Array 1 11297-10332 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGE01000011.1 Lactobacillus helveticus strain IMAU40088 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11296 32 100.0 35 ................................ TTTTTCGTCTTCTGCTCCTAGTGACTTAGTGAGCC 11229 32 100.0 35 ................................ GATTATTCGGAACAACAGATGATCCTAAATGCTCA 11162 32 100.0 35 ................................ TTTTTCAATATCCTCTGCTGCACACTTAGTACAGA 11095 32 100.0 35 ................................ ACTAAGGGCTGGCAAGCAAAGAAGCCACCAAAGAG 11028 32 100.0 34 ................................ GTTCCAATAAAGAGCCTGTGAGCGGATTTCTCAC 10962 32 100.0 35 ................................ AACGTTAATGGTTTTTCTGAATATTTACTATTAAA 10895 32 100.0 35 ................................ TTACTAATGTTAAGGCACTTGGCTTCTGCTAAACA 10828 32 96.9 34 ....................A........... AAAGGTGTGTGGATACCTGCTGAATATTGGTTAG 10762 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 10695 32 100.0 34 ................................ ACCTGATCAAACGTTAGGCAATAGATTAACCGAA 10629 32 100.0 34 ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 10563 32 100.0 35 ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 10496 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 10429 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 10363 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ =================================== ================== 15 32 99.6 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GCAATAATTGCTTAGTCGCACTCCTTGTGAGTGCGTGGATTGAAATACAAATATGTCTGATGCTGTTGACGAGGAAATCAGGTCGCACTCCTTGTGAGTGCGTGGATTGAAATGATTTTGTTAGAAAATTAACCGATGATTTTTTACAGTCGCACTCCTTGTGAGTGCGTGGATTGAAATCATTGTAGTAAAAGTTGCAGGGTCTTGAGTAAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATAATTGCTTA # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12246-11617 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGE01000011.1 Lactobacillus helveticus strain IMAU40088 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12245 32 100.0 34 ................................ AATTAATCCCTGATTGTCCTGCTCCCAATATGAG 12179 32 100.0 33 ................................ AATGACTTTTTTAACGATCTGTTTGACTTTGAC 12114 32 100.0 35 ................................ ACGGTTATGAGCAAGAACCTGATAGAAACAATGGC 12047 32 100.0 34 ................................ AACTTGTCAAGCAAGTAAAGACGGAAAAATCAAA 11981 32 100.0 35 ................................ TACCTAGTTTTAACCCTGGATAGGGCACAGCACCA 11914 32 100.0 34 ................................ CAAATTAGTTGCATGATTGTTAAACCTGTTTTCA 11848 32 100.0 34 ................................ AATTAAGTCTAATCATAGGGGCAATAATTGCTTA 11782 32 100.0 35 ................................ ACAAATATGTCTGATGCTGTTGACGAGGAAATCAG 11715 32 100.0 35 ................................ GATTTTGTTAGAAAATTAACCGATGATTTTTTACA 11648 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : CATTGTAGTAAAAGTTGCAGGGTCTTGAGTAAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATAATTGCTTAGTCGCACTCCTTGTGAGTGCGTGGATTGAAATTTTTTCGTCTTCTGCTCCTAGTGACTTAGTGAGCCGTCGCACTCCTTGTGAGTGCGTGGATTGAAATGATTATTCGGAACAACAGATGATCCTAAATGCTCAGTCGCACTCCTTGTGAGTGCGTGGATTGAAATTTTTTCAATATCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //