Array 1 164114-163291 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWH01000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain 65_16 NODE_11_length_164143_cov_17.1728_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164113 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164052 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 163991 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 163930 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 163869 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163808 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163747 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163686 29 100.0 32 ............................. CTATGAGCACGATCATCACCGCACTGGCGCAG 163625 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163564 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163503 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163442 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163381 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163320 29 100.0 0 ............................. | A [163293] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTGGCTGACGCGCACCGAGCCGCCGCAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52575-54798 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWH01000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain 65_16 NODE_22_length_73073_cov_17.3597_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52575 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 52636 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 52697 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 52758 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 52820 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 52881 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 52942 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 53003 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 53064 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 53125 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 53186 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 53247 29 100.0 31 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAAC 53307 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 53368 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 53429 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 53490 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 53551 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 53612 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 53673 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 53734 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 53795 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 53856 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 53917 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 53978 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 54039 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 54100 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 54161 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 54222 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 54283 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 54344 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 54405 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 54466 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 54527 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 54588 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 54649 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 54710 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 54771 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 97.9 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72427-73064 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWH01000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain 65_16 NODE_22_length_73073_cov_17.3597_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72427 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 72488 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 72549 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 72610 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 72671 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 72732 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 72793 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 72854 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 72915 29 100.0 31 ............................. TTTCTGACTTTTGAGGGGATATTTAGACGGG 72975 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 73036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : AGGGCTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //