Array 1 456541-457168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 456541 28 100.0 32 ............................ AGCTCGCGGGCGAAGTAGCGGTTGCCGATGAA 456601 28 100.0 32 ............................ TCCAGGCGCTCCAGATCCTGGGCGGCCAGGGC 456661 28 100.0 32 ............................ TGCTCGCTCAGCAGGGCGCGAAGCTCTTCAAT 456721 28 100.0 32 ............................ GTGCAACGCTCAATGAATCGAACGCAACTGCT 456781 28 100.0 32 ............................ ATCTATCCAGGCCAGCCACGTGCCGGGCAATC 456841 28 100.0 32 ............................ TCATCGTTGGGCCAGGAGCTTCGCCATCCAGG 456901 28 100.0 32 ............................ TAGACGACCTGCTGGCGCTGACGCTGTTGGGC 456961 28 100.0 32 ............................ TCTGGCTGCTGGGTGAGATCCTGGCGAATGTC 457021 28 100.0 32 ............................ TGGCTGCCGCGGCCCGGGTCAGGGGCGCATAC 457081 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 457141 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.1 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGGCCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGTGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTGAAAATCAATAACTTACCAAGACACGAAAAAAGAAGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATAAAAGTTAAAAAATCGTGCGGCCTCGTATCTACGACAGCGGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGCGATCTATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCCCTCTGCCGGGTCACGGCACCAACCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1592746-1593193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1592746 28 100.0 32 ............................ AACGGCTACGGCAGCACCGGCAAGTAAATCCC 1592806 28 100.0 32 ............................ TGGTCATGCGCCGAGTCGTCCAGGAACAGGCC 1592866 28 100.0 32 ............................ TGAACGGTGCCGGCCAGGTCGCGGCGCTACCC 1592926 28 100.0 32 ............................ ATAAGGCCGACCGCCTCGTCGCGCATCATGTG 1592986 28 100.0 32 ............................ TGCGTGAACTCAAGGCCTTGGAACTCGCTCTG 1593046 28 100.0 32 ............................ TGGACGAGGTGGGAAAGGTCTTGCTCCAGGTC 1593106 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 1593166 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTTGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1602529-1601721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1602528 28 100.0 32 ............................ GCAAGCACACGCTGAAATCGATCCTGGGTGAA 1602468 28 100.0 32 ............................ TCTGATCATGAACGGTGCGACCATCGGGATCG 1602408 28 100.0 32 ............................ TTCTGGCGCGGCAGCAGCCGGCCGGACTGGAC 1602348 28 100.0 32 ............................ ACGCAGAATGTCTCGGATGCGAAGTCGTTCCG 1602288 28 100.0 32 ............................ ACCGGCACTTCTACGCGCACCGTGCGCGGCTC 1602228 28 100.0 32 ............................ CGTTGCCCGTTGTGGCCCCGCTCGATGATGTA 1602168 28 100.0 32 ............................ TGTAGGTCGTCGCCGGCATTACCTCGGGCCAG 1602108 28 100.0 32 ............................ TTTGCGATTGCGGCTCGGGCCAGGGGAAGCGC 1602048 28 100.0 32 ............................ ATTCCGGTAGAGGCTCCGGTAATGCGGCTATT 1601988 28 100.0 32 ............................ GTGGACAACGAAAACGAAACCCTGGTCGCGCT 1601928 28 100.0 32 ............................ TTTGCGTCACGAAACTCCGGCCGGCGAAAATC 1601868 28 100.0 32 ............................ GGACAGGCGGGGGGCTATGTCGATAAACACAA 1601808 28 100.0 32 ............................ TGTATGACGACAGCGAGACAGGACGCTGCCGC 1601748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCTCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1984716-1983966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1984715 28 100.0 32 ............................ TGGCTCACCTCGACGAGATTCGCGCCGAGCGT 1984655 28 100.0 32 ............................ TAGCTGAGGTGTCTCCGATTGAGCGCCTCTTG 1984595 28 100.0 32 ............................ ACACAGAGAAGCTTGGTCAAGAGGCTGGATTT 1984535 28 100.0 33 ............................ CATGAGCTAATGACTGCCGCAATCGCAAAGGCA 1984474 28 100.0 32 ............................ CCAGCGCTTGAGCAGACCGGCGCCCTGGGCGA 1984414 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 1984354 28 100.0 32 ............................ AGTAGCTGGCGCCCAAGCAGAACATGCCGCAC 1984294 28 100.0 32 ............................ ATTGAACTGTTGATGGAGCAATGCGAGCCAGA 1984234 28 100.0 32 ............................ TGAAAGAGGCCGCCCAAGTCCTGATCTTCGGC 1984174 28 100.0 32 ............................ TCGTCTATCTCGGCCTGACTCGCGACGCCGGA 1984114 28 100.0 33 ............................ GGCAGCAGTGGTCGCACCGGTCTGTTCCTTGAG 1984053 28 100.0 32 ............................ ATCAGGCAGCACCGGCTCCATGCTGTTGCCAC 1983993 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGATTGATCGCCGTCCTGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGCGGTAGCCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAGGTAATGGCTAATGTCCCGCTGGGCTTCTTGCGCCGTCAGGTAGCCCGTCGACGGGATCCACTCCGACTTCAGGCTGCGGAACAGGCGCTCCATTGGCGAATTGTCCCAACAGTTCCCTCGACGGCTCATGCTCTGCTGCATCCGGTAGCGCCAAAGTCGCTGCCGGAACAGACGACTGGCGTACTGGGCGCCCTGATCTGAATGAAACAGCACCTGCTGTGGCTGGCCGCGTTGTTCGTAGGCCATGTCCAGCGCCTTGATCACCAACTCGGCGTCCGGCTTGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 6265330-6266318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029660.1 Pseudomonas aeruginosa strain AR_0446 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6265330 28 100.0 32 ............................ ATTATGCGAGGCCACAACGGCCCCAGGATCGA 6265390 28 100.0 32 ............................ TTCACTGGCTGCGCATGCGCGGCGAGGTATCA 6265450 28 100.0 32 ............................ CACAAACGACCGTACAGACGCTTGAAGGCTTG 6265510 28 100.0 32 ............................ AGTTCGTATTCGCCGCTGGCGGTCACGTCGCC 6265570 28 100.0 32 ............................ TCGATCTTCTCGATCTGCGCCTTGCTGGCTTG 6265630 28 100.0 32 ............................ TGGTCGATGGCCTCACGATCGAGACCACCGAG 6265690 28 100.0 32 ............................ AGCGGCTTCTTCCGGTTGCGGATCGACTGGCC 6265750 28 100.0 32 ............................ ACTCCCTGAAGGGGGATCTTGCCGGATACTGG 6265810 28 100.0 32 ............................ GGTTCCTCATCGAGGCCAGGAAACTGCCCGAT 6265870 28 100.0 32 ............................ TGGTGCGCCTGCAGGGCCAGTTCGCGGTCCTG 6265930 28 100.0 32 ............................ TGTGGGTACAGCAGCAGCGCATCGACCTGGCG 6265990 28 100.0 32 ............................ TTGTAGATCTCCTTGCAGGTATCCCACGGCAC 6266050 28 100.0 32 ............................ AGTATGCGTCTGGGTTGGACAAAGCCCTGGCG 6266110 28 100.0 32 ............................ ATGCGCTGGATAGCGTCATCCTGCGCCCGAAC 6266170 28 100.0 32 ............................ TGCATCAGAGCCGGGGGCGGCTCCGGCATGCT 6266230 28 100.0 32 ............................ TCATCGGTGAAACGGTCTCGGCTGTCTCTCGA 6266290 28 82.1 0 ......................G.CTTC | C [6266310] ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCAACCGCTTCCCGCACAACGCCACGCTGTACCTCGACAGGCGCCGCCCGGCCAGTTGTTCGAAAGCGCGAAAACACGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTTAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGTGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTTCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //