Array 1 4194-3234 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL544621.1 Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 strain KCTC 3167 scaffold00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4193 36 100.0 30 .................................... TTTTCCGTGCAGATTCCGCAAAATATCTTT 4127 36 100.0 30 .................................... TAAAGCCGAGTATTCCCACGGTAGCGCCTT 4061 36 100.0 30 .................................... TTAGAGAAAAAATTCATAGAAGTCATAGCT 3995 36 100.0 30 .................................... ATACCATCAGGCTGTATTGCTAGGCTTGTG 3929 36 100.0 30 .................................... ACAAAATCAGTATCGCTGTTAATCATTGGG 3863 36 100.0 30 .................................... TTATTGAAGATGCAACAAATGATGTCAAGA 3797 36 100.0 30 .................................... GCTTGTTTGCTGATAGCGTCGGCTCGTAAT 3731 36 100.0 30 .................................... ATTGCACTTGATGATACTGGGCAAGATGAG 3665 36 100.0 30 .................................... CTTTGAATAGTATTAATGATGACATTAATC 3599 36 100.0 30 .................................... AAAGCATTGACTGATAAGTCTTTCATTCAG 3533 36 100.0 30 .................................... CACAACTTAAGGAGCGCTCAGAACCACAGT 3467 36 100.0 30 .................................... CAACTGGTATTGATGGTTCGCAAGATACTG 3401 36 100.0 30 .................................... ACCTCTAAGTTATCAAGTTTTAAGTCATAT 3335 36 100.0 30 .................................... AGCACTAGCTTGACTACCGGCGGCACTAGC 3269 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GCTATTGATTCCTTCAGTTTTCAGCTAAAATAGATC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTCTAACTAAAACAGACCCTAGTATTGCCATGCCTTGATTATACCCATTG # Right flank : GTCCTAAAAACGATATAACCGGCTTGAGCCGCTATTGATTCCTTCAGTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATTGATTCCTTCAGTTTTCAGCTAAAATAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 109840-107825 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL544592.1 Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 strain KCTC 3167 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 109839 36 100.0 30 .................................... GTCGGTTAAAATTCCAGTGGCTGCCAGCAA 109773 36 100.0 30 .................................... CGAAGCGCTGGAAATTGCTCCTATCGGTCA 109707 36 100.0 30 .................................... TGATTCGTCAGAAATTCTTAAATCGTATTT 109641 36 100.0 30 .................................... TTTTTGAAATGCTGTTGATCGATGTTTAAT 109575 36 100.0 30 .................................... GATCATTAAGCCGATGCTCATGATCTTTGT 109509 36 100.0 30 .................................... ACCGAACGTGATCGTAACCGCCACCCTCTA 109443 36 100.0 30 .................................... AAAAGAAATGACAATTAAGTATGAGTGCCA 109377 36 100.0 30 .................................... TTACGTTAGGGTTTTTAGCTTTGAACTGTT 109311 36 100.0 30 .................................... TAAAAATCAATTCTGGTTTTGGAAAGCCAT 109245 36 100.0 30 .................................... CATAATTTTCTAAAATTTTCTGGCAATCGT 109179 36 100.0 30 .................................... TTATTTCAAAATGGGAATCTATAACTTGGC 109113 36 100.0 30 .................................... ACCGTCACTAAGCCGCCTGAAACAGTAGCT 109047 36 100.0 30 .................................... AATGGATTGATCCCATCGGACTTAGCAACT 108981 36 100.0 30 .................................... GTAAACGGCCGCTTGAAGGCGCCCTGACTG 108915 36 100.0 30 .................................... TACGTATGAAAGCACGATTACATTACCAGT 108849 36 100.0 30 .................................... TCCGGTAGATCCGTCAGTCCTGGAGACGCT 108783 36 100.0 30 .................................... ATACGCGGTCACAAAAACACCCCAAGGGTA 108717 36 100.0 30 .................................... TTGTCGTACCCACATAAGTTTCACCTTCCT 108651 36 100.0 30 .................................... GGCAGATTAATAATAGCGGTATCGTCATCA 108585 36 100.0 30 .................................... GGGAGTATCATAACCACCCATATCAGTCGT 108519 36 100.0 30 .................................... GGCTGCTTAAGCGTGCTTAAGGCTTGTCTA 108453 36 100.0 30 .................................... CCGGATTGCTGTTGCAATAAATAATTGTCC 108387 36 100.0 30 .................................... GGCAAATTATGGCGTTAGTCAACCTGGCGT 108321 36 100.0 30 .................................... TTTCCTTTACCTTACAAGACTTATTATATA 108255 36 100.0 30 .................................... CCTTTCCTTATCTTATGAGCCTAGTATATA 108189 36 100.0 30 .................................... CACTTTGCGTGTCGTAATCGTAAAAGTCCT 108123 36 100.0 30 .................................... CGGTTATATTCGGCCAAGAATTGAGCGTAC 108057 36 100.0 30 .................................... TCAATAAGCGATTAGTAGCTGTTGATTTTT 107991 36 100.0 30 .................................... AGAATATCATGGCTATCAACGACTGTTTCC 107925 36 100.0 30 .................................... AGGCACCCTTCGAAAAATCGTCGGCGACCT 107859 35 80.6 0 .............C..........C-....GT..AA | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.4 30 GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Left flank : GCACTGACTTAAATAAATTGTTTCTGCCACAATTGTACAAGCAAATTAAATTAAATTTAACTGCTGAACAAAATCGAATTATTACGGATCAAAGCCGTACGCTAAAAAATGTAGTACTTGAAGCGACTTACTCGCTGGATCTACCGCTAAATATCGGCGACCAAATTGCAACTGAAAAAGTTTTAAAATTTTGCGATCTACACTTTGATACTTCTTTATCAACTAACTGTTATGGTATAATAGAGACAATTCTAAAAACAGCTAAAGAATTAAATGAACAGCGTATTTTAGGTTTTATGAACATTTCTGATTATCTTACATTACAAGAGTTACAAGATTTATTTGAGTTGATCAGAACATTGGATTTAACCGTTCTTATTATTAAATTCTCAGAAAATCAGAGGTCTGTAGAATTTAATAATTGCCGGTACTACTATATTGATCAGGATTACGTCGATTGGCGTTATGAGTGATTCTGAGAAGATAATGTGGAAATAACG # Right flank : TAGCGCCTAATTGATGGCGCTATTTTTTACAATCAAATTTAGTGCATTTCCGCGCAACATCACCGATAATACAGGTAAATCTGCGGACAAGGTGGTGGCGTCATGACACCGGTGCAGGAAGCACAACTTAATGACATTTACAATTTGATCCTCAACCCAGCAACTCGTGACTGGGAGCGAGCGCAACTAGTTAAGCTGAAAAAAGCCGTTGCTGCAGGTGCTACTTTTAATACGGAGTTGGCACGGTTGGAAGCTAGCTTACGACCTTTGGCGGTACGCGATAATCTGACTCCCGATATGACTGATTTTTATCACAAAATTACCGGTGAGCCTGAATTGGCCGCCAAATTTGATCTTTCCCGCCACTATGCGGCCGACCAGCCGTATGAAGCGCGGGCAATTTTCGCCGGTGGTTGTTTTTGGTGTATGGTTGAGCCGTTTGATGCGCGACCAGGGATCATCGCGGTGATTTCGGGCTATACTGGCGGTCACACCGAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //