC 304589 33 100.0 33 ................................. CGGTCTAAAATTGGCGTGATGTTCGGCAATCCG 304523 33 100.0 34 ................................. CTTGATAGTTATATTTCATTCATGCCTTACGATA 304456 33 100.0 34 ................................. CCATCATGGAACATCAATAAAAACAACACTCTCA 304389 33 100.0 34 ................................. CGCTTTTTCGTCGAGGCTCGTGCTTTGAAGGATA 304322 33 100.0 33 ................................. GGGAAATTTTAGCCGAATTGGGGATAGATGCGG 304256 33 100.0 31 ................................. GGATAATGCGCCGTTGAAGAAGATTCAAACG 304192 33 100.0 34 ................................. CGCCTGAACACATAGGCATGTTTTCCGGGGCGGT 304125 33 100.0 35 ................................. GGCATGTGTCCGGTTGCGGCATTGATGGACAGGAT 304057 33 100.0 34 ................................. CTCGTCATACCTTGGCAACCCCATTTCAATACAA 303990 33 100.0 34 ................................. CCACATGCTAATCATGTCCAGGTCCGCAAGAGCT 303923 33 100.0 34 ................................. CTGCTCTATGATTGTTTCAACCGCACCCGTGTGG 303856 33 100.0 36 ................................. ATAATCCCATGAGGCAGGGGCTTGTGAATCATCCCA 303787 33 100.0 34 ................................. CACCGCGTCTAAGTAGTTAATGTCACCAAGGCGG 303720 33 100.0 34 ................................. CTTTTAGTTTTAGTGTTCTCATTTCCGGGGGGTT 303653 33 100.0 36 ................................. CGGCTCTATGATTGTTTCAACCGCACCCGTGTGGCT 303584 33 100.0 34 ................................. AGCTTGTGCGGCGGGCAATCCGGCGCCGTATGTG 303517 33 100.0 33 ................................. ACCATCGTTTAATTTGATTTGATTGTTCATTGC 303451 33 100.0 34 ................................. CCACATGTGCATCATGTCAAGGTCGGCAAGAGCT 303384 33 100.0 35 ................................. AATGCCCTCATATCCATTGAAGCAGCGTTCGATAT 303316 33 100.0 33 ................................. GTTAGGTTTGTTGTTTTAATCCCAATCCATAAC 303250 33 100.0 34 ................................. AGGGTCGATGATGCCAATAGAGTTGCCGAACATG 303183 33 100.0 33 ................................. CACCTGTTCCCGGTTCCCGCGCAGCTTGACCAG 303117 33 100.0 35 ................................. GTAAGCCTAGCCTAACATTGTAAGTGCCGTCTAAC 303049 33 100.0 34 ................................. TCATTTCCGCCGTCTACGGCGGTGGCTAATCCTG 302982 33 100.0 35 ................................. ATAACTATTAAGGATTCTTAAACATTCCCCGTGTA 302914 33 100.0 33 ................................. GTTGATAATCATTGTTTAGGTCTCCTATCTATT 302848 33 100.0 34 ................................. GCATAATACATATAATGCAAAATAGCAATCTGGT 302781 33 100.0 34 ................................. CGGTGGGGTAGATAACGGTGGTATAGGCAACTGG 302714 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 302647 33 100.0 34 ................................. ACTGTTCCGGGGGGGTTGTCCCCGTTGATGATTG 302580 33 100.0 36 ................................. CACGTGGAACAATTACAATTCCAAAGGAATCCAAAG 302511 33 100.0 34 ................................. GTTTTGTTTTTGTAGAGTTATGTGAGGTTTCTAA 302444 33 100.0 34 ................................. ATTGAAGATGCTACAGAATACGGAGTGGAACGCT 302377 33 100.0 34 ................................. TTTTTTTGAGTATTCGAAGCCGAACACGTGAACT 302310 33 100.0 34 ................................. CCGTACAGAGGCGCACAATGTTTGTATGCACTCC 302243 33 100.0 34 ................................. GTGATGAAGCAAATAAATGATGCCGGTGGCAATG 302176 33 100.0 34 ................................. AATGTAAAGTAGCTCAACGTCATTTCCGAATCGT 302109 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGTAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTTGGGCGCA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGAGTGATTATTGAAATTGAGTTCCGCGGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTGTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGGCTGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTGGGGTGCAGGCGTGTAGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 316913-314671 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKT01000004.1 Akkermansia muciniphila strain GP21 scaf-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 316912 31 100.0 34 ............................... GCAAAATCATCCTCGCAAGCCCGTCCGGTAGCCG 316847 31 100.0 34 ............................... ATGGGAGGGAACAATCAAAATGGGACGCCTCTGC 316782 31 100.0 34 ............................... ACCGCCAGGCCGGGAAAAGTCATCATCGAATGCG 316717 31 100.0 34 ............................... CGCTTCGGCGCGTCCGGCATGGGGGTCGTCGATG 316652 31 100.0 34 ............................... CGGTTTTCCCGGAATCGTAGTTGCACATTTTCGA 316587 31 100.0 34 ............................... TTTTCCGGAAACGCTCATGAGCCTGGTGTTGATT 316522 31 100.0 34 ............................... CGGCTGGTCGAGGGTCTTTTTTTGCTCATTTAAT 316457 31 100.0 35 ............................... TTTTCTAACAGGTTTTTTGTTTTTTCTCTTAGGAG 316391 31 100.0 34 ............................... TTTCAGGTGCAAGGAATCTCCGTGGACGACTGTT 316326 31 100.0 34 ............................... CGTTTTTTAGTGATATAAAAAAGCCATCACAGAG 316261 31 100.0 34 ............................... GTTGCGCACCCGTCGCCGCAGGCATTGATTGACG 316196 31 100.0 34 ............................... TTTCCGTCCGCGGCTTTATCGCCTTTTACCGCCC 316131 31 100.0 34 ............................... CATATCATAATCGCCCGTTTCCTCGTCATACCTT 316066 31 100.0 34 ............................... GCAATGGCACGAGCGCGGCAGATGGTCTTTGGAG 316001 31 100.0 35 ............................... CAGATACTGGTTAATTTCCTCCGGGTCATAGGTAC 315935 31 100.0 35 ............................... CGCTTGTGCGGCGGGTAGTCCGGCGCCGTAGGTGA 315869 31 100.0 33 ............................... CTTTCATTTTAGTTTAGTTTAGTGTTTCTTTTC 315805 31 100.0 34 ............................... CCGGTGAAGGACAATCTCCCATGTACTATGAGGC 315740 31 100.0 34 ............................... CATATTGAACGCCCATGCGAAGGCTTGACGGGCG 315675 31 100.0 34 ............................... GGTTCCGTTGCCACGAGTAACGGCACGGACAAGC 315610 31 100.0 34 ............................... CGAAGTGAACAAGGCCATCCCCACTATCCCGACT 315545 31 100.0 34 ............................... CGCATACTCATGGCATGCGCCCGTGTACTTGCTA 315480 31 100.0 34 ............................... ATTGTTTTTGTTCCTTTCATTTTAGTTTAGTGTT 315415 31 100.0 34 ............................... AAGGAGAGTGTGCAGGGGTTCATCCTTTGAAGAG 315350 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 315285 31 100.0 34 ............................... ACCCGGAGGGAAAGAATTTAAGACATTGTATCTG 315220 31 100.0 34 ............................... GTTTCCCCGGTGCGGGTGATTTGCGTGTATGCCA 315155 31 100.0 34 ............................... AGGTTATCAGATTTTATTATCTTGTCAAATAATT 315090 31 100.0 34 ............................... GGGCTGGTACCCGTTGAAGCTGAATAACTACGCC 315025 31 100.0 33 ............................... AATGTCCTCAGGGGAAAGGCTTTCATCTTCCCC 314961 31 100.0 34 ............................... TTTGTATTTTGAGCCATTACCCAATTGCTTTTTG 314896 31 100.0 34 ............................... AATGGCTTCACCGGGTTCCGGGGGCGCAAAGGCC 314831 31 100.0 34 ............................... CCTGTTGCTGTCATGTCCCGTTTCAACGGTTCCG 314766 31 100.0 34 ............................... CCTGAAAAGCGTGGGGAATCTCTGAGGCGCGATT 314701 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 35 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GTCGTAGACTGAACGACCTAATATCCCTGGAATAAGAAGGAGCTGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCGTCCTCGGAGACTTCAATGGAGTGGTGGACTTTCGCAGAAGAATATTGACCACTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGTGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGAACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //