Array 1 23078-22261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCVZ010000046.1 Escherichia coli strain 2835-57 2835-57_S9_L001_NODE_46_32161_cov_15.864675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23077 29 100.0 32 ............................. GTTAACTCCAGGTGGCGCGGCAGTGTTCAGAA 23016 29 100.0 27 ............................. ACATATGCCACAACCAGGCGAAGAAAA 22960 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 22899 29 100.0 32 ............................. GTCGCTGGGTTATTTTGTGTTGTGGGGCGATC 22838 29 100.0 32 ............................. AATATTTGCGAATATTCGGCAGAAAGCGGAAA 22777 29 100.0 32 ............................. GCGGTTGATAGTGGCGGTGAGGACGGAGTCAC 22716 29 100.0 32 ............................. ATTTATCGAATACCACCACGGCACCGGCAAAA 22655 29 100.0 32 ............................. AAATGATAATGCTGGCGTGTGGGCGTGCCGGG 22594 29 100.0 32 ............................. AATAACACTAATTTTTTACACGGTATTCGCAC 22533 29 100.0 32 ............................. CTCTGCTCGGAGATTGCCAGTGAGTGAAAACG 22472 29 100.0 32 ............................. GAATTGAACGTCACCGGCACGGTGCCTTTTCG 22411 29 96.6 32 ............................T GCGTATATCTGTTGATGCGCACGGCGTGGCGG 22350 29 100.0 32 ............................. AATGATTTAATACCAGACGCAGAGTGCCACAC 22289 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGTGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAACGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1293-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCVZ010000021.1 Escherichia coli strain 2835-57 2835-57_S9_L001_NODE_21_90825_cov_16.191415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1292 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTGACAACTAA 1231 29 100.0 32 ............................. TAATGAGTCAGGGGAATACCGAATATTTTATA 1170 29 100.0 32 ............................. AAATTTATCGAGATCGGCAGGGGTTACTGACA 1109 29 100.0 31 ............................. CCGTTAATCCGGACTGCCAGCGAATAACGCT 1048 29 100.0 32 ............................. CAACATATTTAAACGATTTAAGCCAGGCATAT 987 29 100.0 32 ............................. GGATTCATCACGCGGTTATCCGGGGGCCGTTA 926 29 100.0 32 ............................. TTTAGCGATCTGATAACCGCAGGCGAATGCAG 865 29 100.0 32 ............................. GTGGTTGCGGGGTTATCGGTGGTAGTCACAAT 804 29 100.0 32 ............................. TTTGTTGTGATGCCAATTACAATACGTGATGC 743 29 100.0 32 ............................. CTCCAGCTCGATATCACACGACGCTATATCAG 682 29 100.0 32 ............................. GAAACAGCGCCCGCCGGTGCTGCGTTACCGTG 621 29 100.0 32 ............................. CCAACAAACTCATTTGCACTGGATTCGTGGAT 560 29 100.0 31 ............................. CCGGCGCAATTGTTTTTCAGCAGCACCCGGC 499 29 100.0 32 ............................. TATTTTCTTTGTTGCGGTAGGCAATATCGCCA 438 29 100.0 32 ............................. GTATTTTGTCACGACCAGCACGAGGCCGAATA 377 29 96.6 32 .............C............... CCCCAACTCATGCCCACATGAAAAACGTTGAC 316 29 96.6 32 .............C............... CCGCAAAAGGTATTATTTTTATCCGTCAGTAC 255 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.2 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //